remove old packaging related scripts and configs

master
davidovitch 9 years ago
parent a08247d95d
commit 7b77a84ff5

@ -1,8 +0,0 @@
'''
Runs epydoc to document pywafo
'''
import os
print('Generating html documentation for wafo in folder html.')
os.system('epydoc.py --html -o html --name wafo --graph all src/wafo')

@ -1,22 +0,0 @@
setup.py
src\wafo\__init__.py
src\wafo\dctpack.py
src\wafo\definitions.py
src\wafo\demo_sg.py
src\wafo\info.py
src\wafo\interpolate.py
src\wafo\kdetools.py
src\wafo\misc.py
src\wafo\namedtuple.py
src\wafo\objects.py
src\wafo\plotbackend.py
src\wafo\polynomial.py
src\wafo\polynomial_old.py
src\wafo\sg_filter.py
src\wafo\data\__init__.py
src\wafo\data\info.py
src\wafo\spectrum\__init__.py
src\wafo\spectrum\dispersion_relation.py
src\wafo\spectrum\models.py
src\wafo\transform\__init__.py
src\wafo\transform\models.py

@ -1,7 +0,0 @@
import subprocess as sub
print('Please wait, this may take a while')
#sub.check_call('nosetests --with-coverage --cover-package=wafo', stderr=sub.STDOUT)
sub.check_call('nosetests', stderr=sub.STDOUT)
print('Finished')

@ -1,212 +0,0 @@
"""
Install wafo
Usage:
python setup.py develop
python setup.py install [, --prefix=$PREFIX]
python setup.py bdist_wininst
PyPi upload:
python setup.py sdist bdist_wininst upload --show-response
"""
#!/usr/bin/env python
import os
import shutil
import sys
import subprocess
import re
import warnings
from Cython.Build import cythonize
MAJOR = 0
MINOR = 1
MICRO = 2
ISRELEASED = False
VERSION = '%d.%d.%d' % (MAJOR, MINOR, MICRO)
# sys.argv.append("build_src")
# sys.argv.append("build_ext")
# sys.argv.append("--inplace")
# sys.argv.append("develop")
# sys.argv.append("install")
DISTUTILS_DEBUG = True
PKG_NAME = 'wafo'
ROOT_DIR = os.path.join('src',PKG_NAME)
# make sure we import from this package, not an installed one:
sys.path.insert(0, ROOT_DIR)
import info
from setuptools import find_packages # setup, Extension
from numpy.distutils.core import setup, Extension # as FExtension
def svn_version():
'''Return the svn version as a string, raise a ValueError otherwise'''
from numpy.compat import asstr
env = os.environ.copy()
env['LC_ALL'] = 'C'
try:
out = subprocess.Popen(['svn', 'info'], stdout=subprocess.PIPE,
env=env).communicate()[0]
except OSError:
warnings.warn(" --- Could not run svn info --- ")
return ""
r = re.compile('Revision: ([0-9]+)')
svnver = None
for line in asstr(out).split('\n'):
m = r.match(line)
if m:
svnver = m.group(1)
if not svnver:
raise ValueError("Error while parsing svn version ?")
return svnver
FULLVERSION = VERSION
if not ISRELEASED:
FULLVERSION += '.dev'
# If in git or something, bypass the svn rev
if os.path.exists('.svn'):
FULLVERSION += svn_version()
def write_version_py(filename='version.py'):
cnt = """\
# THIS FILE IS GENERATED FROM SETUP.PY
short_version='%(version)s'
version='%(version)s'
release=%(isrelease)s
"""
fid = open(os.path.join(ROOT_DIR,filename), 'w')
try:
fid.write(cnt % {'version': VERSION, 'isrelease': str(ISRELEASED)})
finally:
fid.close()
def get_library_extension():
'''Return extension of an executable library'''
if os.name == 'posix': # executable library on Linux has extension .so
lib_ext = '.so'
elif os.name == 'nt': # extension on Windows is .pyd
lib_ext = '.pyd'
else:
raise UserWarning('Platform not supported:', os.name)
return lib_ext
def compile_all():
wd = os.getcwd()
root_dir = os.path.join(wd,'src',PKG_NAME)
root_src = os.path.join(root_dir, 'source')
buildscript = 'build_all.py'
lib_ext = get_library_extension()
if os.name == 'nt': # On Windows
build_call = 'python.exe %s' % buildscript
else:
build_call = 'python %s' % buildscript
for root, dirs, files in os.walk(root_src):
dir1 = [dir for dir in dirs
if not os.path.exists(os.path.join(root, dir, buildscript))]
for dir in dir1:
dirs.remove(dir) # don't visit directories without buildscript
if buildscript in files:
print('Building: ', root)
os.chdir(root)
t = os.system(build_call)
print(t)
for file in os.listdir('.'):
if file.endswith(lib_ext):
dest_file = os.path.join(root_dir, file)
if os.path.exists(dest_file):
os.remove(dest_file)
shutil.copy(os.path.join(root, file), root_dir)
os.chdir(wd)
def setup_package():
write_version_py()
join = os.path.join
packages = find_packages('src')
for p in packages:
print(p)
def convert_package2path(p):
return p.replace(PKG_NAME + '.',
'').replace(PKG_NAME, '').replace('.', os.path.sep)
package_paths = [convert_package2path(p) for p in packages]
test_paths = [join(pkg_path, 'test') for pkg_path in package_paths
if os.path.exists(join(ROOT_DIR, pkg_path, 'test'))]
testscripts = [join(subtst, f) for subtst in test_paths
for f in os.listdir(join(ROOT_DIR, subtst))
if not (f.startswith('.') or f.endswith('~') or
f.endswith('.old') or f.endswith('.bak'))]
datadir = 'data'
datafiles = [join(datadir, f) for f in os.listdir(join(ROOT_DIR, datadir))
if not (f.startswith('.') or f.endswith('~') or
f.endswith('.old') or f.endswith('.bak') or
f.endswith('.py') or f.endswith('test') )]
if 'build_ext' in sys.argv:
compile_all()
lib_ext = get_library_extension()
libs = [f for f in os.listdir(join(ROOT_DIR)) if f.endswith(lib_ext)]
packagedata = testscripts + datafiles + libs
# ext_module_list = cythonize(join(ROOT_DIR, "primes.pyx"))
#
# for ext_module in ext_module_list:
# if not isinstance(ext_module, Extension):
# ext_module.__class__ = Extension
# for name, src_files in [('mvn',('mvn.pyf', 'mvndst.f')),
# ('c_library',('c_library.pyf', 'c_functions.c'))]:
# sources = [join(ROOT_DIR, 'source', name, f) for f in src_files]
# ext_module_list.append(Extension(name='%s.%s' % (PKG_NAME, name),
# sources=sources))
# sources = [join(ROOT_DIR, 'source', 'mreg', 'cov2mmpdfreg_intfc.f'), ]
# libs = [join(ROOT_DIR, 'source', 'mreg', f)
# for f in ['dsvdc', 'mregmodule', 'intfcmod'] ]
# ext_module_list.append(Extension(name='wafo.covmod', sources=sources,
# libraries=libs))
# mvn_sources = [join(root_mvn, 'source', 'mvn', 'mvn.pyf'),
# join(root_mvn, 'source', 'mvn','mvndst.f')]
# ext_module_list.append(Extension(name='wafo.mvn', sources=mvn_sources))
setup(
version = VERSION,
author='WAFO-group',
author_email='wafo@maths.lth.se',
description = 'Statistical analysis and simulation of random waves and random loads',
long_description = info.__doc__,
install_requires = ['numpy>=1.4','numdifftools>=0.2'],
license = "GPL",
url='http://code.google.com/p/pywafo/',
name = PKG_NAME,
package_dir = {'': 'src'},
packages = packages,
package_data = {'': packagedata},
# ext_modules = ext_module_list,
classifiers=[
'Development Status :: 4 - Beta',
'Intended Audience :: Education',
'Intended Audience :: Science/Research',
'License :: OSI Approved :: GNU General Public License (GPL)',
'Operating System :: Microsoft :: Windows',
'Programming Language :: Python :: 2.6',
'Topic :: Scientific/Engineering :: Mathematics',
],
)
if __name__=='__main__':
setup_package()

@ -1,60 +0,0 @@
"""
Install wafo
Usage:
python setup.py install [, --prefix=$PREFIX]
python setup.py bdist_wininst
"""
#!/usr/bin/env python
import os, sys
#sys.argv.append("develop")
sys.argv.append("install")
# make sure we import from WAFO in this package, not an installed one:
sys.path.insert(0, os.path.join('src','wafo'))
import info
#import wafo
if True :#__file__ == 'setupegg.py':
# http://peak.telecommunity.com/DevCenter/setuptools
from setuptools import setup, Extension
else:
from distutils.core import setup
package_name = "wafo"
subpackages = ('spectrum','data','transform','covariance')
subpackagesfull = [os.path.join(package_name,f) for f in subpackages]
subtests = [os.path.join(subpkg,'test') for subpkg in subpackages]
testscripts = [os.path.join(subtst, f) for subtst in subtests
for f in os.listdir(os.path.join('src',package_name,subtst))
if not (f.startswith('.') or f.endswith('~') or
f.endswith('.old') or f.endswith('.bak'))]
datadir = 'data'
datafiles = [os.path.join(datadir, f) for f in os.listdir(os.path.join('src',package_name,datadir))
if not (f.endswith('.py') or f.endswith('test') )]
#docs = [os.path.join('doc', f) for f in os.listdir('doc')]
libs = [f for f in os.listdir(os.path.join('src',package_name)) if f.endswith('.pyd') ]
packagedata = testscripts + datafiles + libs #['c_library.pyd'] #,'disufq1.c','diffsumfunq.pyd','diffsumfunq.pyf','findrfc.c','rfc.pyd','rfc.pyf']
setup(
version = '0.11',
author='WAFO-group',
author_email='wafo@maths.lth.se',
description = info.__doc__,
license = "GPL",
url='http://www.maths.lth.se/matstat/wafo/',
name = package_name.upper(),
package_dir = {'': 'src'},
packages = [package_name,] + list(subpackagesfull),
package_data = {package_name: packagedata},
#package_data = {'': ['wafo.cfg']},
#scripts = [os.path.join('bin', f)
# for f in os.listdir('bin')
# if not (f.startswith('.') or f.endswith('~') or
# f.endswith('.old') or f.endswith('.bak'))],
)

@ -1,79 +0,0 @@
Metadata-Version: 1.1
Name: wafo
Version: 0.1.2
Summary: Statistical analysis and simulation of random waves and random loads
Home-page: http://code.google.com/p/pywafo/
Author: WAFO-group
Author-email: wafo@maths.lth.se
License: GPL
Description:
WAFO
====
WAFO is a toolbox Python routines for statistical analysis and simulation of random waves and random loads.
WAFO is freely redistributable software, see WAFO licence, cf. the GNU General Public License (GPL) and
contain tools for:
Fatigue Analysis
----------------
-Fatigue life prediction for random loads
-Theoretical density of rainflow cycles
Sea modelling
-------------
-Simulation of linear and non-linear Gaussian waves
-Estimation of seamodels (spectrums)
-Joint wave height, wave steepness, wave period distributions
Statistics
------------
-Extreme value analysis
-Kernel density estimation
-Hidden markov models
WAFO consists of several subpackages and classes with short descriptions below.
Classes:
TimeSeries - Data analysis of time series. Example: extraction of
turning points, estimation of spectrum and covariance function.
Estimation transformation used in transformed Gaussian model.
CovData - Computation of spectral functions, linear
and non-linear time series simulation.
SpecData - Computation of spectral moments and covariance functions, linear
and non-linear time series simulation.
Ex: common spectra implemented, directional spectra,
bandwidth measures, exact distributions for wave characteristics.
CyclePairs - Cycle counting, discretization, and crossings, calculation of
damage. Simulation of discrete Markov chains, switching Markov
chains, harmonic oscillator. Ex: Rainflow cycles and matrix,
discretization of loads. Damage of a rainflow count or
matrix, damage matrix, S-N plot.
Subpackages:
TRANSFORM - Modelling with linear or transformed Gaussian waves. Ex:
STATS - Statistical tools and extreme-value distributions.
Ex: generation of random numbers, estimation of parameters,
evaluation of pdf and cdf
KDETOOLS - Kernel-density estimation.
MISC - Miscellaneous routines.
DOCS - Documentation of toolbox, definitions. An overview is given
in the routine wafomenu.
DATA - Measurements from marine applications.
WAFO homepage: <http://www.maths.lth.se/matstat/wafo/>
On the WAFO home page you will find:
- The WAFO Tutorial
- New versions of WAFO to download.
- Reported bugs.
- List of publications related to WAFO.
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Education
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: GNU General Public License (GPL)
Classifier: Operating System :: Microsoft :: Windows
Classifier: Programming Language :: Python :: 2.6
Classifier: Topic :: Scientific/Engineering :: Mathematics

@ -1,331 +0,0 @@
.project
.pydevproject
gendocwafo.py
manifest
setup.py
setup_old.py
src/epydoc_wafo.prj
src/Wafo.egg-info/PKG-INFO
src/Wafo.egg-info/SOURCES.txt
src/Wafo.egg-info/dependency_links.txt
src/Wafo.egg-info/top_level.txt
src/wafo/MSO.py
src/wafo/MSPPT.py
src/wafo/SpecData1D.mm
src/wafo/__init__.py
src/wafo/bitwise.py
src/wafo/c_library.pyd
src/wafo/c_library.so
src/wafo/containers.py
src/wafo/cov2mod.pyd
src/wafo/dctpack.py
src/wafo/definitions.py
src/wafo/definitions.~py
src/wafo/demo_sg.py
src/wafo/demos.py
src/wafo/fig.py
src/wafo/gaussian.py
src/wafo/graphutil.py
src/wafo/info.py
src/wafo/integrate.py
src/wafo/interpolate.py
src/wafo/kdetools.py
src/wafo/magic.py
src/wafo/meshgrid.py
src/wafo/misc.py
src/wafo/mvn.pyd
src/wafo/mvn.so
src/wafo/mvnprdmod.pyd
src/wafo/mvnprdmod.so
src/wafo/namedtuple.py
src/wafo/objects.py
src/wafo/plotbackend.py
src/wafo/polynomial.py
src/wafo/polynomial_old.py
src/wafo/powerpoint.py
src/wafo/resize_problem.py
src/wafo/rindmod.pyd
src/wafo/rindmod.so
src/wafo/sg_filter.py
src/wafo/version.py
src/wafo/wafodata.py
src/wafo/wtraits.py
src/wafo/wtraits2.py
src/wafo/wtraits3.py
src/wafo.egg-info/SOURCES.txt
src/wafo/covariance/__init__.py
src/wafo/covariance/core.py
src/wafo/data/__init__.py
src/wafo/data/__init__.pyc
src/wafo/data/atlantic.dat
src/wafo/data/gfaks89.dat
src/wafo/data/gfaksr89.dat
src/wafo/data/info.py
src/wafo/data/info.pyc
src/wafo/data/info.~py
src/wafo/data/japansea.dat
src/wafo/data/northsea.dat
src/wafo/data/sea.dat
src/wafo/data/sea.m
src/wafo/data/sfa89.dat
src/wafo/data/sn.dat
src/wafo/data/wafoLogoNewWithBorder.png
src/wafo/data/wafoLogoNewWithBorder.svg
src/wafo/data/wafoLogoNewWithoutBorder.png
src/wafo/data/wafoLogoNewWithoutBorder.svg
src/wafo/data/wafologoWithBorder.png
src/wafo/data/yura87.dat
src/wafo/doc/__init__.py
src/wafo/doc/tutorial_scripts/chapter1.py
src/wafo/doc/tutorial_scripts/chapter2.py
src/wafo/doc/tutorial_scripts/chapter3.py
src/wafo/doc/tutorial_scripts/chapter4.py
src/wafo/doc/tutorial_scripts/chapter5.py
src/wafo/source/c_codes/build_all.py
src/wafo/source/c_codes/c_functions.c
src/wafo/source/c_codes/c_library rf3 rf5 license.txt
src/wafo/source/c_codes/c_library.pyd
src/wafo/source/c_codes/c_library.pyf
src/wafo/source/c_codes/setup.py
src/wafo/source/c_codes/old/build_all_.py
src/wafo/source/c_codes/old/diffsumfunq.pyd
src/wafo/source/c_codes/old/diffsumfunq.pyf
src/wafo/source/c_codes/old/disufq.pyf
src/wafo/source/c_codes/old/disufq1.c
src/wafo/source/c_codes/old/findcross.c
src/wafo/source/c_codes/old/findrfc.c
src/wafo/source/c_codes/old/rfc.pyd
src/wafo/source/c_codes/old/rfc.pyf
src/wafo/source/cov2XXXpdf/cov2acdf.f
src/wafo/source/cov2XXXpdf/cov2mmpdf.f
src/wafo/source/cov2XXXpdf/cov2mmtpdf.f
src/wafo/source/cov2XXXpdf/cov2tccpdf.f
src/wafo/source/cov2XXXpdf/cov2tcpdf.f
src/wafo/source/cov2XXXpdf/cov2thpdf.f
src/wafo/source/cov2XXXpdf/cov2thpdfalan.f
src/wafo/source/cov2XXXpdf/cov2tthpdf.f
src/wafo/source/cov2XXXpdf/bounds/cov2acdfb.f
src/wafo/source/cov2XXXpdf/bounds/cov2mmpdfb.f
src/wafo/source/cov2XXXpdf/bounds/cov2tccpdfb.f
src/wafo/source/cov2XXXpdf/bounds/cov2tthpdfb.f
src/wafo/source/mreg/checkmod.mod
src/wafo/source/mreg/cov2mmpdfmod.mod
src/wafo/source/mreg/cov2mmpdfreg.f
src/wafo/source/mreg/cov2mmpdfreg_intfc.f
src/wafo/source/mreg/dsvdc.f
src/wafo/source/mreg/epsmod.mod
src/wafo/source/mreg/expaccmod.mod
src/wafo/source/mreg/infcmod.mod
src/wafo/source/mreg/intfcmod.f
src/wafo/source/mreg/mregmod.mod
src/wafo/source/mreg/mregmodule.f
src/wafo/source/mreg/quadrmod.mod
src/wafo/source/mreg/rintmod.mod
src/wafo/source/mreg/sizemod.mod
src/wafo/source/mreg/svd.mod
src/wafo/source/mreg/tbrmod.mod
src/wafo/source/mvn/build_all.py
src/wafo/source/mvn/mvn.pyd
src/wafo/source/mvn/mvn.pyf
src/wafo/source/mvn/mvndst.f
src/wafo/source/mvnprd/adaptivegausskronrod.mod
src/wafo/source/mvnprd/build_all.py
src/wafo/source/mvnprd/erfcoremod.mod
src/wafo/source/mvnprd/functioninterface.mod
src/wafo/source/mvnprd/integration1dmodule.mod
src/wafo/source/mvnprd/mvnprd.dsp
src/wafo/source/mvnprd/mvnprd.dsw
src/wafo/source/mvnprd/mvnprd.f
src/wafo/source/mvnprd/mvnprd.pyf
src/wafo/source/mvnprd/mvnprd_interface.f
src/wafo/source/mvnprd/mvnprdmod.pyd
src/wafo/source/mvnprd/mvnprodcorrprb.f
src/wafo/source/mvnprd/mvnprodcorrprb_interface.f
src/wafo/source/mvnprd/mvnprodcorrprbmod.mod
src/wafo/source/mvnprd/setup.py
src/wafo/source/mvnprd/old/mvnprodcorrprb/adaptivegausskronrod.mod
src/wafo/source/mvnprd/old/mvnprodcorrprb/build_all.py
src/wafo/source/mvnprd/old/mvnprodcorrprb/erfcoremod.mod
src/wafo/source/mvnprd/old/mvnprodcorrprb/functioninterface.mod
src/wafo/source/mvnprd/old/mvnprodcorrprb/integration1dmodule.mod
src/wafo/source/mvnprd/old/mvnprodcorrprb/mvnprdmod.pyd
src/wafo/source/mvnprd/old/mvnprodcorrprb/mvnprodcorrprb.f
src/wafo/source/mvnprd/old/mvnprodcorrprb/mvnprodcorrprb_interface.f
src/wafo/source/mvnprd/old/mvnprodcorrprb/mvnprodcorrprbmod.mod
src/wafo/source/mvnprd/old/mvnprodcorrprb/Debug/DF60.PDB
src/wafo/source/mvnprd/old/mvnprodcorrprb/Debug/adaptivegausskronrod.mod
src/wafo/source/mvnprd/old/mvnprodcorrprb/Debug/erfcoremod.mod
src/wafo/source/mvnprd/old/mvnprodcorrprb/Debug/functioninterface.mod
src/wafo/source/mvnprd/old/mvnprodcorrprb/Debug/integration1dmodule.mod
src/wafo/source/mvnprd/old/mvnprodcorrprb/Debug/mvnprodcorrprb.obj
src/wafo/source/mvnprd/old/mvnprodcorrprb/Debug/mvnprodcorrprbmod.mod
src/wafo/source/mvnprd/old/mvnprodcorrprb/Debug/test_mvnprodcorrprb.exe
src/wafo/source/mvnprd/old/mvnprodcorrprb/Debug/test_mvnprodcorrprb.ilk
src/wafo/source/mvnprd/old/mvnprodcorrprb/Debug/test_mvnprodcorrprb.obj
src/wafo/source/mvnprd/old/mvnprodcorrprb/Debug/test_mvnprodcorrprb.pdb
src/wafo/source/mvnprd/old/mvnprodcorrprb/old/AdaptiveGaussKronrod.f90
src/wafo/source/mvnprd/old/mvnprodcorrprb/old/adaptivegausskronrod.mod
src/wafo/source/mvnprd/old/mvnprodcorrprb/old/adaptivegausskronrod.pyf
src/wafo/source/mvnprd/old/mvnprodcorrprb/old/adaptivegausskronrod.pyfo
src/wafo/source/mvnprd/old/mvnprodcorrprb/old/dea.f
src/wafo/source/mvnprd/old/mvnprodcorrprb/old/deamod.pyf
src/wafo/source/mvnprd/old/mvnprodcorrprb/old/erfcore.f90
src/wafo/source/mvnprd/old/mvnprodcorrprb/old/erfcore.pyd
src/wafo/source/mvnprd/old/mvnprodcorrprb/old/erfcoremod.mod
src/wafo/source/mvnprd/old/mvnprodcorrprb/old/functioninterface.mod
src/wafo/source/mvnprd/old/mvnprodcorrprb/old/integration1Dmodule.f
src/wafo/source/mvnprd/old/mvnprodcorrprb/old/integration1Dmodule.f90
src/wafo/source/mvnprd/old/mvnprodcorrprb/old/integration1dmodule.mod
src/wafo/source/mvnprd/old/mvnprodcorrprb/old/mvn.exe
src/wafo/source/mvnprd/old/mvnprodcorrprb/old/mvnprodcorrprb.f90
src/wafo/source/mvnprd/old/mvnprodcorrprb/old/mvnprodcorrprb.pyf
src/wafo/source/mvnprd/old/mvnprodcorrprb/old/mvnprodcorrprbmod.f90
src/wafo/source/mvnprd/old/mvnprodcorrprb/old/test_mvnprodcorrprb.dsp
src/wafo/source/mvnprd/old/mvnprodcorrprb/old/test_mvnprodcorrprb.dsw
src/wafo/source/mvnprd/old/mvnprodcorrprb/old/test_mvnprodcorrprb.f
src/wafo/source/mvnprd/old/mvnprodcorrprb/old/test_mvnprodcorrprb.opt
src/wafo/source/mvnprd/old/mvnprodcorrprb/old/test_mvnprodcorrprb.plg
src/wafo/source/old/adaptivegausskronrod.mod
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src/wafo/wave_theory/test/test_dispersion_relation.py
src/wafo/wave_theory/test/test_dispersion_relation.pyc
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