557c15df1f
Enable observed impacts to be overwritten with NaN
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This is useful where we have a structure or rock wall and want to specify that we don't know what the observed storm regime is. In this case, we'll put a 'unknown' string in the ./data/raw/profile_features observed storm impact csv field and overwrite it with a NaN in our pandas dataframe.
6 years ago
e1dc57ead6
Fix formatting
6 years ago
1774c15e89
Fix finding z elevation of dune toe/crests
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If the x-coordinate specified for the toe/crest does not exist for the profile type, this fixes an issue where the z-elevation of the other profile type was not being correctly calculated. Also, some commented out code is removed.
6 years ago
16ca2aa482
Fix volume difference percent when difference equal to zero
6 years ago
cdca489e4a
Fix dune toe TWL exceedence hours
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Dune toe TWL exceedence hours were being left as zero if the profile didn't have a dune toe (technically correct). In these cases it's more useful to calculate the exceedence hours of the dune crest level.
6 years ago
1fca122276
Ensure float precision is limited when outputting csv
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Without this change, interim .csv files were being recorded with 9 decimal places, greatly increasing the file size. This keeps the number of decimals limited to a practical amount.
6 years ago
9e3716480a
Fix hard-coded file names in create_observed_impacts
6 years ago
bf61116efb
Remove R_low requirement when forecasting overwash
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Some runup parameterizations only give R_high, but not R_low. In these cases, let's just classify the profile as overwash if R_high > D_high.
6 years ago
bbe86b231a
Fix swash regime not detected if there is no dune toe
6 years ago
cbfd69c852
Fix typo in comment
6 years ago
1e45675611
Optimize calculation of profile volume difference
6 years ago
95f525ef00
Add better error detection when calculating slope from profile
6 years ago
48f2142708
Change default slope calculation to least squares
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Rather than end points
6 years ago
a9a5e02933
Improve performance of TWL forecasting function
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Use faster pandas indexing instead of .query function
6 years ago
25a26d9e46
Add intertidal slope option to TWL forecasts
6 years ago
6ffdd2611d
Allow crossing to return empty list if all values are masked
6 years ago
36256514b5
Allow crossing function to detect crossings at end points
6 years ago
6efae1c0da
Add Power et al. (2018) runup model
6 years ago
4ea435a814
Add grain size as required runup parameter
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Used by Power et al. (2018), but not required for other models
6 years ago
821e5c34cf
Include grain size inputs
6 years ago
6c13fc389c
Parse cumulative wave power and energy from mat file into .csv
6 years ago
d8353bd635
Add Nielsen & Hanslow 1991 runup parameterization
6 years ago
4e5b0ce81c
Fix formatting
6 years ago
0adbf68635
Add Holman 1986 to list of runup functions
6 years ago
d00a9d8c21
Add TODOs for getting observed storm impacts
6 years ago
e6bb50c00e
Fix bug when calculating R_high lat/lon geojson
6 years ago
faa843ce21
Fix formatting
6 years ago
2d22734bfa
Fix position of R_high in geojson to be closest to dune face
6 years ago
3af90601ef
Refactor overwriting dune crest/toes and impacts
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Uses one, central .csv file contained in ./data/raw/profile_features_chris_leaman
6 years ago
e1d95a1752
Improve performance by replacing .query with .loc
6 years ago
6912c50a49
Use dune crest for mean slope calculation if no dune toe
6 years ago
c7090a43b9
Change log level to info
6 years ago
a6ab8b8354
Clean up cli
6 years ago
79d46c0433
Refactor crossings and lat/lon conversion functions
6 years ago
6f215da826
Refactor crossings and lat/lon conversion functions
6 years ago
a94fdd2dfb
Refactor logging configuration
6 years ago
e50fadb35c
Rename csv_to_shp to csv_to_geojson
6 years ago
3f2cfa50aa
Update functions to output geojson for QGIS
6 years ago
daad9c5b82
Remove other packages from logging
6 years ago
4b9e69f2f0
Add override of profile features
6 years ago
12070a1acf
Plot site .shp as line instead of points
6 years ago
91a0d8327e
Rename data shape function
6 years ago
b7704c2d35
Fix formatting
6 years ago
947d2093bd
Take post-storm profile based on isgood parameter in .mat file
6 years ago
3a1a3dddf1
Update Stockdon 2006 runup function to accept either a list or a float
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This is an improvement over having two separate functions, depending on the parameter type. Other runup functions should be written in a similar style.
6 years ago
836873b3f3
Fix formatting
6 years ago
4592cb858e
Remove profile_type from impacts.csv
6 years ago
9f1b801687
Add function for estimating twl exceedence time
6 years ago
5f59c8f8ee
Update slope function to accept top x coordinate
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Needed to ensure correctly mean slope is calculated. If only inputting dune toe z coordinates, sometimes the function can chose the wrong x coordinate if there are multiple crossings of the z coordinate.
6 years ago
b8ead25cd5
Disable numpy futurewarnings when running from CLI
6 years ago
Chris Leaman