diff --git a/pywafo/gendocwafo.py b/pywafo/gendocwafo.py deleted file mode 100644 index 858969f..0000000 --- a/pywafo/gendocwafo.py +++ /dev/null @@ -1,8 +0,0 @@ -''' -Runs epydoc to document pywafo -''' -import os - -print('Generating html documentation for wafo in folder html.') - -os.system('epydoc.py --html -o html --name wafo --graph all src/wafo') \ No newline at end of file diff --git a/pywafo/manifest b/pywafo/manifest deleted file mode 100644 index c64f3a8..0000000 --- a/pywafo/manifest +++ /dev/null @@ -1,22 +0,0 @@ -setup.py -src\wafo\__init__.py -src\wafo\dctpack.py -src\wafo\definitions.py -src\wafo\demo_sg.py -src\wafo\info.py -src\wafo\interpolate.py -src\wafo\kdetools.py -src\wafo\misc.py -src\wafo\namedtuple.py -src\wafo\objects.py -src\wafo\plotbackend.py -src\wafo\polynomial.py -src\wafo\polynomial_old.py -src\wafo\sg_filter.py -src\wafo\data\__init__.py -src\wafo\data\info.py -src\wafo\spectrum\__init__.py -src\wafo\spectrum\dispersion_relation.py -src\wafo\spectrum\models.py -src\wafo\transform\__init__.py -src\wafo\transform\models.py diff --git a/pywafo/nose_all.py b/pywafo/nose_all.py deleted file mode 100644 index 7cbeb02..0000000 --- a/pywafo/nose_all.py +++ /dev/null @@ -1,7 +0,0 @@ -import subprocess as sub - -print('Please wait, this may take a while') - -#sub.check_call('nosetests --with-coverage --cover-package=wafo', stderr=sub.STDOUT) -sub.check_call('nosetests', stderr=sub.STDOUT) -print('Finished') \ No newline at end of file diff --git a/pywafo/setup.py b/pywafo/setup.py deleted file mode 100644 index f94bb86..0000000 --- a/pywafo/setup.py +++ /dev/null @@ -1,212 +0,0 @@ -""" -Install wafo - -Usage: - -python setup.py develop -python setup.py install [, --prefix=$PREFIX] - -python setup.py bdist_wininst - -PyPi upload: - -python setup.py sdist bdist_wininst upload --show-response - -""" -#!/usr/bin/env python - -import os -import shutil -import sys -import subprocess -import re -import warnings -from Cython.Build import cythonize -MAJOR = 0 -MINOR = 1 -MICRO = 2 -ISRELEASED = False -VERSION = '%d.%d.%d' % (MAJOR, MINOR, MICRO) -# sys.argv.append("build_src") -# sys.argv.append("build_ext") -# sys.argv.append("--inplace") -# sys.argv.append("develop") -# sys.argv.append("install") -DISTUTILS_DEBUG = True -PKG_NAME = 'wafo' -ROOT_DIR = os.path.join('src',PKG_NAME) - -# make sure we import from this package, not an installed one: -sys.path.insert(0, ROOT_DIR) -import info - -from setuptools import find_packages # setup, Extension -from numpy.distutils.core import setup, Extension # as FExtension - -def svn_version(): - '''Return the svn version as a string, raise a ValueError otherwise''' - from numpy.compat import asstr - - env = os.environ.copy() - env['LC_ALL'] = 'C' - try: - out = subprocess.Popen(['svn', 'info'], stdout=subprocess.PIPE, - env=env).communicate()[0] - except OSError: - warnings.warn(" --- Could not run svn info --- ") - return "" - - r = re.compile('Revision: ([0-9]+)') - svnver = None - for line in asstr(out).split('\n'): - m = r.match(line) - if m: - svnver = m.group(1) - - if not svnver: - raise ValueError("Error while parsing svn version ?") - return svnver - -FULLVERSION = VERSION -if not ISRELEASED: - FULLVERSION += '.dev' - # If in git or something, bypass the svn rev - if os.path.exists('.svn'): - FULLVERSION += svn_version() - -def write_version_py(filename='version.py'): - cnt = """\ -# THIS FILE IS GENERATED FROM SETUP.PY -short_version='%(version)s' -version='%(version)s' -release=%(isrelease)s -""" - fid = open(os.path.join(ROOT_DIR,filename), 'w') - try: - fid.write(cnt % {'version': VERSION, 'isrelease': str(ISRELEASED)}) - finally: - fid.close() - - -def get_library_extension(): - '''Return extension of an executable library''' - if os.name == 'posix': # executable library on Linux has extension .so - lib_ext = '.so' - elif os.name == 'nt': # extension on Windows is .pyd - lib_ext = '.pyd' - else: - raise UserWarning('Platform not supported:', os.name) - return lib_ext - - -def compile_all(): - wd = os.getcwd() - root_dir = os.path.join(wd,'src',PKG_NAME) - root_src = os.path.join(root_dir, 'source') - buildscript = 'build_all.py' - lib_ext = get_library_extension() - - if os.name == 'nt': # On Windows - build_call = 'python.exe %s' % buildscript - else: - build_call = 'python %s' % buildscript - - for root, dirs, files in os.walk(root_src): - dir1 = [dir for dir in dirs - if not os.path.exists(os.path.join(root, dir, buildscript))] - for dir in dir1: - dirs.remove(dir) # don't visit directories without buildscript - if buildscript in files: - print('Building: ', root) - os.chdir(root) - t = os.system(build_call) - print(t) - - for file in os.listdir('.'): - if file.endswith(lib_ext): - dest_file = os.path.join(root_dir, file) - if os.path.exists(dest_file): - os.remove(dest_file) - shutil.copy(os.path.join(root, file), root_dir) - os.chdir(wd) - - -def setup_package(): - write_version_py() - join = os.path.join - packages = find_packages('src') - for p in packages: - print(p) - def convert_package2path(p): - return p.replace(PKG_NAME + '.', - '').replace(PKG_NAME, '').replace('.', os.path.sep) - package_paths = [convert_package2path(p) for p in packages] - test_paths = [join(pkg_path, 'test') for pkg_path in package_paths - if os.path.exists(join(ROOT_DIR, pkg_path, 'test'))] - testscripts = [join(subtst, f) for subtst in test_paths - for f in os.listdir(join(ROOT_DIR, subtst)) - if not (f.startswith('.') or f.endswith('~') or - f.endswith('.old') or f.endswith('.bak'))] - - datadir = 'data' - datafiles = [join(datadir, f) for f in os.listdir(join(ROOT_DIR, datadir)) - if not (f.startswith('.') or f.endswith('~') or - f.endswith('.old') or f.endswith('.bak') or - f.endswith('.py') or f.endswith('test') )] - if 'build_ext' in sys.argv: - compile_all() - lib_ext = get_library_extension() - libs = [f for f in os.listdir(join(ROOT_DIR)) if f.endswith(lib_ext)] - - packagedata = testscripts + datafiles + libs - -# ext_module_list = cythonize(join(ROOT_DIR, "primes.pyx")) -# -# for ext_module in ext_module_list: -# if not isinstance(ext_module, Extension): -# ext_module.__class__ = Extension - -# for name, src_files in [('mvn',('mvn.pyf', 'mvndst.f')), -# ('c_library',('c_library.pyf', 'c_functions.c'))]: -# sources = [join(ROOT_DIR, 'source', name, f) for f in src_files] -# ext_module_list.append(Extension(name='%s.%s' % (PKG_NAME, name), -# sources=sources)) - -# sources = [join(ROOT_DIR, 'source', 'mreg', 'cov2mmpdfreg_intfc.f'), ] -# libs = [join(ROOT_DIR, 'source', 'mreg', f) -# for f in ['dsvdc', 'mregmodule', 'intfcmod'] ] -# ext_module_list.append(Extension(name='wafo.covmod', sources=sources, -# libraries=libs)) - -# mvn_sources = [join(root_mvn, 'source', 'mvn', 'mvn.pyf'), -# join(root_mvn, 'source', 'mvn','mvndst.f')] -# ext_module_list.append(Extension(name='wafo.mvn', sources=mvn_sources)) - - setup( - version = VERSION, - author='WAFO-group', - author_email='wafo@maths.lth.se', - description = 'Statistical analysis and simulation of random waves and random loads', - long_description = info.__doc__, - install_requires = ['numpy>=1.4','numdifftools>=0.2'], - license = "GPL", - url='http://code.google.com/p/pywafo/', - name = PKG_NAME, - package_dir = {'': 'src'}, - packages = packages, - package_data = {'': packagedata}, - # ext_modules = ext_module_list, - classifiers=[ - 'Development Status :: 4 - Beta', - 'Intended Audience :: Education', - 'Intended Audience :: Science/Research', - 'License :: OSI Approved :: GNU General Public License (GPL)', - 'Operating System :: Microsoft :: Windows', - 'Programming Language :: Python :: 2.6', - 'Topic :: Scientific/Engineering :: Mathematics', - ], - ) - - -if __name__=='__main__': - setup_package() \ No newline at end of file diff --git a/pywafo/setup_old.py b/pywafo/setup_old.py deleted file mode 100644 index 1dfd430..0000000 --- a/pywafo/setup_old.py +++ /dev/null @@ -1,60 +0,0 @@ -""" -Install wafo - -Usage: - -python setup.py install [, --prefix=$PREFIX] - - -python setup.py bdist_wininst -""" -#!/usr/bin/env python -import os, sys - -#sys.argv.append("develop") -sys.argv.append("install") -# make sure we import from WAFO in this package, not an installed one: -sys.path.insert(0, os.path.join('src','wafo')) -import info -#import wafo - -if True :#__file__ == 'setupegg.py': - # http://peak.telecommunity.com/DevCenter/setuptools - from setuptools import setup, Extension -else: - from distutils.core import setup - -package_name = "wafo" -subpackages = ('spectrum','data','transform','covariance') -subpackagesfull = [os.path.join(package_name,f) for f in subpackages] -subtests = [os.path.join(subpkg,'test') for subpkg in subpackages] - -testscripts = [os.path.join(subtst, f) for subtst in subtests - for f in os.listdir(os.path.join('src',package_name,subtst)) - if not (f.startswith('.') or f.endswith('~') or - f.endswith('.old') or f.endswith('.bak'))] -datadir = 'data' -datafiles = [os.path.join(datadir, f) for f in os.listdir(os.path.join('src',package_name,datadir)) - if not (f.endswith('.py') or f.endswith('test') )] -#docs = [os.path.join('doc', f) for f in os.listdir('doc')] -libs = [f for f in os.listdir(os.path.join('src',package_name)) if f.endswith('.pyd') ] -packagedata = testscripts + datafiles + libs #['c_library.pyd'] #,'disufq1.c','diffsumfunq.pyd','diffsumfunq.pyf','findrfc.c','rfc.pyd','rfc.pyf'] - - -setup( - version = '0.11', - author='WAFO-group', - author_email='wafo@maths.lth.se', - description = info.__doc__, - license = "GPL", - url='http://www.maths.lth.se/matstat/wafo/', - name = package_name.upper(), - package_dir = {'': 'src'}, - packages = [package_name,] + list(subpackagesfull), - package_data = {package_name: packagedata}, - #package_data = {'': ['wafo.cfg']}, - #scripts = [os.path.join('bin', f) - # for f in os.listdir('bin') - # if not (f.startswith('.') or f.endswith('~') or - # f.endswith('.old') or f.endswith('.bak'))], - ) diff --git a/pywafo/src/Wafo.egg-info/PKG-INFO b/pywafo/src/Wafo.egg-info/PKG-INFO deleted file mode 100644 index 4bf4485..0000000 --- a/pywafo/src/Wafo.egg-info/PKG-INFO +++ /dev/null @@ -1,79 +0,0 @@ -Metadata-Version: 1.1 -Name: wafo -Version: 0.1.2 -Summary: Statistical analysis and simulation of random waves and random loads -Home-page: http://code.google.com/p/pywafo/ -Author: WAFO-group -Author-email: wafo@maths.lth.se -License: GPL -Description: - WAFO - ==== - WAFO is a toolbox Python routines for statistical analysis and simulation of random waves and random loads. - WAFO is freely redistributable software, see WAFO licence, cf. the GNU General Public License (GPL) and - contain tools for: - - Fatigue Analysis - ---------------- - -Fatigue life prediction for random loads - -Theoretical density of rainflow cycles - - Sea modelling - ------------- - -Simulation of linear and non-linear Gaussian waves - -Estimation of seamodels (spectrums) - -Joint wave height, wave steepness, wave period distributions - - Statistics - ------------ - -Extreme value analysis - -Kernel density estimation - -Hidden markov models - - WAFO consists of several subpackages and classes with short descriptions below. - - Classes: - TimeSeries - Data analysis of time series. Example: extraction of - turning points, estimation of spectrum and covariance function. - Estimation transformation used in transformed Gaussian model. - CovData - Computation of spectral functions, linear - and non-linear time series simulation. - SpecData - Computation of spectral moments and covariance functions, linear - and non-linear time series simulation. - Ex: common spectra implemented, directional spectra, - bandwidth measures, exact distributions for wave characteristics. - - - CyclePairs - Cycle counting, discretization, and crossings, calculation of - damage. Simulation of discrete Markov chains, switching Markov - chains, harmonic oscillator. Ex: Rainflow cycles and matrix, - discretization of loads. Damage of a rainflow count or - matrix, damage matrix, S-N plot. - - - Subpackages: - TRANSFORM - Modelling with linear or transformed Gaussian waves. Ex: - STATS - Statistical tools and extreme-value distributions. - Ex: generation of random numbers, estimation of parameters, - evaluation of pdf and cdf - KDETOOLS - Kernel-density estimation. - MISC - Miscellaneous routines. - DOCS - Documentation of toolbox, definitions. An overview is given - in the routine wafomenu. - DATA - Measurements from marine applications. - - WAFO homepage: - On the WAFO home page you will find: - - The WAFO Tutorial - - New versions of WAFO to download. - - Reported bugs. - - List of publications related to WAFO. - -Platform: UNKNOWN -Classifier: Development Status :: 4 - Beta -Classifier: Intended Audience :: Education -Classifier: Intended Audience :: Science/Research -Classifier: License :: OSI Approved :: GNU General Public License (GPL) -Classifier: Operating System :: Microsoft :: Windows -Classifier: Programming Language :: Python :: 2.6 -Classifier: Topic :: Scientific/Engineering :: Mathematics diff --git a/pywafo/src/Wafo.egg-info/SOURCES.txt b/pywafo/src/Wafo.egg-info/SOURCES.txt deleted file mode 100644 index 3b3c382..0000000 --- a/pywafo/src/Wafo.egg-info/SOURCES.txt +++ /dev/null @@ -1,331 +0,0 @@ -.project -.pydevproject -gendocwafo.py -manifest -setup.py -setup_old.py -src/epydoc_wafo.prj -src/Wafo.egg-info/PKG-INFO -src/Wafo.egg-info/SOURCES.txt -src/Wafo.egg-info/dependency_links.txt -src/Wafo.egg-info/top_level.txt -src/wafo/MSO.py -src/wafo/MSPPT.py -src/wafo/SpecData1D.mm -src/wafo/__init__.py -src/wafo/bitwise.py -src/wafo/c_library.pyd -src/wafo/c_library.so -src/wafo/containers.py -src/wafo/cov2mod.pyd -src/wafo/dctpack.py -src/wafo/definitions.py -src/wafo/definitions.~py -src/wafo/demo_sg.py -src/wafo/demos.py -src/wafo/fig.py -src/wafo/gaussian.py -src/wafo/graphutil.py -src/wafo/info.py -src/wafo/integrate.py -src/wafo/interpolate.py -src/wafo/kdetools.py -src/wafo/magic.py -src/wafo/meshgrid.py -src/wafo/misc.py -src/wafo/mvn.pyd -src/wafo/mvn.so -src/wafo/mvnprdmod.pyd -src/wafo/mvnprdmod.so -src/wafo/namedtuple.py -src/wafo/objects.py -src/wafo/plotbackend.py -src/wafo/polynomial.py -src/wafo/polynomial_old.py -src/wafo/powerpoint.py -src/wafo/resize_problem.py -src/wafo/rindmod.pyd -src/wafo/rindmod.so -src/wafo/sg_filter.py -src/wafo/version.py -src/wafo/wafodata.py -src/wafo/wtraits.py -src/wafo/wtraits2.py -src/wafo/wtraits3.py -src/wafo.egg-info/SOURCES.txt -src/wafo/covariance/__init__.py -src/wafo/covariance/core.py -src/wafo/data/__init__.py -src/wafo/data/__init__.pyc -src/wafo/data/atlantic.dat -src/wafo/data/gfaks89.dat -src/wafo/data/gfaksr89.dat -src/wafo/data/info.py -src/wafo/data/info.pyc -src/wafo/data/info.~py -src/wafo/data/japansea.dat -src/wafo/data/northsea.dat -src/wafo/data/sea.dat -src/wafo/data/sea.m -src/wafo/data/sfa89.dat -src/wafo/data/sn.dat -src/wafo/data/wafoLogoNewWithBorder.png -src/wafo/data/wafoLogoNewWithBorder.svg -src/wafo/data/wafoLogoNewWithoutBorder.png -src/wafo/data/wafoLogoNewWithoutBorder.svg -src/wafo/data/wafologoWithBorder.png -src/wafo/data/yura87.dat -src/wafo/doc/__init__.py -src/wafo/doc/tutorial_scripts/chapter1.py -src/wafo/doc/tutorial_scripts/chapter2.py -src/wafo/doc/tutorial_scripts/chapter3.py -src/wafo/doc/tutorial_scripts/chapter4.py 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