#initial commit to setup the repo
tinoheimhuber
5 years ago
commit
66e671e4dc
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clear all
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close all
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t3sFilename = 'Daly_5m_Mesh.t3s';
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BathyIndex = 1;
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fid = fopen(t3sFilename,'r');
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tline = fgets(fid);
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while strcmp(tline(1:min(length(tline),10)),':EndHeader')== 0
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if strcmp(tline(1:min(length(tline),10)),':NodeCount')== 1
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nodeCount=str2num(tline(11:end));
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end
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if strcmp(tline(1:min(length(tline),13)),':ElementCount')== 1
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elementCount=str2num(tline(14:end));
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end
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tline = fgets(fid);
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end
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tline = fgets(fid);
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%%%%Read T3S File
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for i = 1 : nodeCount
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tempLine=strsplit(tline,' ');
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node(i).X = str2num(tempLine{1});
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node(i).Y = str2num(tempLine{2});
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node(i).Z = str2num(tempLine{2+BathyIndex});
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tline = fgets(fid);
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end
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for i = 1 : elementCount
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tempLine=strsplit(tline,' ');
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element(i).p1 = str2num(tempLine{1});
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element(i).p2 = str2num(tempLine{2});
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element(i).p3 = str2num(tempLine{3});
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tline = fgets(fid);
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end
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fclose(fid)
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rmaFilename = [t3sFilename(1:end-3) , 'rm1'];
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fid1 = fopen(rmaFilename,'w');
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fprintf(fid1,'\n');
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fprintf(fid1,' 0 1 1 1 1 1 0 0 0 0 1 0 0 1 0 0.0 0.0 2\n');
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fprintf(fid1,' 0. 0. 0.0000 0.0000 0.0000 0.0000 0. 0.\n');
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for i = 1 : elementCount
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fprintf(fid1,'%5.0f%5.0f 0%5.0f 0%5.0f 0 0 0 1 0.000%5.0f\n', ...
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i,element(i).p1,element(i).p2,element(i).p3,i);
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end
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fprintf(fid1,' 9999\n');
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for i = 1 : nodeCount
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fprintf(fid1,'%10.0f%16.7f%20.7f%14.4f%70.0f 0.0000\n', ...
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i,node(i).X,node(i).Y,node(i).Z,0);
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end
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fprintf(fid1,' 9999\n');
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fprintf(fid1,' 9999\n');
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fprintf(fid1,' 0 NENTRY\n');
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fprintf(fid1,' 0 NCLM\n');
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fprintf(fid1,'ENDDATA\n');
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@ -0,0 +1,159 @@
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# -*- coding: utf-8 -*-
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#==========================================================#
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#Last Updated - June 2018
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#@author: z5025317 Valentin Heimhuber
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#code for combining all extracted RMA2 and 11 results into a single data frame and save it to CSV
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#==========================================================#
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#Load packages
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#==========================================================#
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import numpy as np
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import os
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import pandas as pd
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import glob
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import matplotlib
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import matplotlib.pyplot as plt
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from datetime import datetime
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from datetime import timedelta
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#==========================================================#
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#==========================================================#
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#Input parameters and directories
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#==========================================================#
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# Set working direcotry (where postprocessed NARClIM data is located)
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#set beginning and end years and corresponding scenario code
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fs=['Hwq003', 'Hwq005']
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HDvariables = ['depth', 'elev','vel']
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WQvariables = ['sal']
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Subset_years = False
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startyear=1999 #years need to be adjusted based on the time period of the model runs
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endyear=2004
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#year=range(startyear, endyear+1)
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#set directory path for output files
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output_directory = 'H:/WRL_Projects/Hunter_CC_Modeling/Module_6/03_Results/Output/Postprocessed/Compound_data/'
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nodes_csv = 'H:/WRL_Projects/Hunter_CC_Modeling/Module_6/03_Results/Chainages/Hunter_nodes.csv'
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#read csv file with nodes and chainages to extract data from
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node = pd.read_csv(nodes_csv)['Hunter'].values
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chainages = pd.read_csv(nodes_csv)['x_km'].values
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#==========================================================#
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#==========================================================#
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#output_directory = 'J:/Project wrl2016032/NARCLIM_Raw_Data/Extracted'
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if not os.path.exists(output_directory):
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os.makedirs(output_directory)
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print('-------------------------------------------')
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print("output directory folder didn't exist and was generated")
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print('-------------------------------------------')
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#==========================================================#
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#==========================================================#
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#data extraction for RMA11 Variables
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#==========================================================#
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WQ_Summary_df = pd.DataFrame()
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for variable in WQvariables:
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for f in fs:
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f = 'Hwq003'
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input_directory = 'H:/WRL_Projects/Hunter_CC_Modeling/Module_6/03_Results/Output2/'+ f
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# Set working direcotry (where postprocessed NARClIM data is located)
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os.chdir(input_directory)
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Summary_df = pd.DataFrame()
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df = pd.DataFrame()
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for NODE in node:
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NODE = str(NODE)
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#set input and output directories
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#==========================================================#
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#Load data file
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Clim_Var_CSVs = glob.glob('*_'+ NODE + '_*WQ*')
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print Clim_Var_CSVs
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print NODE
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clim_var_csv_path = Clim_Var_CSVs[0]
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df = pd.read_csv(clim_var_csv_path, index_col=False, sep=' ')
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df.index = pd.to_datetime(df.Year, format = '%Y') + pd.to_timedelta(df.Hour, unit='h')
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df= df.drop(columns=['Year', 'Hour'])
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#df.columns = [NODE+'_Sal'] #, NODE+'_Tem']
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df.columns = [NODE + '_'+ variable + '_'+ f]
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#df = df.loc[~df.index.duplicated(keep='first')]
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Summary_df = pd.concat([Summary_df, df], axis=1)
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out_path = input_directory + '/' + f + '_' + variable + '4.csv'
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print('writing ' + out_path)
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Summary_df.to_csv(out_path)
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#Optionally cut down the summary df to common years
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if Subset_years:
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Summary_df = Summary_df[datetime.strptime(str(startyear) + ' 01 01', '%Y %m %d').date():datetime.strptime(str(endyear) + ' 06 31', '%Y %m %d').date()]
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WQ_Summary_df = pd.concat([WQ_Summary_df ,Summary_df], axis=1, join='outer')
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#==========================================================#
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##==========================================================#
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##data extraction for RMA2 variables
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##==========================================================#
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#HD_Summary_df = pd.DataFrame()
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#for variable in HDvariables:
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# Summary_df = pd.DataFrame()
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# df = pd.DataFrame()
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# for f in fs:
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# #set input and output directories
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# input_directory = 'H:/WRL_Projects/Hunter_CC_Modeling/Module_6/03_Results/Output/' + f
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# # Set working direcotry (where postprocessed NARClIM data is located)
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# os.chdir(input_directory)
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# #==========================================================#
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# #Load data file
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# if variable == 'depth' or variable == 'elev':
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# Clim_Var_CSVs = glob.glob('*' + variable + '*')
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# clim_var_csv_path = Clim_Var_CSVs[0]
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# df = pd.read_csv(clim_var_csv_path, index_col=False, sep=' ')
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# df.index = pd.to_datetime(df.Year, format = '%Y') + pd.to_timedelta(df.Hour, unit='h')
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# df= df.drop(columns=['Year', 'Hour'])
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# a=len(df.columns)-1
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# df=df.iloc[:,:a]
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# if variable == 'vel':
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# #x velocity
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# Clim_Var_CSVs = glob.glob('*' +'x'+ variable + '*')
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# clim_var_csv_path = Clim_Var_CSVs[0]
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# df = pd.read_csv(clim_var_csv_path, index_col=False, sep=' ')
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# df.index = pd.to_datetime(df.Year, format = '%Y') + pd.to_timedelta(df.Hour, unit='h')
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# dfx= df.drop(columns=['Year', 'Hour','1'])
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# #y velocity
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# Clim_Var_CSVs = glob.glob('*' +'y'+ variable + '*')
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# clim_var_csv_path = Clim_Var_CSVs[0]
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# df = pd.read_csv(clim_var_csv_path, index_col=False, sep=' ')
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# df.index = pd.to_datetime(df.Year, format = '%Y') + pd.to_timedelta(df.Hour, unit='h')
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# dfy= df.drop(columns=['Year', 'Hour','1'])
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# df = np.sqrt(dfx*dfx + dfy*dfy)
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#
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# df.columns = df.columns + '_'+ variable + '_'+ f
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# Summary_df = pd.concat([Summary_df, df], axis=1, join='outer')
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# #Optionally cut down the summary df to common years
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# if Subset_years:
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# Summary_df = Summary_df[datetime.strptime(str(startyear) + ' 01 01', '%Y %m %d').date():datetime.strptime(str(endyear) + ' 06 31', '%Y %m %d').date()]
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# HD_Summary_df = pd.concat([HD_Summary_df , Summary_df], axis=1, join='outer')
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##==========================================================#
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#
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#
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#
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#
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##==========================================================#
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##generate and safe the final data frame as csv
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##==========================================================#
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#Compound_df = pd.concat([WQ_Summary_df , HD_Summary_df], axis=1, join='outer')
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#var = 'Scn_'
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#for f in fs:
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# var = var+ '_' + f
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#WQvars = 'WQ'
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#for variabs in WQvariables:
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# WQvars = WQvars + '_' + variabs
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#out_path = output_directory + var + '_' + WQvars + '_' + str(startyear) + '_' + str(endyear) + '_compound.csv'
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#Compound_df.to_csv(out_path)
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# #==========================================================#
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#
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#
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# -*- coding: utf-8 -*-
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#==========================================================#
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#Last Updated - June 2018
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#@author: z5025317 Valentin Heimhuber
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#code for creating climate prioritization plots for NARCLIM variables.
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#Inputs: Uses CSV files that contain all 12 NARCLIM model runs time series for 1 grid cell created with: P1_NARCliM_NC_to_CSV_CCRC_SS.py
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#==========================================================#
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#Load packages
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#==========================================================#
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import numpy as np
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import os
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import pandas as pd
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import glob
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import matplotlib
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import matplotlib.pyplot as plt
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from datetime import datetime
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from datetime import timedelta
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from matplotlib.backends.backend_pdf import PdfPages
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from ggplot import *
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matplotlib.style.use('ggplot')
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#==========================================================#
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#Input parameters
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#==========================================================#
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# Set working direcotry (where postprocessed NARClIM data is located)
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#set beginning and end years and corresponding scenario code
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fs=['Hwq003', 'Hwq005']
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comparison_code = '003v005'
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startyear=1999
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endyear=1999
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year=range(startyear, endyear+1)
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#set directory path for in and output files
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output_directory = 'C:/Users/z5025317/OneDrive - UNSW/Hunter_CC_Modeling/08_Results/Output/Postprocessed' + comparison_code +'/'
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nodes_csv = 'H:/WRL_Projects/Hunter_CC_Modeling/Module_6/03_Results/Chainages/Hunter_nodes.csv'
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Flow_csv = 'H:/WRL_Projects/Hunter_CC_Modeling/Module_6/01_Input/BCGeneration/Scenarios/Calibration/Calibration_Greta.csv'
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png_output_directory = output_directory + '/Figures/'
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variables = ['Sal'] #Tem or Sal
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#read csv file with nodes to extract data from
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#node=[837, 666, 981, 59,527, 34, 1, 391]
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node = pd.read_csv(nodes_csv)['Hunter'].values
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chainages = pd.read_csv(nodes_csv)['x_km'].values
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#set plot parameters
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ALPHA_figs = 1
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font = {'family' : 'sans-serif',
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'weight' : 'normal',
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'size' : 14}
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matplotlib.rc('font', **font)
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#==========================================================#
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#==========================================================#
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#100% automated part of the code doing the data extraction
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#==========================================================
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#output_directory = 'J:/Project wrl2016032/NARCLIM_Raw_Data/Extracted'
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if not os.path.exists(output_directory):
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os.makedirs(output_directory)
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#output_directory = 'J:/Project wrl2016032/NARCLIM_Raw_Data/Extracted'
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if not os.path.exists(png_output_directory):
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os.makedirs(png_output_directory)
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Summary_df = pd.DataFrame()
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for f in fs:
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for NODE in node:
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NODE = str(NODE)
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#set input and output directories
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input_directory = 'C:/Users/z5025317/OneDrive - UNSW/Hunter_CC_Modeling/08_Results/Output/'+ f
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#set directory path for individual png files
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png_output_directory = output_directory + '/Figures/'
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# Set working direcotry (where postprocessed NARClIM data is located)
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os.chdir(input_directory)
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#==========================================================#
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#Load data file
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Clim_Var_CSVs = glob.glob('*'+ NODE + '*WQ*')
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clim_var_csv_path = Clim_Var_CSVs[0]
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df = pd.read_csv(clim_var_csv_path, index_col=False, sep=' ')
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df.index = pd.to_datetime(df.Year, format = '%Y') + pd.to_timedelta(df.Hour, unit='h')
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df= df.drop(columns=['Year', 'Hour'])
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df.columns = [NODE+'_Sal', NODE+'_Tem']
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#append to summary data frame
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if f in ['HCC010', 'HCC042']:
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scname = 'Present'
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if f == 'HCC011':
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scname = 'Near_Future'
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df.index = df.index - (datetime.strptime('2025 01 01', '%Y %m %d').date() - datetime.strptime('1995 01 01', '%Y %m %d').date())
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if f == 'HCC012':
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scname = 'Far_Future'
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df.index = df.index - (datetime.strptime('2065 01 01', '%Y %m %d').date() - datetime.strptime('1995 01 01', '%Y %m %d').date())
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if f in ['HCC040', 'HCC041']:
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scname = 'Present_Resto'
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df.columns = df.columns+'_'+ scname
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Summary_df = pd.concat([Summary_df, df], axis=1, join='outer')
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#cut down the summary df to common years
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Summary_df = Summary_df[datetime.strptime(str(startyear) + ' 01 05', '%Y %m %d').date():datetime.strptime(str(endyear) + ' 12 31', '%Y %m %d').date()]
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Summary_df.tail()
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for variable in variables:
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ii=1
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||||||
|
for NODE in node:
|
||||||
|
NODE = str(NODE)
|
||||||
|
#=========#
|
||||||
|
#comparison time series plot at node
|
||||||
|
#=========#
|
||||||
|
#out name
|
||||||
|
png_out_file_name = comparison_code + '_' + variable + '_' + NODE + '_time_series.png'
|
||||||
|
png_out_path = png_output_directory + '/' + png_out_file_name
|
||||||
|
#
|
||||||
|
plotin_df = Summary_df.filter(regex=variable)
|
||||||
|
plotin_df = plotin_df.filter(regex=NODE)
|
||||||
|
#prepare data frame for plot
|
||||||
|
fig = plt.figure(figsize=(14,18))
|
||||||
|
ax=plt.subplot(4,1,1)
|
||||||
|
#start and end dat of plots
|
||||||
|
plt.title(variable + '_' + NODE + ' - time series')
|
||||||
|
start_date = datetime(int('1996'), int('02'), int('01'))
|
||||||
|
end_date = datetime(int('1996'), int('02'), int('5'))
|
||||||
|
plotin_df1=plotin_df[start_date:end_date]
|
||||||
|
ymin = min(plotin_df1.min()) - 0.01 *min(plotin_df1.min())
|
||||||
|
ymax = max(plotin_df1.max()) + 0.01 *max(plotin_df1.max())
|
||||||
|
plotin_df1.plot(ylim=(ymin,ymax) ,legend=False, ax=ax)
|
||||||
|
#plt.legend( loc=1)
|
||||||
|
plt.xticks([])
|
||||||
|
|
||||||
|
ax=plt.subplot(4,1,2)
|
||||||
|
start_date = datetime(int('1996'), int('02'), int('01'))
|
||||||
|
end_date = datetime(int('1996'), int('02'), int('3'))
|
||||||
|
plotin_df2=plotin_df[start_date:end_date]
|
||||||
|
ymin = min(plotin_df2.min()) - 0.1 *min(plotin_df2.min())
|
||||||
|
ymax = max(plotin_df2.max()) + 0.1 *max(plotin_df2.max())
|
||||||
|
plotin_df2.plot(ylim=(ymin,ymax),legend=False, ax=ax)
|
||||||
|
#plt.legend( loc=1)
|
||||||
|
ax.xaxis.grid(False)
|
||||||
|
|
||||||
|
ax=plt.subplot(4,1,3)
|
||||||
|
plt.title(variable + '_' + NODE + ' - monthly maximum')
|
||||||
|
Monthly_max = plotin_df.resample('M').max()
|
||||||
|
Monthly_max.plot(ax=ax,legend=False)
|
||||||
|
plt.legend( loc=1)
|
||||||
|
ax.xaxis.grid(False)
|
||||||
|
|
||||||
|
ax=plt.subplot(4,1,4)
|
||||||
|
plt.title(variable + '_' + NODE + ' - monthly mean')
|
||||||
|
Monthly_mean = plotin_df.resample('M').mean()
|
||||||
|
Monthly_mean.plot(ax=ax)
|
||||||
|
#plt.legend(bbox_to_anchor=(0., 1.02, 1., .102), loc=3,
|
||||||
|
# ncol=2, mode="expand", borderaxespad=0.)
|
||||||
|
#plt.legend( loc=1)
|
||||||
|
ax.xaxis.grid(False)
|
||||||
|
|
||||||
|
#ax.patch.set_alpha(ALPHA_figs)
|
||||||
|
fig.patch.set_alpha(ALPHA_figs)
|
||||||
|
fig.tight_layout()
|
||||||
|
fig.savefig(png_out_path)
|
||||||
|
plt.close()
|
||||||
|
#=========#
|
||||||
|
|
||||||
|
png_out_file_name = comparison_code + '_' + variable + '_' + NODE + '_exceedance.png'
|
||||||
|
png_out_path = png_output_directory + '/' + png_out_file_name
|
||||||
|
fig = plt.figure(figsize=(10,5))
|
||||||
|
ax=plt.subplot(1,1,1)
|
||||||
|
start_date = datetime(int('1995'), int('02'), int('01'))
|
||||||
|
end_date = datetime(int('1998'), int('12'), int('31'))
|
||||||
|
|
||||||
|
plotin_df3=plotin_df[start_date:end_date]
|
||||||
|
Qhist = plotin_df3.filter(regex='Present')
|
||||||
|
col = Qhist.columns[0]
|
||||||
|
Qhist = Qhist.sort_values(by=[col],ascending=False).values
|
||||||
|
Qnearf = plotin_df3.filter(regex='Near_Future')
|
||||||
|
col = Qnearf.columns[0]
|
||||||
|
Qnearf = Qnearf.sort_values(by=[col],ascending=False).values
|
||||||
|
Qmodern = plotin_df3.filter(regex='Far_Future')
|
||||||
|
col = Qmodern.columns[0]
|
||||||
|
Qmodern = Qmodern.sort_values(by=[col],ascending=False).values
|
||||||
|
Nh = len(Qhist) # number of data points
|
||||||
|
Nm = len(Qmodern)
|
||||||
|
# here's one place types matter: must divide by float not int
|
||||||
|
plt.plot(np.arange(Nh)/float(Nh)*100, Qhist)
|
||||||
|
plt.plot(np.arange(Nm)/float(Nm)*100, Qnearf)
|
||||||
|
plt.plot(np.arange(Nm)/float(Nm)*100, Qmodern)
|
||||||
|
#plt.plot(np.sort(Qmodern)[::-1])
|
||||||
|
plt.xlabel('% Exceedance')
|
||||||
|
if variable == 'Sal':
|
||||||
|
plt.ylabel('Salinity [PSU]')
|
||||||
|
if variable == 'Tem':
|
||||||
|
plt.ylabel('Temperature [C]')
|
||||||
|
plt.legend(['Present', 'Near Future', 'Far Future'])
|
||||||
|
ax.xaxis.grid(False)
|
||||||
|
#ax.patch.set_alpha(ALPHA_figs)
|
||||||
|
fig.patch.set_alpha(ALPHA_figs)
|
||||||
|
fig.tight_layout()
|
||||||
|
fig.savefig(png_out_path)
|
||||||
|
plt.close()
|
||||||
|
|
||||||
@ -0,0 +1,385 @@
|
|||||||
|
# -*- coding: utf-8 -*-
|
||||||
|
#==========================================================#
|
||||||
|
#Last Updated - June 2018
|
||||||
|
#@author: z5025317 Valentin Heimhuber
|
||||||
|
#code for creating climate prioritization plots for NARCLIM variables.
|
||||||
|
#Inputs: Uses CSV files that contain all 12 NARCLIM model runs time series for 1 grid cell created with: P1_NARCliM_NC_to_CSV_CCRC_SS.py
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#Load packages
|
||||||
|
#==========================================================#
|
||||||
|
import numpy as np
|
||||||
|
import os
|
||||||
|
import pandas as pd
|
||||||
|
import glob
|
||||||
|
import matplotlib
|
||||||
|
import matplotlib.pyplot as plt
|
||||||
|
from datetime import datetime
|
||||||
|
from datetime import timedelta
|
||||||
|
from matplotlib.backends.backend_pdf import PdfPages
|
||||||
|
from ggplot import *
|
||||||
|
matplotlib.style.use('ggplot')
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#Input parameters
|
||||||
|
#==========================================================#
|
||||||
|
#set scenario codes and beginning and end years and corresponding scenario code
|
||||||
|
fs=['Hwq003', 'Hwq005']
|
||||||
|
scenario_real_names = ['Present', 'Far_Future']
|
||||||
|
|
||||||
|
variable = 'elev' #depth or vel
|
||||||
|
|
||||||
|
startyear=1999
|
||||||
|
endyear=1999
|
||||||
|
#year=range(startyear, endyear+1)
|
||||||
|
|
||||||
|
#set directory path for output files
|
||||||
|
output_directory = 'H:/WRL_Projects/Hunter_CC_Modeling/Module_6/03_Results/Output/Postprocessed/Figures'
|
||||||
|
|
||||||
|
#set input directories and data
|
||||||
|
#postprocessed RMA results
|
||||||
|
RMA_data_csv = 'H:/WRL_Projects/Hunter_CC_Modeling/Module_6/03_Results/Output/Postprocessed/Compound_data/Scn__Hwq003_Hwq005_WQ_sal_1999_1999compound.csv'
|
||||||
|
#tidal boundary data
|
||||||
|
tides_csv='C:/Users/z5025317/OneDrive - UNSW/Hunter_CC_Modeling/07_Modelling/01_Input/Tide Generator/Tidal Simulation Python Script (BMM)/Tides_1990_2010.csv'
|
||||||
|
#CSV file of mesh nodes and corresponding chainages
|
||||||
|
nodes_csv = 'H:/WRL_Projects/Hunter_CC_Modeling/Module_6/03_Results/Chainages/Hunter_nodes.csv'
|
||||||
|
#River flow boundary
|
||||||
|
Flow_csv = 'H:/WRL_Projects/Hunter_CC_Modeling/Module_6/01_Input/BCGeneration/Scenarios/Calibration/Calibration_Greta.csv'
|
||||||
|
#==========================================================#
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#set plot parameters
|
||||||
|
ALPHA_figs = 1
|
||||||
|
font = {'family' : 'sans-serif',
|
||||||
|
'weight' : 'normal',
|
||||||
|
'size' : 14}
|
||||||
|
matplotlib.rc('font', **font)
|
||||||
|
#==========================================================#
|
||||||
|
|
||||||
|
|
||||||
|
#========================================================#
|
||||||
|
#automated part of the code doing the data extraction
|
||||||
|
#==========================================================
|
||||||
|
|
||||||
|
#read csv file with extracted RMA data
|
||||||
|
RMA.df = pd.read_csv(RMA_data_csv, parse_dates=True, index_col=0)
|
||||||
|
|
||||||
|
#read csv file with nodes to extract data from
|
||||||
|
node = pd.read_csv(nodes_csv)['Hunter'].values
|
||||||
|
chainages = pd.read_csv(nodes_csv)['x_km'].values
|
||||||
|
|
||||||
|
#Load boundary flow data
|
||||||
|
Flow_df = pd.read_csv(Flow_csv, parse_dates=True, index_col=0)['Q[ML/d]']
|
||||||
|
Flow_df.columns = ['Q[ML/d]']
|
||||||
|
Flow_df = Flow_df[datetime.strptime(str(startyear) + ' 07 13', '%Y %m %d').date():datetime.strptime(str(2005) + ' 07 19', '%Y %m %d').date()]
|
||||||
|
flowannual = Flow_df.resample('A').mean()
|
||||||
|
Flow_df.resample('A').mean().plot()
|
||||||
|
|
||||||
|
#Load tide boundary data
|
||||||
|
tides_df = pd.read_csv(tides_csv, parse_dates=True, index_col=0)
|
||||||
|
tides_df.columns = ['tide']
|
||||||
|
|
||||||
|
|
||||||
|
#append to summary data frame
|
||||||
|
if f in ['HCC010', 'HCC042']:
|
||||||
|
scname = 'Present'
|
||||||
|
if f == 'HCC011':
|
||||||
|
scname = 'Near_Future'
|
||||||
|
df.index = df.index - (datetime.strptime('2025 01 01', '%Y %m %d').date() - datetime.strptime('1995 01 01', '%Y %m %d').date())
|
||||||
|
if f == 'HCC012':
|
||||||
|
scname = 'Far_Future'
|
||||||
|
df.index = df.index - (datetime.strptime('2065 01 01', '%Y %m %d').date() - datetime.strptime('1995 01 01', '%Y %m %d').date())
|
||||||
|
if f in ['HCC040', 'HCC041']:
|
||||||
|
scname = 'Present_Resto'
|
||||||
|
df.columns = df.columns+'_'+ scname
|
||||||
|
|
||||||
|
#cut down the summary df to common years
|
||||||
|
Summary_df = Summary_df[datetime.strptime(str(startyear) + ' 07 13', '%Y %m %d').date():datetime.strptime(str(endyear) + ' 07 19', '%Y %m %d').date()]
|
||||||
|
Summary_df.tail()
|
||||||
|
#Summary_df.columns = chainages
|
||||||
|
#type(Summary_df.index)
|
||||||
|
|
||||||
|
#cut down the summary df to common years
|
||||||
|
Summary_df = Summary_df[datetime.strptime(str(startyear) + ' 01 05', '%Y %m %d').date():datetime.strptime(str(endyear) + ' 12 31', '%Y %m %d').date()]
|
||||||
|
Summary_df.tail()
|
||||||
|
|
||||||
|
|
||||||
|
variables = ['Sal']
|
||||||
|
|
||||||
|
Present_df = Summary_df.filter(regex='Present')
|
||||||
|
Present_df.columns
|
||||||
|
|
||||||
|
Far_future_df = Summary_df.filter(regex='Far')
|
||||||
|
Far_future_df.columns
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#Tidal analysis
|
||||||
|
#==========================================================#
|
||||||
|
#read in tide data
|
||||||
|
Plot_scenario = 'Flood'
|
||||||
|
ylims = [-1.1,8]
|
||||||
|
tides_df = tides_df[datetime.strptime(str(startyear) + ' 07 13', '%Y %m %d').date():datetime.strptime(str(endyear) + ' 07 19', '%Y %m %d').date()]
|
||||||
|
|
||||||
|
central_tides_df = tides_df[datetime.strptime(str(startyear) + ' 07 16', '%Y %m %d').date():datetime.strptime(str(endyear) + ' 07 16', '%Y %m %d').date()]
|
||||||
|
maxtide_index = central_tides_df['tide'].idxmax()
|
||||||
|
tides_df['tide'].max()
|
||||||
|
end_maxtide_index = maxtide_index + timedelta(days=0.4)
|
||||||
|
beg_maxtide_index = maxtide_index - timedelta(days=0.2)
|
||||||
|
short_tides_df = tides_df[beg_maxtide_index: end_maxtide_index]
|
||||||
|
short_tides_df.plot(cmap='viridis', legend=True)
|
||||||
|
mintide_index = short_tides_df['tide'].idxmin()
|
||||||
|
|
||||||
|
#plot the minimum and maximum elevation along the estuary occuring within a single tidal cycle
|
||||||
|
Short_tide_elev_df = Summary_df[min(short_tides_df.index):max(short_tides_df.index)]
|
||||||
|
max_min_1cycle_elev_0slr = pd.concat([Short_tide_elev_df.filter(regex='Present').max(), Short_tide_elev_df.filter(regex='Present').min()], axis=1, join='inner')
|
||||||
|
max_min_1cycle_elev_09slr = pd.concat([Short_tide_elev_df.filter(regex='Far').max(), Short_tide_elev_df.filter(regex='Far').min()], axis=1, join='inner')
|
||||||
|
max_min_1cycle_elev_0slr.index = chainages
|
||||||
|
max_min_1cycle_elev_09slr.index = chainages
|
||||||
|
max_min_1cycle_elev = pd.concat([max_min_1cycle_elev_0slr, max_min_1cycle_elev_09slr], axis=1, join='outer')
|
||||||
|
max_min_1cycle_elev.columns = ['MaxElev 0 SLR','MinElev 0 SLR','MaxElev 0.9 SLR','MinElev 0.9 SLR' ]
|
||||||
|
max_min_1cycle_elev.plot(cmap='viridis', legend=True)
|
||||||
|
|
||||||
|
#plot the elevation along the estuary at exactly the time of high and low tide
|
||||||
|
max_min_extime_elev_0slr = pd.concat([Summary_df.filter(regex='Present').loc[maxtide_index], Summary_df.filter(regex='Present').loc[mintide_index]], axis=1, join='outer')
|
||||||
|
max_min_extime_elev_09slr = pd.concat([Summary_df.filter(regex='Far').loc[maxtide_index], Summary_df.filter(regex='Far').loc[mintide_index]], axis=1, join='outer')
|
||||||
|
max_min_extime_elev_0slr.index = chainages
|
||||||
|
max_min_extime_elev_09slr.index = chainages
|
||||||
|
max_min_extime_elev = pd.concat([max_min_extime_elev_0slr, max_min_extime_elev_09slr], axis=1, join='outer')
|
||||||
|
max_min_extime_elev.columns = ['HigT Elev 0SLR','LowT Elev 0SLR','HigT Elev 0.9 SLR','LowT Elev 0.9 SLR' ]
|
||||||
|
max_min_extime_elev.plot(cmap='viridis', legend=True)
|
||||||
|
|
||||||
|
png_out_name = png_output_directory + variable + '_high_low_tide_analysis_' + Plot_scenario + '.pdf'
|
||||||
|
fig = plt.figure(figsize=(17,20))
|
||||||
|
ax=plt.subplot(3,1,1)
|
||||||
|
plt.title('Max and min water surface elevation along the estuary over one tidal cycle')
|
||||||
|
ax.set_prop_cycle(color=['slateblue', 'slateblue', 'tomato', 'tomato'], linestyle=['--', '-', '--', '-'], lw=[2,2,2,2])
|
||||||
|
max_min_1cycle_elev.plot( legend=False, ax=ax)
|
||||||
|
plt.axhline(y=0, color='slateblue', linestyle='--', lw=1, alpha=0.5)
|
||||||
|
plt.axhline(y=0.9, color='tomato', linestyle='--', lw=1, alpha=0.5)
|
||||||
|
plt.ylim(ylims)
|
||||||
|
plt.ylabel("Water level [m AHD]")
|
||||||
|
plt.xlabel("Distance from ocean boundary [km]")
|
||||||
|
# Put a legend to the right of the current axis
|
||||||
|
#lgd = ax.legend(loc='center left', bbox_to_anchor=(1, 0.5))
|
||||||
|
ax.legend()
|
||||||
|
#plot tides
|
||||||
|
ax=plt.subplot(3,1,2)
|
||||||
|
plt.title('Max and min water surface elevation along the estuary at time of high & low tide')
|
||||||
|
ax.set_prop_cycle(color=['slateblue', 'slateblue', 'tomato', 'tomato'], linestyle=['--', '-', '--', '-'], lw=[2,2,2,2])
|
||||||
|
max_min_extime_elev.plot(legend=False, ax=ax)
|
||||||
|
plt.ylabel("Water level [m AHD]")
|
||||||
|
plt.ylim(ylims)
|
||||||
|
plt.xlabel("Distance from ocean boundary [km]")
|
||||||
|
#lgd = ax.legend(loc='center left', bbox_to_anchor=(1, 0.5))
|
||||||
|
ax.legend()
|
||||||
|
#plot tides
|
||||||
|
ax=plt.subplot(3,1,3)
|
||||||
|
plt.ylim(ylims)
|
||||||
|
plt.title('Tide at open ocean boundary')
|
||||||
|
short_tides_df.plot(cmap='viridis', legend=False, ax=ax)
|
||||||
|
ax.axvline(maxtide_index, color='black', linestyle='--')
|
||||||
|
ax.axvline(mintide_index, color='black', linestyle='-')
|
||||||
|
plt.xlabel("Time")
|
||||||
|
plt.ylabel("Water level [m AHD]")
|
||||||
|
#lgd = ax.legend(loc='center left', bbox_to_anchor=(1, 0.5))
|
||||||
|
ax.legend()
|
||||||
|
fig.tight_layout()
|
||||||
|
fig.savefig(png_out_name)
|
||||||
|
plt.close()
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#animate 2 tidal cycles baseline scenario:
|
||||||
|
#==========================================================#
|
||||||
|
Six_day_tide_elev_df = Summary_df.filter(regex='Present')[maxtide_index - timedelta(days=2): maxtide_index + timedelta(days=3)]
|
||||||
|
Six_day_tide_elev_df.columns = chainages
|
||||||
|
Six_day_tides_df = tides_df[maxtide_index - timedelta(days=2): maxtide_index + timedelta(days=3)]
|
||||||
|
Six_day_tides_df.plot(cmap='viridis', legend=True)
|
||||||
|
|
||||||
|
Six_day_flow_df = Flow_df[maxtide_index - timedelta(days=2): maxtide_index + timedelta(days=3)]
|
||||||
|
Six_day_flow_df = pd.concat([Six_day_tides_df, Six_day_flow_df], axis=1, join='outer')['Q[ML/d]'].interpolate()
|
||||||
|
Six_day_flow_df.plot(cmap='viridis', legend=True)
|
||||||
|
|
||||||
|
|
||||||
|
ii=1
|
||||||
|
for index in Six_day_tide_elev_df.index:
|
||||||
|
#index = Six_day_tide_elev_df.index[1]
|
||||||
|
png_out_path = output_directory + '/TidalCycle_' + variable + '_' + Plot_scenario + '3/'
|
||||||
|
if not os.path.exists(png_out_path):
|
||||||
|
os.makedirs(png_out_path)
|
||||||
|
#png_out_name = png_out_path + str(index) + 'longitudinalXS.png'
|
||||||
|
png_out_name = png_out_path + str(ii) + variable + '_longitudinalXS.png'
|
||||||
|
fig = plt.figure(figsize=(17,20))
|
||||||
|
ax=plt.subplot(3,1,1)
|
||||||
|
plt.title('Water surface elevation along the estuary')
|
||||||
|
Six_day_tide_elev_df.loc[index].plot(color='blue', legend=False)
|
||||||
|
#plt.axhline(y=0, color='r', linestyle='--', lw=1, alpha=0.5)
|
||||||
|
plt.axhline(tides_df.loc[index].values, color='black',lw=0.5, linestyle='--')
|
||||||
|
plt.ylim(ylims)
|
||||||
|
plt.ylabel("Water level [m AHD]")
|
||||||
|
plt.xlabel("Distance from ocean boundary [km]")
|
||||||
|
#plot tides
|
||||||
|
ax=plt.subplot(3,1,2)
|
||||||
|
plt.ylim(-1.1,1.3)
|
||||||
|
plt.title('Tide at open ocean boundary')
|
||||||
|
Six_day_tides_df.plot(cmap='viridis', legend=False, ax=ax)
|
||||||
|
ax.axvline(index, color='green', linestyle='--')
|
||||||
|
plt.xlabel("Time")
|
||||||
|
plt.ylabel("Water level [m AHD]")
|
||||||
|
|
||||||
|
ax=plt.subplot(3,1,3)
|
||||||
|
#plt.ylim(ylims)
|
||||||
|
plt.title('Tide at open ocean boundary')
|
||||||
|
Six_day_flow_df.plot(color='black', legend=False, ax=ax)
|
||||||
|
ax.axvline(index, color='green', linestyle='--')
|
||||||
|
plt.xlabel("Time")
|
||||||
|
plt.ylabel("Hunter Inflow [ML/day]")
|
||||||
|
|
||||||
|
fig.tight_layout()
|
||||||
|
fig.savefig(png_out_name)
|
||||||
|
plt.close()
|
||||||
|
ii=ii+1
|
||||||
|
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#animate 2 tidal cycles baseline + SLR scenario:
|
||||||
|
#==========================================================#
|
||||||
|
Six_day_tide_elev_df_0slr = Summary_df.filter(regex='Present')[maxtide_index - timedelta(days=1): maxtide_index + timedelta(days=1)]
|
||||||
|
Six_day_tide_elev_df_0slr.columns = chainages
|
||||||
|
Six_day_tide_elev_df_09slr = Summary_df.filter(regex='Far')[maxtide_index - timedelta(days=1): maxtide_index + timedelta(days=1)]
|
||||||
|
Six_day_tide_elev_df_09slr.columns = chainages
|
||||||
|
Six_day_tides_df = tides_df[maxtide_index - timedelta(days=1): maxtide_index + timedelta(days=1.5)]
|
||||||
|
Six_day_tides_df.plot(cmap='viridis', legend=True)
|
||||||
|
|
||||||
|
ii=0
|
||||||
|
for index in Six_day_tide_elev_df_0slr.index:
|
||||||
|
ii=ii+1
|
||||||
|
#index = Six_day_tide_elev_df.index[1]
|
||||||
|
png_out_path = output_directory + '/TidalCycle_SLR_' + variable + '_' + Plot_scenario + '/'
|
||||||
|
if not os.path.exists(png_out_path):
|
||||||
|
os.makedirs(png_out_path)
|
||||||
|
#png_out_name = png_out_path + str(index) + 'longitudinalXS.png'
|
||||||
|
png_out_name = png_out_path + str(ii) + variable + '_longitudinalXS.png'
|
||||||
|
max_min_extime_elev_both = pd.concat([Six_day_tide_elev_df_0slr.loc[index], Six_day_tide_elev_df_09slr.loc[index]], axis=1, join='outer')
|
||||||
|
max_min_extime_elev_both.columns = ['Present Day','0.9m SLR']
|
||||||
|
|
||||||
|
fig = plt.figure(figsize=(17,12))
|
||||||
|
ax=plt.subplot(2,1,1)
|
||||||
|
plt.ylim(ylims)
|
||||||
|
plt.title('Water surface elevation along the estuary')
|
||||||
|
ax.set_prop_cycle(color=['slateblue','tomato'], linestyle=['-', '-'], lw=[2,2])
|
||||||
|
max_min_extime_elev_both.plot(ax=ax)
|
||||||
|
ax.legend(loc=1)
|
||||||
|
plt.axhline(y=0, color='r', linestyle='--', lw=1, alpha=0.5)
|
||||||
|
plt.ylim(-1.1,2.5)
|
||||||
|
plt.ylabel("Water level [m AHD]")
|
||||||
|
plt.xlabel("Distance from ocean boundary [km]")
|
||||||
|
|
||||||
|
#plot tides
|
||||||
|
ax=plt.subplot(2,1,2)
|
||||||
|
plt.ylim(-1.1,1.5)
|
||||||
|
plt.title('Tide at open ocean boundary')
|
||||||
|
Six_day_tides_df.plot(cmap='viridis', legend=False, ax=ax)
|
||||||
|
ax.axvline(index, color='green', linestyle='--')
|
||||||
|
plt.xlabel("Time")
|
||||||
|
plt.ylabel("Water level [m AHD]")
|
||||||
|
fig.tight_layout()
|
||||||
|
fig.savefig(png_out_name)
|
||||||
|
plt.close()
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
for NODE in node:
|
||||||
|
NODE = str(NODE)
|
||||||
|
#=========#
|
||||||
|
#comparison time series plot at node
|
||||||
|
#=========#
|
||||||
|
#out name
|
||||||
|
png_out_file_name = comparison_code + '_' + variable + '_' + NODE + '_time_series.png'
|
||||||
|
png_out_path = png_output_directory + '/' + png_out_file_name
|
||||||
|
#
|
||||||
|
plotin_df = Summary_df.filter(regex=NODE)
|
||||||
|
#prepare data frame for plot
|
||||||
|
fig = plt.figure(figsize=(14,18))
|
||||||
|
ax=plt.subplot(4,1,1)
|
||||||
|
#start and end dat of plots
|
||||||
|
plt.title(variable + '_' + NODE + ' - time series')
|
||||||
|
start_date = datetime(int('1996'), int('02'), int('01'))
|
||||||
|
end_date = datetime(int('1996'), int('02'), int('5'))
|
||||||
|
plotin_df1=plotin_df[start_date:end_date]
|
||||||
|
ymin = min(plotin_df1.min()) - 0.01 *min(plotin_df1.min())
|
||||||
|
ymax = max(plotin_df1.max()) + 0.01 *max(plotin_df1.max())
|
||||||
|
plotin_df1.plot(ylim=(ymin,ymax) ,legend=False, ax=ax)
|
||||||
|
#plt.legend( loc=1)
|
||||||
|
plt.xticks([])
|
||||||
|
|
||||||
|
ax=plt.subplot(4,1,2)
|
||||||
|
start_date = datetime(int('1996'), int('02'), int('01'))
|
||||||
|
end_date = datetime(int('1996'), int('02'), int('3'))
|
||||||
|
plotin_df2=plotin_df[start_date:end_date]
|
||||||
|
ymin = min(plotin_df2.min()) - 0.1 *min(plotin_df2.min())
|
||||||
|
ymax = max(plotin_df2.max()) + 0.1 *max(plotin_df2.max())
|
||||||
|
plotin_df2.plot(ylim=(ymin,ymax),legend=False, ax=ax)
|
||||||
|
#plt.legend( loc=1)
|
||||||
|
ax.xaxis.grid(False)
|
||||||
|
|
||||||
|
ax=plt.subplot(4,1,3)
|
||||||
|
plt.title(variable + '_' + NODE + ' - monthly maximum')
|
||||||
|
Monthly_max = plotin_df.resample('M').max()
|
||||||
|
Monthly_max.plot(ax=ax,legend=False)
|
||||||
|
plt.legend( loc=1)
|
||||||
|
ax.xaxis.grid(False)
|
||||||
|
|
||||||
|
ax=plt.subplot(4,1,4)
|
||||||
|
plt.title(variable + '_' + NODE + ' - monthly mean')
|
||||||
|
Monthly_mean = plotin_df.resample('M').mean()
|
||||||
|
Monthly_mean.plot(ax=ax)
|
||||||
|
#plt.legend(bbox_to_anchor=(0., 1.02, 1., .102), loc=3,
|
||||||
|
# ncol=2, mode="expand", borderaxespad=0.)
|
||||||
|
#plt.legend( loc=1)
|
||||||
|
ax.xaxis.grid(False)
|
||||||
|
|
||||||
|
#ax.patch.set_alpha(ALPHA_figs)
|
||||||
|
fig.patch.set_alpha(ALPHA_figs)
|
||||||
|
fig.tight_layout()
|
||||||
|
fig.savefig(png_out_path)
|
||||||
|
plt.close()
|
||||||
|
#=========#
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -0,0 +1,107 @@
|
|||||||
|
# Set working direcotry where python code is located and results are to be stored
|
||||||
|
import os
|
||||||
|
os.chdir('H:/WRL_Projects/Hunter_CC_Modeling/Code/RMA_result_explorer')
|
||||||
|
from pylab import *
|
||||||
|
import sys
|
||||||
|
from py_rmatools import rma
|
||||||
|
import pandas as pd
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#Input parameters
|
||||||
|
#==========================================================#
|
||||||
|
#print "Enter the RMA filename (without extension):"
|
||||||
|
#f=raw_input()
|
||||||
|
|
||||||
|
#set beginning and end years and corresponding scenario code
|
||||||
|
run='Hwq003'
|
||||||
|
startyear=1999
|
||||||
|
endyear=1999
|
||||||
|
year=range(startyear, endyear+1)
|
||||||
|
|
||||||
|
print('extracting WQ data for' + run)
|
||||||
|
|
||||||
|
#set run directory where RMA results are located
|
||||||
|
run_directory = 'H:/WRL_Projects/Hunter_CC_Modeling/Module_6/02_Simulations/' + run +'/'
|
||||||
|
#set directory path for output files
|
||||||
|
output_directory = 'H:/WRL_Projects/Hunter_CC_Modeling/Module_6/03_Results/Output_gridded1/'+ run + '/'
|
||||||
|
|
||||||
|
#set model element nodes from chainage file
|
||||||
|
#node=[666, 59,527]
|
||||||
|
#read csv file with nodes to extract data from
|
||||||
|
nodes_csv = 'H:/WRL_Projects/Hunter_CC_Modeling/Module_6/03_Results/Chainages/Hunter_nodes_gridded.csv'
|
||||||
|
node = pd.read_csv(nodes_csv)['Hunter'].values
|
||||||
|
#==========================================================#
|
||||||
|
|
||||||
|
#output_directory = 'J:/Project wrl2016032/NARCLIM_Raw_Data/Extracted'
|
||||||
|
if not os.path.exists(output_directory):
|
||||||
|
os.makedirs(output_directory)
|
||||||
|
print('-------------------------------------------')
|
||||||
|
print("output directory folder didn't exist and was generated")
|
||||||
|
print('-------------------------------------------')
|
||||||
|
time=[]
|
||||||
|
files=[]
|
||||||
|
|
||||||
|
for ii in node:
|
||||||
|
files.append(output_directory + run + '_%d_WQ.txt' %ii)
|
||||||
|
|
||||||
|
I_const=[1]
|
||||||
|
|
||||||
|
for kk in list(enumerate(node)):
|
||||||
|
target = open(files[kk[0]], 'w')
|
||||||
|
target.write("Year Hour")
|
||||||
|
for ii in I_const:
|
||||||
|
target.write(" %d" %(ii))
|
||||||
|
target.write("\n")
|
||||||
|
target.close()
|
||||||
|
|
||||||
|
|
||||||
|
for jj in year:
|
||||||
|
print(jj)
|
||||||
|
f=run_directory + run +'_%d_SAL' %jj
|
||||||
|
R=rma()
|
||||||
|
R.open(f)
|
||||||
|
while R.next():
|
||||||
|
time.append(R.time)
|
||||||
|
for kk in list(enumerate(node)):
|
||||||
|
target = open(files[kk[0]], 'a')
|
||||||
|
target.write("%i %f" %(jj,time[-1]))
|
||||||
|
for ii in I_const:
|
||||||
|
target.write(" %f" %(R.constit[ii][kk[1]]))
|
||||||
|
target.write("\n")
|
||||||
|
target.close()
|
||||||
|
|
||||||
|
###########################
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
#I_const=[1,2]
|
||||||
|
#filename1= output_directory + run + '_SAL.txt'
|
||||||
|
#target = open(filename1, 'w')
|
||||||
|
#target.write("Year Hour ")
|
||||||
|
#for inode in node:
|
||||||
|
# target.write("%i " % inode)
|
||||||
|
#target.write('\n')
|
||||||
|
#print (filename1)
|
||||||
|
#for jj in year:
|
||||||
|
# f1=run_directory + run + '_%d' %jj
|
||||||
|
# R=rma()
|
||||||
|
# print(f1)
|
||||||
|
# R.open(f1)
|
||||||
|
# print (jj)
|
||||||
|
# while R.next():
|
||||||
|
# time.append(R.time)
|
||||||
|
# for kk in list(enumerate(node)):
|
||||||
|
# target.write("%i %f" %(jj,time[-1]))
|
||||||
|
# target.write(" %f" %(R.constit[I_const[ii]][kk[1]]))
|
||||||
|
# target.write('\n')
|
||||||
|
#target.close()
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#for kk in node:
|
||||||
|
#
|
||||||
|
# filename1='DataCR046_%d_.txt' %kk
|
||||||
|
|
||||||
|
|
||||||
|
#
|
||||||
@ -0,0 +1,291 @@
|
|||||||
|
# -*- coding: utf-8 -*-
|
||||||
|
#==========================================================#
|
||||||
|
#Last Updated - June 2018
|
||||||
|
#@author: z5025317 Valentin Heimhuber
|
||||||
|
#code for processing RMA11 water quality results - using gridded approach instead of a chainage line (estuary longitudinal line)
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#Load packages
|
||||||
|
#==========================================================#
|
||||||
|
import geopandas as gpd
|
||||||
|
import numpy as np
|
||||||
|
import os
|
||||||
|
import pandas as pd
|
||||||
|
import glob
|
||||||
|
import matplotlib
|
||||||
|
import matplotlib.pyplot as plt
|
||||||
|
from datetime import datetime
|
||||||
|
from datetime import timedelta
|
||||||
|
from matplotlib.backends.backend_pdf import PdfPages
|
||||||
|
from ggplot import *
|
||||||
|
matplotlib.style.use('ggplot')
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#Input parameters
|
||||||
|
#==========================================================#
|
||||||
|
#set scenario codes and beginning and end years and corresponding scenario code
|
||||||
|
fs=['Hwq003', 'Hwq005']
|
||||||
|
scenario_real_names = ['Present', '0.9m SLR']
|
||||||
|
WQvariables = ['SALINITY']
|
||||||
|
variable = 'elev' #depth or vel
|
||||||
|
|
||||||
|
maxrowsincsv = 15000
|
||||||
|
|
||||||
|
#name of scenario
|
||||||
|
Plot_scenario = 'HD_grid_V1'
|
||||||
|
ylims = [0,40]
|
||||||
|
|
||||||
|
#time frames for analysis
|
||||||
|
startdate = '1999 01 01'
|
||||||
|
enddate = '2000 12 30'
|
||||||
|
tideanalysis_day = '1999 05 26'
|
||||||
|
#year=range(startyear, endyear+1)
|
||||||
|
|
||||||
|
#load and refine node vs mesh shapefile to store the results of the statistics
|
||||||
|
Node_mesh = gpd.read_file('H:/WRL_Projects/Hunter_CC_Modeling/Module_6/03_Results/GIS_data/Mesh_Node_GIS_Setup/hcc002_fishnet_500m_V3_joinXY.shp')
|
||||||
|
Node_mesh.index = Node_mesh['Field1']
|
||||||
|
Node_mesh = Node_mesh.iloc[:,-4:]
|
||||||
|
Node_mesh.columns = ['Node', 'X', 'Y', 'geometry']
|
||||||
|
node = Node_mesh['Node'].values
|
||||||
|
chainages = node
|
||||||
|
Node_mesh.plot()
|
||||||
|
|
||||||
|
#set directory path for output files
|
||||||
|
output_directory = 'H:/WRL_Projects/Hunter_CC_Modeling/Module_6/03_Results/Output/Postprocessed/' + Plot_scenario + '/Figures/'
|
||||||
|
|
||||||
|
#set input directories and data
|
||||||
|
#tidal boundary data
|
||||||
|
tides_csv='C:/Users/z5025317/OneDrive - UNSW/Hunter_CC_Modeling/07_Modelling/01_Input/Tide Generator/Tidal Simulation Python Script (BMM)/Tides_1990_2010.csv'
|
||||||
|
#CSV file of mesh nodes and corresponding chainages
|
||||||
|
nodes_csv = 'H:/WRL_Projects/Hunter_CC_Modeling/Module_6/03_Results/Chainages/Hunter_nodes.csv'
|
||||||
|
#River flow boundary
|
||||||
|
Flow_csv = 'H:/WRL_Projects/Hunter_CC_Modeling/Module_6/01_Input/BCGeneration/Scenarios/Calibration/Calibration_Greta.csv'
|
||||||
|
#River bathy
|
||||||
|
bathy_csv = 'H:/WRL_Projects/Hunter_CC_Modeling/Module_6/03_Results/Chainages/Hunter_nodes_bathy.csv'
|
||||||
|
|
||||||
|
#input csv with species and their salinity optima and thresholds
|
||||||
|
salinity_eco_csv = "H:/WRL_Projects/Hunter_CC_Modeling/Module_6/03_Results/Eco_thresholds/Salintiy_Hunter_physiology_V1.csv"
|
||||||
|
salinity_eco_df = pd.read_csv(salinity_eco_csv, index_col=2)
|
||||||
|
salinity_eco_df = salinity_eco_df[salinity_eco_df.index.notnull()]
|
||||||
|
#==========================================================#
|
||||||
|
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#set plot parameters
|
||||||
|
ALPHA_figs = 1
|
||||||
|
font = {'family' : 'sans-serif',
|
||||||
|
'weight' : 'normal',
|
||||||
|
'size' : 14}
|
||||||
|
matplotlib.rc('font', **font)
|
||||||
|
#==========================================================#
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#output_directory = 'J:/Project wrl2016032/NARCLIM_Raw_Data/Extracted'
|
||||||
|
if not os.path.exists(output_directory):
|
||||||
|
os.makedirs(output_directory)
|
||||||
|
print('-------------------------------------------')
|
||||||
|
print("output directory folder didn't exist and was generated")
|
||||||
|
print('-------------------------------------------')
|
||||||
|
#==========================================================#
|
||||||
|
|
||||||
|
|
||||||
|
#========================================================#
|
||||||
|
#automated part of the code doing the data extraction
|
||||||
|
#==========================================================
|
||||||
|
|
||||||
|
#Load boundary flow data
|
||||||
|
Flow_df = pd.read_csv(Flow_csv, parse_dates=True, dayfirst=True, index_col=0)['Q[ML/d]']
|
||||||
|
Flow_df.columns = ['Q[ML/d]']
|
||||||
|
Flow_df = Flow_df[datetime.strptime(startdate , '%Y %m %d').date():datetime.strptime(enddate, '%Y %m %d').date()]
|
||||||
|
|
||||||
|
#Load tide boundary data
|
||||||
|
tides_dfm = pd.read_csv(tides_csv, parse_dates=True, index_col=0)
|
||||||
|
tides_dfm.columns = ['tide']
|
||||||
|
|
||||||
|
#Load bathymetry data
|
||||||
|
bathy_dfm = pd.read_csv(bathy_csv, index_col=0)
|
||||||
|
bathy_dfm.plot()
|
||||||
|
|
||||||
|
#read csv file with extracted RMA data
|
||||||
|
#RMA_df = pd.read_csv(RMA_data_csv, parse_dates=True, index_col=0)
|
||||||
|
|
||||||
|
#load RMA2 data
|
||||||
|
HD_Summary_df = pd.DataFrame()
|
||||||
|
for variable in WQvariables:
|
||||||
|
Summary_df = pd.DataFrame()
|
||||||
|
df = pd.DataFrame()
|
||||||
|
for f in fs:
|
||||||
|
#set input and output directories
|
||||||
|
input_directory = 'H:/WRL_Projects/Hunter_CC_Modeling/Module_6/03_Results/Output/Raw/Output_gridded1/' + f
|
||||||
|
# Set working direcotry (where postprocessed NARClIM data is located)
|
||||||
|
os.chdir(input_directory)
|
||||||
|
#==========================================================#
|
||||||
|
#Load data file
|
||||||
|
Clim_Var_CSVs = glob.glob('*' + variable + '*')
|
||||||
|
clim_var_csv_path = Clim_Var_CSVs[0]
|
||||||
|
df = pd.read_csv(clim_var_csv_path, index_col=False)
|
||||||
|
df.index = pd.to_datetime(df.Year, format = '%Y') + pd.to_timedelta(df.Hour, unit='h')
|
||||||
|
df= df.drop(columns=['Year', 'Hour'])
|
||||||
|
#df.columns = [NODE+'_Sal'] #, NODE+'_Tem']
|
||||||
|
df.columns = [s + variable + '_'+ f for s in df.columns]
|
||||||
|
#cut down the df to start and end date
|
||||||
|
df = df[datetime.strptime(startdate , '%Y %m %d').date():datetime.strptime(enddate, '%Y %m %d').date()]
|
||||||
|
Summary_df = pd.concat([Summary_df, df], axis=1, join='outer')
|
||||||
|
HD_Summary_df = pd.concat([HD_Summary_df , Summary_df], axis=1, join='outer')
|
||||||
|
|
||||||
|
#subset the input data frame
|
||||||
|
Present_df = HD_Summary_df.filter(regex='Hwq003')
|
||||||
|
Present_df.columns = chainages
|
||||||
|
Far_future_df = HD_Summary_df.filter(regex='Hwq005')
|
||||||
|
Far_future_df.columns = chainages
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
#do statistics to summarize the time series based on optimum, min and max thresholds
|
||||||
|
salinity_eco_df.columns
|
||||||
|
variable = 'Sal'
|
||||||
|
for index, row in salinity_eco_df.iterrows():
|
||||||
|
print row["Minimum optimal"]
|
||||||
|
print row["Maximum optimal"]
|
||||||
|
print row['# species']
|
||||||
|
print row['Lower treshold']
|
||||||
|
print row['Upper treshold']
|
||||||
|
|
||||||
|
Pres_Sal_median_df = pd.DataFrame(Present_df.median())
|
||||||
|
Pres_Sal_median_df.columns = ['med']
|
||||||
|
Present_df_95 = pd.DataFrame(Present_df.quantile(q=0.95, axis=0))
|
||||||
|
Present_df_05 = pd.DataFrame(Present_df.quantile(q=0.05, axis=0))
|
||||||
|
Present_stats = pd.concat([Present_df_05, Pres_Sal_median_df, Present_df_95], axis=1, join='outer')
|
||||||
|
Present_stats.columns = ['0_' + str(s) for s in Present_stats.columns]
|
||||||
|
|
||||||
|
agg = ('>'+ str(row["Maximum optimal"]) + '_count', lambda x: x.gt(row["Maximum optimal"]).sum()),
|
||||||
|
Present_df_gtTHS = pd.DataFrame(Present_df.resample('A').agg(agg)*100/(365*24*2))
|
||||||
|
Present_df_gtTHS = pd.DataFrame(Present_df_gtTHS.transpose().mean(axis=1))
|
||||||
|
Present_df_gtTHS.columns = [str(int(row['# species'])) + '_0>' + 'MaOp']
|
||||||
|
Present_df_gtTHS.index = chainages
|
||||||
|
|
||||||
|
agg = ('>'+ str(row["Minimum optimal"]) + '_count', lambda x: x.lt(row["Minimum optimal"]).sum()),
|
||||||
|
Present_df_gtTHS_miop = pd.DataFrame(Present_df.resample('A').agg(agg)*100/(365*24*2))
|
||||||
|
Present_df_gtTHS_miop = pd.DataFrame(Present_df_gtTHS_miop.transpose().mean(axis=1))
|
||||||
|
Present_df_gtTHS_miop.columns = [str(int(row['# species'])) + '_0<' + 'MiOp']
|
||||||
|
Present_df_gtTHS_miop.index = chainages
|
||||||
|
|
||||||
|
agg = ('>'+ str(row["Upper treshold"]) + '_count', lambda x: x.gt(row["Upper treshold"]).sum()),
|
||||||
|
Present_df_gtTHS_malim = pd.DataFrame(Present_df.resample('A').agg(agg)*100/(365*24*2))
|
||||||
|
Present_df_gtTHS_malim = pd.DataFrame(Present_df_gtTHS_malim.transpose().mean(axis=1))
|
||||||
|
Present_df_gtTHS_malim.columns = [str(int(row['# species'])) + '_0>' + 'Malim']
|
||||||
|
Present_df_gtTHS_malim.index = chainages
|
||||||
|
|
||||||
|
agg = ('>'+ str(row["Lower treshold"]) + '_count', lambda x: x.lt(row["Lower treshold"]).sum()),
|
||||||
|
Present_df_gtTHS_lolim = pd.DataFrame(Present_df.resample('A').agg(agg)*100/(365*24*2))
|
||||||
|
Present_df_gtTHS_lolim = pd.DataFrame(Present_df_gtTHS_lolim.transpose().mean(axis=1))
|
||||||
|
Present_df_gtTHS_lolim.columns = [str(int(row['# species'])) + '_0<' + 'LoLim']
|
||||||
|
Present_df_gtTHS_lolim.index = chainages
|
||||||
|
|
||||||
|
|
||||||
|
#future
|
||||||
|
Far_future_Sal_median_df = pd.DataFrame(Far_future_df.median())
|
||||||
|
Far_future_Sal_median_df.columns = ['med']
|
||||||
|
Far_future_df_95 = pd.DataFrame(Far_future_df.quantile(q=0.95, axis=0))
|
||||||
|
Far_future_df_05 = pd.DataFrame(Far_future_df.quantile(q=0.05, axis=0))
|
||||||
|
Far_future_stats = pd.concat([Far_future_df_05, Far_future_Sal_median_df, Far_future_df_95], axis=1, join='outer')
|
||||||
|
Far_future_stats.columns = ['9_' + str(s) for s in Far_future_stats.columns]
|
||||||
|
|
||||||
|
agg = ('>'+ str(row["Maximum optimal"]) + '_count', lambda x: x.gt(row["Maximum optimal"]).sum()),
|
||||||
|
Far_future_df_gtTHS = pd.DataFrame(Far_future_df.resample('A').agg(agg)*100/(365*24*2))
|
||||||
|
Far_future_df_gtTHS = pd.DataFrame(Far_future_df_gtTHS.transpose().mean(axis=1))
|
||||||
|
Far_future_df_gtTHS.columns = [str(int(row['# species'])) + '_9>' + 'MaOp']
|
||||||
|
Far_future_df_gtTHS.index = chainages
|
||||||
|
|
||||||
|
agg = ('>'+ str(row["Minimum optimal"]) + '_count', lambda x: x.lt(row["Minimum optimal"]).sum()),
|
||||||
|
Far_future_df_gtTHS_miop = pd.DataFrame(Far_future_df.resample('A').agg(agg)*100/(365*24*2))
|
||||||
|
Far_future_df_gtTHS_miop = pd.DataFrame(Far_future_df_gtTHS_miop.transpose().mean(axis=1))
|
||||||
|
Far_future_df_gtTHS_miop.columns = [str(int(row['# species'])) + '_9<' + 'MiOp']
|
||||||
|
Far_future_df_gtTHS_miop.index = chainages
|
||||||
|
|
||||||
|
agg = ('>'+ str(row["Upper treshold"]) + '_count', lambda x: x.gt(row["Upper treshold"]).sum()),
|
||||||
|
Far_future_df_gtTHS_malim = pd.DataFrame(Far_future_df.resample('A').agg(agg)*100/(365*24*2))
|
||||||
|
Far_future_df_gtTHS_malim = pd.DataFrame(Far_future_df_gtTHS_malim.transpose().mean(axis=1))
|
||||||
|
Far_future_df_gtTHS_malim.columns = [str(int(row['# species'])) + '_9>' + 'Malim']
|
||||||
|
Far_future_df_gtTHS_malim.index = chainages
|
||||||
|
|
||||||
|
agg = ('>'+ str(row["Lower treshold"]) + '_count', lambda x: x.lt(row["Lower treshold"]).sum()),
|
||||||
|
Far_future_df_gtTHS_lolim = pd.DataFrame(Far_future_df.resample('A').agg(agg)*100/(365*24*2))
|
||||||
|
Far_future_df_gtTHS_lolim = pd.DataFrame(Far_future_df_gtTHS_lolim.transpose().mean(axis=1))
|
||||||
|
Far_future_df_gtTHS_lolim.columns = [str(int(row['# species'])) + '_9<' + 'LoLim']
|
||||||
|
Far_future_df_gtTHS_lolim.index = chainages
|
||||||
|
|
||||||
|
|
||||||
|
#combine statistics into single df
|
||||||
|
Shapefile_df = pd.concat([Node_mesh, Present_stats, Present_df_gtTHS, Present_df_gtTHS_miop,
|
||||||
|
Present_df_gtTHS_malim, Present_df_gtTHS_lolim, Far_future_stats, Far_future_df_gtTHS,
|
||||||
|
Far_future_df_gtTHS_miop, Far_future_df_gtTHS_malim, Far_future_df_gtTHS_lolim], axis=1, join='outer')
|
||||||
|
|
||||||
|
|
||||||
|
Shapefile_df['Ch%_MaOp'] = Shapefile_df[str(int(row['# species'])) + '_9>' + 'MaOp'] - Shapefile_df[str(int(row['# species'])) + '_0>' + 'MaOp']
|
||||||
|
Shapefile_df['Ch%_MiOp'] = Shapefile_df[str(int(row['# species'])) + '_9<' + 'MiOp'] - Shapefile_df[str(int(row['# species'])) + '_0<' + 'MiOp']
|
||||||
|
Shapefile_df['Ch%_Malim'] = Shapefile_df[str(int(row['# species'])) + '_9>' + 'Malim'] - Shapefile_df[str(int(row['# species'])) + '_0>' + 'Malim']
|
||||||
|
Shapefile_df['Ch%_LoLim'] = Shapefile_df[str(int(row['# species'])) + '_9<' + 'LoLim'] - Shapefile_df[str(int(row['# species'])) + '_0<' + 'LoLim']
|
||||||
|
|
||||||
|
#Shapefile_df.columns
|
||||||
|
#Combined_df_gtTHS.columns = [s + '_gtTHS' for s in scenario_real_names]
|
||||||
|
|
||||||
|
#Combined_df_gtTHS.plot(ylim=[0,500])
|
||||||
|
Shape_out_path = output_directory + 'Hunter_salinity_stats_V3.shp'
|
||||||
|
Shapefile_df.to_file(Shape_out_path, driver='ESRI Shapefile')
|
||||||
|
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#Plot salinityanalysis
|
||||||
|
#==========================================================#
|
||||||
|
png_out_name = output_directory + variable + 'sea level rise analysis_' + Plot_scenario + '.pdf'
|
||||||
|
fig = plt.figure(figsize=(40,20))
|
||||||
|
ax=plt.subplot(1,3,1)
|
||||||
|
plt.title('median '+ variable + ' present day')
|
||||||
|
Shapefile_df.plot(cmap='viridis_r', column='present median' , legend=True,ax=ax)
|
||||||
|
#lgd = ax.legend(loc='center left', bbox_to_anchor=(1, 0.5))
|
||||||
|
ax.legend()
|
||||||
|
ax=plt.subplot(1,3,2)
|
||||||
|
plt.title('Change in median of '+ variable + ' under 0.9m SLR')
|
||||||
|
Shapefile_df.plot(cmap='viridis_r', column='Dif in median' , legend=True,ax=ax)
|
||||||
|
#lgd = ax.legend(loc='center left', bbox_to_anchor=(1, 0.5))
|
||||||
|
ax.legend()
|
||||||
|
#plot tides
|
||||||
|
ax=plt.subplot(1,3,3)
|
||||||
|
plt.title('Change in time where '+ variable + ' > '+ str(Threshold) + ' under 0.9m SLR')
|
||||||
|
#max_min_extime_elev.plot(cmap='viridis_r', column='HigT Elev 0SLR' , legend=True, vmin=ylims[0], vmax=ylims[1],ax=ax)
|
||||||
|
Shapefile_df.plot(cmap='viridis_r', column='Dif in % time > threshold' , legend=True,ax=ax)
|
||||||
|
ax.legend()
|
||||||
|
ax.legend()
|
||||||
|
fig.tight_layout()
|
||||||
|
fig.savefig(png_out_name)
|
||||||
|
plt.close()
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -0,0 +1,92 @@
|
|||||||
|
# -*- coding: utf-8 -*-
|
||||||
|
"""
|
||||||
|
Created on Tue Apr 23 17:09:03 2019
|
||||||
|
|
||||||
|
@author: z5025317
|
||||||
|
"""
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#Load packages
|
||||||
|
#==========================================================#
|
||||||
|
import geopandas as gpd
|
||||||
|
import numpy as np
|
||||||
|
import os
|
||||||
|
import pandas as pd
|
||||||
|
import glob
|
||||||
|
import matplotlib
|
||||||
|
import matplotlib.pyplot as plt
|
||||||
|
from datetime import datetime
|
||||||
|
from datetime import timedelta
|
||||||
|
from matplotlib.backends.backend_pdf import PdfPages
|
||||||
|
from ggplot import *
|
||||||
|
|
||||||
|
#name of scenario
|
||||||
|
Plot_scenario = 'HD_grid_V1'
|
||||||
|
ylims = [0,40]
|
||||||
|
variable = 'salinity'
|
||||||
|
|
||||||
|
#set directory path for output files
|
||||||
|
output_directory = 'H:/WRL_Projects/Hunter_CC_Modeling/Module_6/03_Results/Output/Postprocessed/' + Plot_scenario + '/Figures/'
|
||||||
|
if not os.path.exists(output_directory):
|
||||||
|
os.makedirs(output_directory)
|
||||||
|
|
||||||
|
#input csv with species and their salinity optima and thresholds
|
||||||
|
salinity_eco_csv = "H:/WRL_Projects/Hunter_CC_Modeling/Module_6/03_Results/Eco_thresholds/Salintiy_Hunter_physiology_V1.csv"
|
||||||
|
salinity_eco_df = pd.read_csv(salinity_eco_csv, index_col=2)
|
||||||
|
salinity_eco_df = salinity_eco_df[salinity_eco_df.index.notnull()]
|
||||||
|
|
||||||
|
#load and refine node vs mesh shapefile to store the results of the statistics
|
||||||
|
test = gpd.read_file('H:/WRL_Projects/Hunter_CC_Modeling/Module_6/03_Results/GIS_output/Hunter_Saltmarsh_salinity_stats_V2_clipped_estuary.shp')
|
||||||
|
tost = test.copy()
|
||||||
|
tost= tost.to_crs({'init': 'epsg:3857'})
|
||||||
|
print tost.crs
|
||||||
|
tost.head(2)
|
||||||
|
|
||||||
|
#Now the area in square kilometers
|
||||||
|
tost["area"] = tost['geometry'].area/ 10**6
|
||||||
|
|
||||||
|
#calculate areas of salinity intervals at 10th of the total range
|
||||||
|
|
||||||
|
Area_df = {}
|
||||||
|
Area_f_df = {}
|
||||||
|
incl_bool=False
|
||||||
|
Nr_of_intervs = 100
|
||||||
|
for i in range(1,Nr_of_intervs+1,1):
|
||||||
|
Interval = ((tost['0_med'].max() - tost['0_med'].min())/Nr_of_intervs)
|
||||||
|
if i == 1:
|
||||||
|
Area_df[round(Interval*i - Interval/2 ,2)] = round(tost[tost['0_med'].between(0,Interval, inclusive=incl_bool)]['area'].sum(),2)
|
||||||
|
Area_f_df[round(Interval*i - Interval/2 ,2)] = round(tost[tost['9_med'].between(0,Interval, inclusive=incl_bool)]['area'].sum(),2)
|
||||||
|
else:
|
||||||
|
Area_df[round(Interval*i - Interval/2 ,2)] = round(tost[tost['0_med'].between(Interval*(i-1), i*Interval, inclusive=incl_bool)]['area'].sum(),2)
|
||||||
|
Area_f_df[round(Interval*i - Interval/2 ,2)] = round(tost[tost['9_med'].between(Interval*(i-1), i*Interval, inclusive=incl_bool)]['area'].sum(),2)
|
||||||
|
|
||||||
|
Area_df = pd.DataFrame.from_dict(Area_df, orient='index')
|
||||||
|
Area_df.columns = ['0_med']
|
||||||
|
|
||||||
|
Area_f_df2 = pd.DataFrame.from_dict(Area_f_df, orient='index')
|
||||||
|
Area_f_df2.columns = ['0.9_med']
|
||||||
|
|
||||||
|
SLR_stats = pd.concat([Area_df, Area_f_df2], axis=1, join='outer')
|
||||||
|
SLR_stats = SLR_stats.sort_index(axis=0, level=None, ascending=True)
|
||||||
|
|
||||||
|
SLR_stats.plot()
|
||||||
|
|
||||||
|
|
||||||
|
png_out_name = output_directory +'/' + variable + '_salinity_habitat_analysis_' + Plot_scenario + '.pdf'
|
||||||
|
fig = plt.figure(figsize=(15,8))
|
||||||
|
ax=plt.subplot(1,1,1)
|
||||||
|
plt.title('Salinity range habitat size for Hunter River 0 and 0.9m sea level rise')
|
||||||
|
SLR_stats.plot( legend=False, ax=ax)
|
||||||
|
plt.ylabel("Area [square km]")
|
||||||
|
plt.xlabel("Salinity [PSU]")
|
||||||
|
fig.tight_layout()
|
||||||
|
fig.savefig(png_out_name)
|
||||||
|
plt.close()
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -0,0 +1,445 @@
|
|||||||
|
# -*- coding: utf-8 -*-
|
||||||
|
#==========================================================#
|
||||||
|
#Last Updated - June 2018
|
||||||
|
#@author: z5025317 Valentin Heimhuber
|
||||||
|
#code for creating climate prioritization plots for NARCLIM variables.
|
||||||
|
#Inputs: Uses CSV files that contain all 12 NARCLIM model runs time series for 1 grid cell created with: P1_NARCliM_NC_to_CSV_CCRC_SS.py
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#Load packages
|
||||||
|
#==========================================================#
|
||||||
|
import geopandas as gpd
|
||||||
|
import numpy as np
|
||||||
|
import os
|
||||||
|
import pandas as pd
|
||||||
|
import glob
|
||||||
|
import matplotlib
|
||||||
|
import matplotlib.pyplot as plt
|
||||||
|
from datetime import datetime
|
||||||
|
from datetime import timedelta
|
||||||
|
from matplotlib.backends.backend_pdf import PdfPages
|
||||||
|
from ggplot import *
|
||||||
|
matplotlib.style.use('ggplot')
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#Input parameters
|
||||||
|
#==========================================================#
|
||||||
|
#set scenario codes and beginning and end years and corresponding scenario code
|
||||||
|
fs=['Hwq003', 'Hwq005']
|
||||||
|
scenario_real_names = ['Present', 'Far_Future']
|
||||||
|
HDvariables = ['depth', 'elev']
|
||||||
|
variable = 'elev' #depth or vel
|
||||||
|
|
||||||
|
#Save bathyfile?
|
||||||
|
save_bathyfile = False
|
||||||
|
|
||||||
|
#set max rows to be read in from the RMA2 csv files
|
||||||
|
maxrowsincsv = 15000
|
||||||
|
|
||||||
|
#name of scenario
|
||||||
|
Plot_scenario = 'HD_grid_V1'
|
||||||
|
ylims = [-1.1,8]
|
||||||
|
|
||||||
|
#time frames for analysis
|
||||||
|
startdate = '1999 01 01'
|
||||||
|
enddate = '1999 12 01'
|
||||||
|
tideanalysis_day = '1999 04 26'
|
||||||
|
#year=range(startyear, endyear+1)
|
||||||
|
|
||||||
|
#load and refine node vs mesh shapefile to store the results of the statistics
|
||||||
|
Node_mesh = gpd.read_file('H:/WRL_Projects/Hunter_CC_Modeling/Module_6/03_Results/GIS_data/Mesh_Node_GIS_Setup/hcc002_fishnet_500m_V3_joinXY.shp')
|
||||||
|
Node_mesh.index = Node_mesh['Field1']
|
||||||
|
Node_mesh = Node_mesh.iloc[:,-4:]
|
||||||
|
Node_mesh.columns = ['Node', 'X', 'Y', 'geometry']
|
||||||
|
node = Node_mesh['Node'].values
|
||||||
|
chainages = node
|
||||||
|
|
||||||
|
#load actual mesh file
|
||||||
|
Actual_mesh = gpd.read_file('H:/WRL_Projects/Hunter_CC_Modeling/Module_6/03_Results/GIS_data/Mesh_Node_GIS_Setup/hcc002.shp')
|
||||||
|
|
||||||
|
#set directory path for output files
|
||||||
|
output_directory = 'H:/WRL_Projects/Hunter_CC_Modeling/Module_6/03_Results/Output/Postprocessed/' + Plot_scenario + '/Figures'
|
||||||
|
|
||||||
|
#set input directories and data
|
||||||
|
#tidal boundary data
|
||||||
|
tides_csv='C:/Users/z5025317/OneDrive - UNSW/Hunter_CC_Modeling/07_Modelling/01_Input/Tide Generator/Tidal Simulation Python Script (BMM)/Tides_1990_2010.csv'
|
||||||
|
#CSV file of mesh nodes and corresponding chainages
|
||||||
|
nodes_csv = 'H:/WRL_Projects/Hunter_CC_Modeling/Module_6/03_Results/Chainages/Hunter_nodes.csv'
|
||||||
|
#River flow boundary
|
||||||
|
Flow_csv = 'H:/WRL_Projects/Hunter_CC_Modeling/Module_6/01_Input/BCGeneration/Scenarios/Calibration/Calibration_Greta.csv'
|
||||||
|
#==========================================================#
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#set plot parameters
|
||||||
|
ALPHA_figs = 1
|
||||||
|
font = {'family' : 'sans-serif',
|
||||||
|
'weight' : 'normal',
|
||||||
|
'size' : 14}
|
||||||
|
matplotlib.rc('font', **font)
|
||||||
|
#==========================================================#
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#output_directory = 'J:/Project wrl2016032/NARCLIM_Raw_Data/Extracted'
|
||||||
|
if not os.path.exists(output_directory):
|
||||||
|
os.makedirs(output_directory)
|
||||||
|
print("output directory folder didn't exist and was generated")
|
||||||
|
#==========================================================#
|
||||||
|
|
||||||
|
|
||||||
|
#========================================================#
|
||||||
|
#automated part of the code doing the data extraction
|
||||||
|
#==========================================================
|
||||||
|
|
||||||
|
#Load boundary flow data
|
||||||
|
Flow_df = pd.read_csv(Flow_csv, parse_dates=True, dayfirst=True, index_col=0)['Q[ML/d]']
|
||||||
|
Flow_df.columns = ['Q[ML/d]']
|
||||||
|
Flow_df = Flow_df[datetime.strptime(startdate , '%Y %m %d').date():datetime.strptime(enddate, '%Y %m %d').date()]
|
||||||
|
Flow_df.plot()
|
||||||
|
#Load tide boundary data
|
||||||
|
tides_dfm = pd.read_csv(tides_csv, parse_dates=True, index_col=0)
|
||||||
|
tides_dfm.columns = ['tide']
|
||||||
|
|
||||||
|
#read csv file with extracted RMA data
|
||||||
|
#RMA_df = pd.read_csv(RMA_data_csv, parse_dates=True, index_col=0)
|
||||||
|
|
||||||
|
#load RMA2 data
|
||||||
|
HD_Summary_df = pd.DataFrame()
|
||||||
|
for variable in HDvariables:
|
||||||
|
Summary_df = pd.DataFrame()
|
||||||
|
df = pd.DataFrame()
|
||||||
|
for f in fs:
|
||||||
|
#set input and output directories
|
||||||
|
input_directory = 'H:/WRL_Projects/Hunter_CC_Modeling/Module_6/03_Results/Output/' + f
|
||||||
|
# Set working direcotry (where postprocessed NARClIM data is located)
|
||||||
|
os.chdir(input_directory)
|
||||||
|
#==========================================================#
|
||||||
|
#Load data file
|
||||||
|
if variable == 'depth' or variable == 'elev':
|
||||||
|
Clim_Var_CSVs = glob.glob('*' + variable + '*')
|
||||||
|
clim_var_csv_path = Clim_Var_CSVs[0]
|
||||||
|
df = pd.read_csv(clim_var_csv_path, index_col=False, sep=' ', nrows= maxrowsincsv)
|
||||||
|
df.index = pd.to_datetime(df.Year, format = '%Y') + pd.to_timedelta(df.Hour, unit='h')
|
||||||
|
df= df.drop(columns=['Year', 'Hour'])
|
||||||
|
a=len(df.columns)-1
|
||||||
|
df=df.iloc[:,:a]
|
||||||
|
if variable == 'vel':
|
||||||
|
#x velocity
|
||||||
|
Clim_Var_CSVs = glob.glob('*' +'x'+ variable + '*')
|
||||||
|
clim_var_csv_path = Clim_Var_CSVs[0]
|
||||||
|
df = pd.read_csv(clim_var_csv_path, index_col=False, sep=' ', nrows= maxrowsincsv)
|
||||||
|
df.index = pd.to_datetime(df.Year, format = '%Y') + pd.to_timedelta(df.Hour, unit='h')
|
||||||
|
dfx= df.drop(columns=['Year', 'Hour','1'])
|
||||||
|
#y velocity
|
||||||
|
Clim_Var_CSVs = glob.glob('*' +'y'+ variable + '*')
|
||||||
|
clim_var_csv_path = Clim_Var_CSVs[0]
|
||||||
|
df = pd.read_csv(clim_var_csv_path, index_col=False, sep=' ',nrows= maxrowsincsv)
|
||||||
|
df.index = pd.to_datetime(df.Year, format = '%Y') + pd.to_timedelta(df.Hour, unit='h')
|
||||||
|
dfy= df.drop(columns=['Year', 'Hour','1'])
|
||||||
|
df = np.sqrt(dfx*dfx + dfy*dfy)
|
||||||
|
df.columns = df.columns + '_'+ f + '_'+ variable
|
||||||
|
#cut down the df to start and end date
|
||||||
|
df = df[datetime.strptime(startdate , '%Y %m %d').date():datetime.strptime(enddate, '%Y %m %d').date()]
|
||||||
|
Summary_df = pd.concat([Summary_df, df], axis=1, join='outer')
|
||||||
|
HD_Summary_df = pd.concat([HD_Summary_df , Summary_df], axis=1, join='outer')
|
||||||
|
|
||||||
|
|
||||||
|
#Summary_df.columns = chainages
|
||||||
|
|
||||||
|
|
||||||
|
#subset the input data frame
|
||||||
|
Present_df = HD_Summary_df.filter(regex='Hwq003').filter(regex='elev')
|
||||||
|
Far_future_df = HD_Summary_df.filter(regex='Hwq005').filter(regex='elev')
|
||||||
|
|
||||||
|
#Create Bathymetry along the nodes and chainage
|
||||||
|
|
||||||
|
Elev_df = HD_Summary_df.filter(regex='Hwq003').filter(regex='elev')
|
||||||
|
Elev_df.columns = node
|
||||||
|
Depth_df = HD_Summary_df.filter(regex='Hwq003').filter(regex='depth')
|
||||||
|
Depth_df.columns = node
|
||||||
|
Bathy_df = pd.DataFrame(Elev_df.loc[Elev_df.index[0]] - Depth_df.loc[Elev_df.index[0]])
|
||||||
|
Bathy_df.columns = ['Bathymetry']
|
||||||
|
if save_bathyfile:
|
||||||
|
bathy_out_path = output_directory + 'Hunter_nodes_bathy.shp'
|
||||||
|
Node_mesh_df.to_file(bathy_out_path, driver='ESRI Shapefile')
|
||||||
|
|
||||||
|
|
||||||
|
#plot bathy
|
||||||
|
Node_mesh_df = pd.concat([Node_mesh , Bathy_df], axis=1, join='outer')
|
||||||
|
png_out_name = output_directory + 'bathy.pdf'
|
||||||
|
#plot figure
|
||||||
|
fig = plt.figure(figsize=(12,17))
|
||||||
|
ax=plt.subplot(1,1,1)
|
||||||
|
Node_mesh_df.plot(column='Bathymetry',
|
||||||
|
legend=True,
|
||||||
|
cmap='viridis',
|
||||||
|
ax=ax,
|
||||||
|
vmin=-20, vmax=0);
|
||||||
|
Actual_mesh.plot(ax=ax, alpha=1, edgecolor='grey',facecolor="None")
|
||||||
|
plt.title('Bathymetry of the Hunter River estuary')
|
||||||
|
ax.legend()
|
||||||
|
fig.tight_layout()
|
||||||
|
fig.savefig(png_out_name)
|
||||||
|
plt.close()
|
||||||
|
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#Tidal analysis
|
||||||
|
#==========================================================#
|
||||||
|
#read in tide data
|
||||||
|
tides_df = tides_dfm[datetime.strptime(tideanalysis_day , '%Y %m %d').date()- timedelta(days=2) : datetime.strptime(tideanalysis_day , '%Y %m %d').date() + timedelta(days=3) ]
|
||||||
|
central_tides_df = tides_dfm[datetime.strptime(tideanalysis_day , '%Y %m %d').date():datetime.strptime(tideanalysis_day , '%Y %m %d').date()+ timedelta(days=1) ]
|
||||||
|
maxtide_index = central_tides_df['tide'].idxmax()
|
||||||
|
end_maxtide_index = maxtide_index + timedelta(days=0.4)
|
||||||
|
beg_maxtide_index = maxtide_index - timedelta(days=0.2)
|
||||||
|
short_tides_df = tides_df[beg_maxtide_index: end_maxtide_index]
|
||||||
|
short_tides_df.plot(cmap='viridis', legend=True)
|
||||||
|
mintide_index = short_tides_df['tide'].idxmin()
|
||||||
|
|
||||||
|
#plot the minimum and maximum elevation along the estuary occuring within a single tidal cycle
|
||||||
|
Short_tide_elev_df = HD_Summary_df.filter(regex='elev')[min(short_tides_df.index):max(short_tides_df.index)]
|
||||||
|
max_min_1cycle_elev_0slr = pd.concat([Short_tide_elev_df.filter(regex=fs[0]).max(), Short_tide_elev_df.filter(regex=fs[0]).min()], axis=1, join='inner')
|
||||||
|
max_min_1cycle_elev_09slr = pd.concat([Short_tide_elev_df.filter(regex=fs[1]).max(), Short_tide_elev_df.filter(regex=fs[1]).min()], axis=1, join='inner')
|
||||||
|
max_min_1cycle_elev_0slr.index = chainages
|
||||||
|
max_min_1cycle_elev_09slr.index = chainages
|
||||||
|
max_min_1cycle_elev = pd.concat([max_min_1cycle_elev_0slr, max_min_1cycle_elev_09slr], axis=1, join='outer')
|
||||||
|
max_min_1cycle_elev.columns = ['MaxElev 0 SLR','MinElev 0 SLR','MaxElev 0.9 SLR','MinElev 0.9 SLR' ]
|
||||||
|
max_min_1cycle_elev = pd.concat([Node_mesh , max_min_1cycle_elev], axis=1, join='outer')
|
||||||
|
#max_min_1cycle_elev.plot(cmap='viridis_r', column='MaxElev 0.9 SLR' , legend=True, vmin=-1, vmax=2)
|
||||||
|
|
||||||
|
|
||||||
|
#plot the elevation along the estuary at exactly the time of high and low tide
|
||||||
|
max_min_extime_elev_0slr = pd.concat([HD_Summary_df.filter(regex=fs[0]).filter(regex='elev').loc[maxtide_index], Summary_df.filter(regex=fs[0]).loc[mintide_index]], axis=1, join='outer')
|
||||||
|
max_min_extime_elev_09slr = pd.concat([HD_Summary_df.filter(regex=fs[1]).filter(regex='elev').loc[maxtide_index], Summary_df.filter(regex=fs[1]).loc[mintide_index]], axis=1, join='outer')
|
||||||
|
max_min_extime_elev_0slr.index = chainages
|
||||||
|
max_min_extime_elev_09slr.index = chainages
|
||||||
|
max_min_extime_elev = pd.concat([max_min_extime_elev_0slr, max_min_extime_elev_09slr], axis=1, join='outer')
|
||||||
|
max_min_extime_elev.columns = ['HigT Elev 0SLR','LowT Elev 0SLR','HigT Elev 0.9 SLR','LowT Elev 0.9 SLR' ]
|
||||||
|
max_min_extime_elev = pd.concat([Node_mesh , max_min_extime_elev], axis=1, join='outer')
|
||||||
|
#max_min_extime_elev.plot(cmap='viridis_r', column='HigT Elev 0.9 SLR' , legend=True, vmin=-1, vmax=2)
|
||||||
|
#==========================================================#
|
||||||
|
#End of Tidal analysis
|
||||||
|
#==========================================================#
|
||||||
|
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#Plot Tidal analysis
|
||||||
|
#==========================================================#
|
||||||
|
ylims = [-0.6, 1]
|
||||||
|
png_out_name = output_directory + variable + '_high_low_tide_analysis_' + Plot_scenario + '.pdf'
|
||||||
|
fig = plt.figure(figsize=(23,20))
|
||||||
|
ax=plt.subplot(2,2,1)
|
||||||
|
plt.title('High tide water surface elevation along the estuary')
|
||||||
|
#max_min_extime_elev.plot(cmap='viridis_r', column='HigT Elev 0SLR' , legend=True, vmin=ylims[0], vmax=ylims[1],ax=ax)
|
||||||
|
max_min_extime_elev.plot(cmap='viridis_r', column='HigT Elev 0SLR' , legend=True,ax=ax)
|
||||||
|
#lgd = ax.legend(loc='center left', bbox_to_anchor=(1, 0.5))
|
||||||
|
ax.legend()
|
||||||
|
#plot tides
|
||||||
|
ax=plt.subplot(2,2,2)
|
||||||
|
plt.title('Low tide water surface elevation along the estuary')
|
||||||
|
max_min_extime_elev.plot(cmap='viridis_r', column='LowT Elev 0SLR' , legend=True,ax=ax)
|
||||||
|
#lgd = ax.legend(loc='center left', bbox_to_anchor=(1, 0.5))
|
||||||
|
ax.legend()
|
||||||
|
#plot tides
|
||||||
|
ax=plt.subplot(2,1,2)
|
||||||
|
plt.ylim(ylims)
|
||||||
|
plt.title('Tide at open ocean boundary')
|
||||||
|
short_tides_df.plot(cmap='viridis', legend=False, ax=ax)
|
||||||
|
ax.axvline(maxtide_index, color='black', linestyle='--')
|
||||||
|
ax.axvline(mintide_index, color='black', linestyle='-')
|
||||||
|
plt.xlabel("Time")
|
||||||
|
plt.ylabel("Water level [m AHD]")
|
||||||
|
#lgd = ax.legend(loc='center left', bbox_to_anchor=(1, 0.5))
|
||||||
|
ax.legend()
|
||||||
|
fig.tight_layout()
|
||||||
|
fig.savefig(png_out_name)
|
||||||
|
plt.close()
|
||||||
|
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#animate 2 tidal cycles baseline scenario:
|
||||||
|
#==========================================================#
|
||||||
|
Six_day_tide_elev_df = HD_Summary_df.filter(regex=fs[0]).filter(regex='elev')[maxtide_index - timedelta(days=2): maxtide_index + timedelta(days=2)]
|
||||||
|
Six_day_tide_elev_df.columns = chainages
|
||||||
|
Six_day_tides_df = tides_df[maxtide_index - timedelta(days=2): maxtide_index + timedelta(days=2)]
|
||||||
|
Six_day_tides_df.plot(cmap='viridis', legend=True)
|
||||||
|
|
||||||
|
Six_day_flow_df = Flow_df[maxtide_index - timedelta(days=2): maxtide_index + timedelta(days=2)]
|
||||||
|
Six_day_flow_df = pd.concat([Six_day_tides_df, Six_day_flow_df], axis=1, join='outer')['Q[ML/d]'].interpolate()
|
||||||
|
Six_day_flow_df.plot(cmap='viridis', legend=True)
|
||||||
|
|
||||||
|
ylims = [-0.6, 1]
|
||||||
|
ii=0
|
||||||
|
for index in Six_day_tide_elev_df.index[0::4]:
|
||||||
|
ii=ii+1
|
||||||
|
#index = Six_day_tide_elev_df.index[1]
|
||||||
|
png_out_path = output_directory + '/TidalCycle_' + variable + '_' + Plot_scenario + '/'
|
||||||
|
if not os.path.exists(png_out_path):
|
||||||
|
os.makedirs(png_out_path)
|
||||||
|
#png_out_name = png_out_path + str(index) + 'longitudinalXS.png'
|
||||||
|
png_out_name = png_out_path + str(ii) + variable + '_longitudinalXS.png'
|
||||||
|
|
||||||
|
fig = plt.figure(figsize=(17,20))
|
||||||
|
ax=plt.subplot(2,1,1)
|
||||||
|
plt.title('Water surface elevation along the estuary')
|
||||||
|
df1 = pd.DataFrame(Six_day_tide_elev_df.loc[index])
|
||||||
|
df1.columns = ['Instant']
|
||||||
|
Six_day_tide_elev_df_instant = pd.concat([Node_mesh , df1], axis=1, join='outer')
|
||||||
|
Six_day_tide_elev_df_instant.columns
|
||||||
|
Six_day_tide_elev_df_instant.plot(cmap='viridis_r', column='Instant' ,vmin=ylims[0], vmax=ylims[1], legend=True,ax=ax)
|
||||||
|
#plot tides
|
||||||
|
ax=plt.subplot(2,1,2)
|
||||||
|
plt.ylim(ylims)
|
||||||
|
plt.title('Tide at open ocean boundary')
|
||||||
|
Six_day_tides_df.plot(cmap='viridis', legend=False, ax=ax)
|
||||||
|
ax.axvline(index, color='green', linestyle='--')
|
||||||
|
plt.xlabel("Time")
|
||||||
|
plt.ylabel("Water level [m AHD]")
|
||||||
|
|
||||||
|
fig.tight_layout()
|
||||||
|
fig.savefig(png_out_name)
|
||||||
|
plt.close()
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#animate 2 tidal cycles baseline + SLR scenario:
|
||||||
|
#==========================================================#
|
||||||
|
Six_day_tide_elev_df_0slr = HD_Summary_df.filter(regex=fs[0]).filter(regex='elev')[maxtide_index - timedelta(days=1): maxtide_index + timedelta(days=1)]
|
||||||
|
Six_day_tide_elev_df_0slr.columns = chainages
|
||||||
|
Six_day_tide_elev_df_09slr = HD_Summary_df.filter(regex=fs[1]).filter(regex='elev')[maxtide_index - timedelta(days=1): maxtide_index + timedelta(days=1)]
|
||||||
|
Six_day_tide_elev_df_09slr.columns = chainages
|
||||||
|
Six_day_tides_df = tides_df[maxtide_index - timedelta(days=1): maxtide_index + timedelta(days=1.5)]
|
||||||
|
Six_day_tides_df.plot(cmap='viridis', legend=True)
|
||||||
|
|
||||||
|
ii=0
|
||||||
|
for index in Six_day_tide_elev_df_0slr.index:
|
||||||
|
ii=ii+1
|
||||||
|
#index = Six_day_tide_elev_df_0slr.index[1]
|
||||||
|
png_out_path = output_directory + '/' + Plot_scenario + '/TidalCycle_SLR_' + variable + '_' + Plot_scenario + '/'
|
||||||
|
if not os.path.exists(png_out_path):
|
||||||
|
os.makedirs(png_out_path)
|
||||||
|
|
||||||
|
#png_out_name = png_out_path + str(index) + 'longitudinalXS.png'
|
||||||
|
png_out_name = png_out_path + str(ii) + variable + '_longitudinalXS.png'
|
||||||
|
max_min_extime_elev_both = pd.concat([Six_day_tide_elev_df_0slr.loc[index], Six_day_tide_elev_df_09slr.loc[index]], axis=1, join='outer')
|
||||||
|
max_min_extime_elev_both.columns = ['Present Day','0.9m SLR']
|
||||||
|
|
||||||
|
fig = plt.figure(figsize=(17,12))
|
||||||
|
ax=plt.subplot(2,1,1)
|
||||||
|
plt.ylim(ylims)
|
||||||
|
plt.title('Water surface elevation along the estuary')
|
||||||
|
ax.set_prop_cycle(color=['slateblue','tomato'], linestyle=['-', '-'], lw=[2,2])
|
||||||
|
max_min_extime_elev_both.plot(ax=ax)
|
||||||
|
ax.legend(loc=1)
|
||||||
|
plt.axhline(y=0, color='r', linestyle='--', lw=1, alpha=0.5)
|
||||||
|
plt.ylim(-1.1,2.5)
|
||||||
|
plt.ylabel("Water level [m AHD]")
|
||||||
|
plt.xlabel("Distance from ocean boundary [km]")
|
||||||
|
|
||||||
|
#plot tides
|
||||||
|
ax=plt.subplot(2,1,2)
|
||||||
|
plt.ylim(-1.1,1.5)
|
||||||
|
plt.title('Tide at open ocean boundary')
|
||||||
|
Six_day_tides_df.plot(cmap='viridis', legend=False, ax=ax)
|
||||||
|
ax.axvline(index, color='green', linestyle='--')
|
||||||
|
plt.xlabel("Time")
|
||||||
|
plt.ylabel("Water level [m AHD]")
|
||||||
|
fig.tight_layout()
|
||||||
|
fig.savefig(png_out_name)
|
||||||
|
plt.close()
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
#for NODE in node:
|
||||||
|
# NODE = str(NODE)
|
||||||
|
# #=========#
|
||||||
|
# #comparison time series plot at node
|
||||||
|
# #=========#
|
||||||
|
# #out name
|
||||||
|
# png_out_file_name = comparison_code + '_' + variable + '_' + NODE + '_time_series.png'
|
||||||
|
# png_out_path = png_output_directory + '/' + png_out_file_name
|
||||||
|
# #
|
||||||
|
# plotin_df = Summary_df.filter(regex=NODE)
|
||||||
|
# #prepare data frame for plot
|
||||||
|
# fig = plt.figure(figsize=(14,18))
|
||||||
|
# ax=plt.subplot(4,1,1)
|
||||||
|
# #start and end dat of plots
|
||||||
|
# plt.title(variable + '_' + NODE + ' - time series')
|
||||||
|
# start_date = datetime(int('1996'), int('02'), int('01'))
|
||||||
|
# end_date = datetime(int('1996'), int('02'), int('5'))
|
||||||
|
# plotin_df1=plotin_df[start_date:end_date]
|
||||||
|
# ymin = min(plotin_df1.min()) - 0.01 *min(plotin_df1.min())
|
||||||
|
# ymax = max(plotin_df1.max()) + 0.01 *max(plotin_df1.max())
|
||||||
|
# plotin_df1.plot(ylim=(ymin,ymax) ,legend=False, ax=ax)
|
||||||
|
# #plt.legend( loc=1)
|
||||||
|
# plt.xticks([])
|
||||||
|
#
|
||||||
|
# ax=plt.subplot(4,1,2)
|
||||||
|
# start_date = datetime(int('1996'), int('02'), int('01'))
|
||||||
|
# end_date = datetime(int('1996'), int('02'), int('3'))
|
||||||
|
# plotin_df2=plotin_df[start_date:end_date]
|
||||||
|
# ymin = min(plotin_df2.min()) - 0.1 *min(plotin_df2.min())
|
||||||
|
# ymax = max(plotin_df2.max()) + 0.1 *max(plotin_df2.max())
|
||||||
|
# plotin_df2.plot(ylim=(ymin,ymax),legend=False, ax=ax)
|
||||||
|
# #plt.legend( loc=1)
|
||||||
|
# ax.xaxis.grid(False)
|
||||||
|
#
|
||||||
|
# ax=plt.subplot(4,1,3)
|
||||||
|
# plt.title(variable + '_' + NODE + ' - monthly maximum')
|
||||||
|
# Monthly_max = plotin_df.resample('M').max()
|
||||||
|
# Monthly_max.plot(ax=ax,legend=False)
|
||||||
|
# plt.legend( loc=1)
|
||||||
|
# ax.xaxis.grid(False)
|
||||||
|
#
|
||||||
|
# ax=plt.subplot(4,1,4)
|
||||||
|
# plt.title(variable + '_' + NODE + ' - monthly mean')
|
||||||
|
# Monthly_mean = plotin_df.resample('M').mean()
|
||||||
|
# Monthly_mean.plot(ax=ax)
|
||||||
|
# #plt.legend(bbox_to_anchor=(0., 1.02, 1., .102), loc=3,
|
||||||
|
# # ncol=2, mode="expand", borderaxespad=0.)
|
||||||
|
# #plt.legend( loc=1)
|
||||||
|
# ax.xaxis.grid(False)
|
||||||
|
#
|
||||||
|
# #ax.patch.set_alpha(ALPHA_figs)
|
||||||
|
# fig.patch.set_alpha(ALPHA_figs)
|
||||||
|
# fig.tight_layout()
|
||||||
|
# fig.savefig(png_out_path)
|
||||||
|
# plt.close()
|
||||||
|
# #=========#
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -0,0 +1,425 @@
|
|||||||
|
# -*- coding: utf-8 -*-
|
||||||
|
#==========================================================#
|
||||||
|
#Last Updated - June 2018
|
||||||
|
#@author: z5025317 Valentin Heimhuber
|
||||||
|
#code for creating climate prioritization plots for NARCLIM variables.
|
||||||
|
#Inputs: Uses CSV files that contain all 12 NARCLIM model runs time series for 1 grid cell created with: P1_NARCliM_NC_to_CSV_CCRC_SS.py
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#Load packages
|
||||||
|
#==========================================================#
|
||||||
|
import numpy as np
|
||||||
|
import os
|
||||||
|
import pandas as pd
|
||||||
|
import glob
|
||||||
|
import matplotlib
|
||||||
|
import matplotlib.pyplot as plt
|
||||||
|
from datetime import datetime
|
||||||
|
from datetime import timedelta
|
||||||
|
from matplotlib.backends.backend_pdf import PdfPages
|
||||||
|
from ggplot import *
|
||||||
|
matplotlib.style.use('ggplot')
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#Input parameters
|
||||||
|
#==========================================================#
|
||||||
|
#set scenario codes and beginning and end years and corresponding scenario code
|
||||||
|
fs=['Hwq003', 'Hwq005']
|
||||||
|
scenario_real_names = ['Present', 'Far_Future']
|
||||||
|
HDvariables = ['depth', 'elev']
|
||||||
|
variable = 'elev' #depth or vel
|
||||||
|
|
||||||
|
maxrowsincsv = 15000
|
||||||
|
|
||||||
|
#name of scenario
|
||||||
|
Plot_scenario = 'Flood2'
|
||||||
|
ylims = [-1.1,8]
|
||||||
|
|
||||||
|
#time frames for analysis
|
||||||
|
startdate = '2000 01 01'
|
||||||
|
enddate = '2000 12 01'
|
||||||
|
tideanalysis_day = '1999 01 26'
|
||||||
|
#year=range(startyear, endyear+1)
|
||||||
|
|
||||||
|
#set directory path for output files
|
||||||
|
output_directory = 'H:/WRL_Projects/Hunter_CC_Modeling/Module_6/03_Results/Output/Postprocessed/Figures'
|
||||||
|
|
||||||
|
#set input directories and data
|
||||||
|
#tidal boundary data
|
||||||
|
tides_csv='C:/Users/z5025317/OneDrive - UNSW/Hunter_CC_Modeling/07_Modelling/01_Input/Tide Generator/Tidal Simulation Python Script (BMM)/Tides_1990_2010.csv'
|
||||||
|
#CSV file of mesh nodes and corresponding chainages
|
||||||
|
nodes_csv = 'H:/WRL_Projects/Hunter_CC_Modeling/Module_6/03_Results/Chainages/Hunter_nodes.csv'
|
||||||
|
#River flow boundary
|
||||||
|
Flow_csv = 'H:/WRL_Projects/Hunter_CC_Modeling/Module_6/01_Input/BCGeneration/Scenarios/Calibration/Calibration_Greta.csv'
|
||||||
|
#==========================================================#
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#set plot parameters
|
||||||
|
ALPHA_figs = 1
|
||||||
|
font = {'family' : 'sans-serif',
|
||||||
|
'weight' : 'normal',
|
||||||
|
'size' : 14}
|
||||||
|
matplotlib.rc('font', **font)
|
||||||
|
#==========================================================#
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#output_directory = 'J:/Project wrl2016032/NARCLIM_Raw_Data/Extracted'
|
||||||
|
if not os.path.exists(output_directory + '/' + Plot_scenario):
|
||||||
|
os.makedirs(output_directory+ '/' + Plot_scenario)
|
||||||
|
print('-------------------------------------------')
|
||||||
|
print("output directory folder didn't exist and was generated")
|
||||||
|
print('-------------------------------------------')
|
||||||
|
#==========================================================#
|
||||||
|
|
||||||
|
|
||||||
|
#========================================================#
|
||||||
|
#automated part of the code doing the data extraction
|
||||||
|
#==========================================================
|
||||||
|
|
||||||
|
|
||||||
|
#read csv file with nodes to extract data from
|
||||||
|
node = pd.read_csv(nodes_csv)['Hunter'].values
|
||||||
|
chainages = pd.read_csv(nodes_csv)['x_km'].values
|
||||||
|
|
||||||
|
#Load boundary flow data
|
||||||
|
Flow_df = pd.read_csv(Flow_csv, parse_dates=True, dayfirst=True, index_col=0)['Q[ML/d]']
|
||||||
|
Flow_df.columns = ['Q[ML/d]']
|
||||||
|
Flow_df = Flow_df[datetime.strptime(startdate , '%Y %m %d').date():datetime.strptime(enddate, '%Y %m %d').date()]
|
||||||
|
Flow_df.plot()
|
||||||
|
#Load tide boundary data
|
||||||
|
tides_dfm = pd.read_csv(tides_csv, parse_dates=True, index_col=0)
|
||||||
|
tides_dfm.columns = ['tide']
|
||||||
|
|
||||||
|
#read csv file with extracted RMA data
|
||||||
|
#RMA_df = pd.read_csv(RMA_data_csv, parse_dates=True, index_col=0)
|
||||||
|
|
||||||
|
#load RMA2 data
|
||||||
|
HD_Summary_df = pd.DataFrame()
|
||||||
|
for variable in HDvariables:
|
||||||
|
Summary_df = pd.DataFrame()
|
||||||
|
df = pd.DataFrame()
|
||||||
|
for f in fs:
|
||||||
|
#set input and output directories
|
||||||
|
input_directory = 'H:/WRL_Projects/Hunter_CC_Modeling/Module_6/03_Results/Output/' + f
|
||||||
|
# Set working direcotry (where postprocessed NARClIM data is located)
|
||||||
|
os.chdir(input_directory)
|
||||||
|
#==========================================================#
|
||||||
|
#Load data file
|
||||||
|
if variable == 'depth' or variable == 'elev':
|
||||||
|
Clim_Var_CSVs = glob.glob('*' + variable + '*')
|
||||||
|
clim_var_csv_path = Clim_Var_CSVs[0]
|
||||||
|
df = pd.read_csv(clim_var_csv_path, index_col=False, sep=' ', nrows= maxrowsincsv)
|
||||||
|
df.index = pd.to_datetime(df.Year, format = '%Y') + pd.to_timedelta(df.Hour, unit='h')
|
||||||
|
df= df.drop(columns=['Year', 'Hour'])
|
||||||
|
a=len(df.columns)-1
|
||||||
|
df=df.iloc[:,:a]
|
||||||
|
if variable == 'vel':
|
||||||
|
#x velocity
|
||||||
|
Clim_Var_CSVs = glob.glob('*' +'x'+ variable + '*')
|
||||||
|
clim_var_csv_path = Clim_Var_CSVs[0]
|
||||||
|
df = pd.read_csv(clim_var_csv_path, index_col=False, sep=' ', nrows= maxrowsincsv)
|
||||||
|
df.index = pd.to_datetime(df.Year, format = '%Y') + pd.to_timedelta(df.Hour, unit='h')
|
||||||
|
dfx= df.drop(columns=['Year', 'Hour','1'])
|
||||||
|
#y velocity
|
||||||
|
Clim_Var_CSVs = glob.glob('*' +'y'+ variable + '*')
|
||||||
|
clim_var_csv_path = Clim_Var_CSVs[0]
|
||||||
|
df = pd.read_csv(clim_var_csv_path, index_col=False, sep=' ',nrows= maxrowsincsv)
|
||||||
|
df.index = pd.to_datetime(df.Year, format = '%Y') + pd.to_timedelta(df.Hour, unit='h')
|
||||||
|
dfy= df.drop(columns=['Year', 'Hour','1'])
|
||||||
|
df = np.sqrt(dfx*dfx + dfy*dfy)
|
||||||
|
df.columns = df.columns + '_'+ f + '_'+ variable
|
||||||
|
#cut down the df to start and end date
|
||||||
|
df = df[datetime.strptime(startdate , '%Y %m %d').date():datetime.strptime(enddate, '%Y %m %d').date()]
|
||||||
|
Summary_df = pd.concat([Summary_df, df], axis=1, join='outer')
|
||||||
|
HD_Summary_df = pd.concat([HD_Summary_df , Summary_df], axis=1, join='outer')
|
||||||
|
|
||||||
|
|
||||||
|
#Summary_df.columns = chainages
|
||||||
|
|
||||||
|
|
||||||
|
#subset the input data frame
|
||||||
|
Present_df = HD_Summary_df.filter(regex='Hwq003').filter(regex='elev')
|
||||||
|
Far_future_df = HD_Summary_df.filter(regex='Hwq005').filter(regex='elev')
|
||||||
|
|
||||||
|
#Create Bathymetry along the nodes and chainages
|
||||||
|
Elev_df = HD_Summary_df.filter(regex='Hwq003').filter(regex='elev')
|
||||||
|
Elev_df.columns = chainages
|
||||||
|
Depth_df = HD_Summary_df.filter(regex='Hwq003').filter(regex='depth')
|
||||||
|
Depth_df.columns = chainages
|
||||||
|
Bathy_df = pd.DataFrame(Elev_df.loc[maxtide_index] - Depth_df.loc[maxtide_index])
|
||||||
|
Bathy_df.columns = ['Bathymetry']
|
||||||
|
Bathy_df.plot()
|
||||||
|
|
||||||
|
bathy_out_path = 'H:/WRL_Projects/Hunter_CC_Modeling/Module_6/03_Results/Chainages/Hunter_nodes_bathy.csv'
|
||||||
|
Bathy_df.to_csv(bathy_out_path)
|
||||||
|
#plt.show()
|
||||||
|
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#Tidal analysis
|
||||||
|
#==========================================================#
|
||||||
|
#read in tide data
|
||||||
|
tides_df = tides_dfm[datetime.strptime(tideanalysis_day , '%Y %m %d').date()- timedelta(days=2) : datetime.strptime(tideanalysis_day , '%Y %m %d').date() + timedelta(days=3) ]
|
||||||
|
central_tides_df = tides_dfm[datetime.strptime(tideanalysis_day , '%Y %m %d').date():datetime.strptime(tideanalysis_day , '%Y %m %d').date()]
|
||||||
|
|
||||||
|
maxtide_index = central_tides_df['tide'].idxmax()
|
||||||
|
end_maxtide_index = maxtide_index + timedelta(days=0.4)
|
||||||
|
beg_maxtide_index = maxtide_index - timedelta(days=0.2)
|
||||||
|
short_tides_df = tides_df[beg_maxtide_index: end_maxtide_index]
|
||||||
|
short_tides_df.plot(cmap='viridis', legend=True)
|
||||||
|
mintide_index = short_tides_df['tide'].idxmin()
|
||||||
|
|
||||||
|
#plot the minimum and maximum elevation along the estuary occuring within a single tidal cycle
|
||||||
|
Short_tide_elev_df = HD_Summary_df.filter(regex='elev')[min(short_tides_df.index):max(short_tides_df.index)]
|
||||||
|
max_min_1cycle_elev_0slr = pd.concat([Short_tide_elev_df.filter(regex=fs[0]).max(), Short_tide_elev_df.filter(regex=fs[0]).min()], axis=1, join='inner')
|
||||||
|
max_min_1cycle_elev_09slr = pd.concat([Short_tide_elev_df.filter(regex=fs[1]).max(), Short_tide_elev_df.filter(regex=fs[1]).min()], axis=1, join='inner')
|
||||||
|
max_min_1cycle_elev_0slr.index = chainages
|
||||||
|
max_min_1cycle_elev_09slr.index = chainages
|
||||||
|
max_min_1cycle_elev = pd.concat([max_min_1cycle_elev_0slr, max_min_1cycle_elev_09slr], axis=1, join='outer')
|
||||||
|
max_min_1cycle_elev.columns = ['MaxElev 0 SLR','MinElev 0 SLR','MaxElev 0.9 SLR','MinElev 0.9 SLR' ]
|
||||||
|
max_min_1cycle_elev.plot(cmap='viridis', legend=True)
|
||||||
|
|
||||||
|
#plot the elevation along the estuary at exactly the time of high and low tide
|
||||||
|
max_min_extime_elev_0slr = pd.concat([HD_Summary_df.filter(regex=fs[0]).filter(regex='elev').loc[maxtide_index], Summary_df.filter(regex=fs[0]).loc[mintide_index]], axis=1, join='outer')
|
||||||
|
max_min_extime_elev_09slr = pd.concat([HD_Summary_df.filter(regex=fs[1]).filter(regex='elev').loc[maxtide_index], Summary_df.filter(regex=fs[1]).loc[mintide_index]], axis=1, join='outer')
|
||||||
|
max_min_extime_elev_0slr.index = chainages
|
||||||
|
max_min_extime_elev_09slr.index = chainages
|
||||||
|
max_min_extime_elev = pd.concat([max_min_extime_elev_0slr, max_min_extime_elev_09slr], axis=1, join='outer')
|
||||||
|
max_min_extime_elev.columns = ['HigT Elev 0SLR','LowT Elev 0SLR','HigT Elev 0.9 SLR','LowT Elev 0.9 SLR' ]
|
||||||
|
max_min_extime_elev.plot(cmap='viridis', legend=True)
|
||||||
|
|
||||||
|
png_out_name = output_directory +'/' + Plot_scenario + '/' + variable + '_high_low_tide_analysis_' + Plot_scenario + '.pdf'
|
||||||
|
fig = plt.figure(figsize=(17,20))
|
||||||
|
ax=plt.subplot(3,1,1)
|
||||||
|
plt.title('Max and min water surface elevation along the estuary over one tidal cycle')
|
||||||
|
ax.set_prop_cycle(color=['slateblue', 'slateblue', 'tomato', 'tomato'], linestyle=['--', '-', '--', '-'], lw=[2,2,2,2])
|
||||||
|
max_min_1cycle_elev.plot( legend=False, ax=ax)
|
||||||
|
plt.axhline(y=0, color='slateblue', linestyle='--', lw=1, alpha=0.5)
|
||||||
|
plt.axhline(y=0.9, color='tomato', linestyle='--', lw=1, alpha=0.5)
|
||||||
|
plt.ylim(ylims)
|
||||||
|
plt.ylabel("Water level [m AHD]")
|
||||||
|
plt.xlabel("Distance from ocean boundary [km]")
|
||||||
|
# Put a legend to the right of the current axis
|
||||||
|
#lgd = ax.legend(loc='center left', bbox_to_anchor=(1, 0.5))
|
||||||
|
ax.legend()
|
||||||
|
#plot tides
|
||||||
|
ax=plt.subplot(3,1,2)
|
||||||
|
plt.title('Max and min water surface elevation along the estuary at time of high & low tide')
|
||||||
|
ax.set_prop_cycle(color=['slateblue', 'slateblue', 'tomato', 'tomato'], linestyle=['--', '-', '--', '-'], lw=[2,2,2,2])
|
||||||
|
max_min_extime_elev.plot(legend=False, ax=ax)
|
||||||
|
plt.ylabel("Water level [m AHD]")
|
||||||
|
plt.ylim(ylims)
|
||||||
|
plt.xlabel("Distance from ocean boundary [km]")
|
||||||
|
#lgd = ax.legend(loc='center left', bbox_to_anchor=(1, 0.5))
|
||||||
|
ax.legend()
|
||||||
|
#plot tides
|
||||||
|
ax=plt.subplot(3,1,3)
|
||||||
|
plt.ylim(ylims)
|
||||||
|
plt.title('Tide at open ocean boundary')
|
||||||
|
short_tides_df.plot(cmap='viridis', legend=False, ax=ax)
|
||||||
|
ax.axvline(maxtide_index, color='black', linestyle='--')
|
||||||
|
ax.axvline(mintide_index, color='black', linestyle='-')
|
||||||
|
plt.xlabel("Time")
|
||||||
|
plt.ylabel("Water level [m AHD]")
|
||||||
|
#lgd = ax.legend(loc='center left', bbox_to_anchor=(1, 0.5))
|
||||||
|
ax.legend()
|
||||||
|
fig.tight_layout()
|
||||||
|
fig.savefig(png_out_name)
|
||||||
|
plt.close()
|
||||||
|
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#animate 2 tidal cycles baseline scenario:
|
||||||
|
#==========================================================#
|
||||||
|
Six_day_tide_elev_df = HD_Summary_df.filter(regex=fs[0]).filter(regex='elev')[maxtide_index - timedelta(days=2): maxtide_index + timedelta(days=3)]
|
||||||
|
Six_day_tide_elev_df.columns = chainages
|
||||||
|
Six_day_tides_df = tides_df[maxtide_index - timedelta(days=2): maxtide_index + timedelta(days=3)]
|
||||||
|
Six_day_tides_df.plot(cmap='viridis', legend=True)
|
||||||
|
|
||||||
|
Six_day_flow_df = Flow_df[maxtide_index - timedelta(days=2): maxtide_index + timedelta(days=3)]
|
||||||
|
Six_day_flow_df = pd.concat([Six_day_tides_df, Six_day_flow_df], axis=1, join='outer')['Q[ML/d]'].interpolate()
|
||||||
|
Six_day_flow_df.plot(cmap='viridis', legend=True)
|
||||||
|
|
||||||
|
ii=0
|
||||||
|
for index in Six_day_tide_elev_df.index[0::4]:
|
||||||
|
ii=ii+1
|
||||||
|
#index = Six_day_tide_elev_df.index[1]
|
||||||
|
png_out_path = output_directory + '/' + Plot_scenario + '/TidalCycle_' + variable + '_' + Plot_scenario + '/'
|
||||||
|
if not os.path.exists(png_out_path):
|
||||||
|
os.makedirs(png_out_path)
|
||||||
|
#png_out_name = png_out_path + str(index) + 'longitudinalXS.png'
|
||||||
|
png_out_name = png_out_path + str(ii) + variable + '_longitudinalXS.png'
|
||||||
|
fig = plt.figure(figsize=(17,20))
|
||||||
|
ax=plt.subplot(3,1,1)
|
||||||
|
plt.title('Water surface elevation along the estuary')
|
||||||
|
Six_day_tide_elev_df.loc[index].plot(color='blue', legend=False)
|
||||||
|
#plt.axhline(y=0, color='r', linestyle='--', lw=1, alpha=0.5)
|
||||||
|
plt.axhline(tides_df.loc[index].values, color='black',lw=0.5, linestyle='--')
|
||||||
|
plt.ylim(ylims)
|
||||||
|
plt.ylabel("Water level [m AHD]")
|
||||||
|
plt.xlabel("Distance from ocean boundary [km]")
|
||||||
|
#plot tides
|
||||||
|
ax=plt.subplot(3,1,2)
|
||||||
|
plt.ylim(-1.1,1.3)
|
||||||
|
plt.title('Tide at open ocean boundary')
|
||||||
|
Six_day_tides_df.plot(cmap='viridis', legend=False, ax=ax)
|
||||||
|
ax.axvline(index, color='green', linestyle='--')
|
||||||
|
plt.xlabel("Time")
|
||||||
|
plt.ylabel("Water level [m AHD]")
|
||||||
|
|
||||||
|
ax=plt.subplot(3,1,3)
|
||||||
|
#plt.ylim(ylims)
|
||||||
|
plt.title('Flow at the upstream river boundary')
|
||||||
|
Six_day_flow_df.plot(color='black', legend=False, ax=ax)
|
||||||
|
ax.axvline(index, color='green', linestyle='--')
|
||||||
|
plt.xlabel("Time")
|
||||||
|
plt.ylabel("Hunter Inflow [ML/day]")
|
||||||
|
|
||||||
|
fig.tight_layout()
|
||||||
|
fig.savefig(png_out_name)
|
||||||
|
plt.close()
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#animate 2 tidal cycles baseline + SLR scenario:
|
||||||
|
#==========================================================#
|
||||||
|
Six_day_tide_elev_df_0slr = HD_Summary_df.filter(regex=fs[0]).filter(regex='elev')[maxtide_index - timedelta(days=1): maxtide_index + timedelta(days=1)]
|
||||||
|
Six_day_tide_elev_df_0slr.columns = chainages
|
||||||
|
Six_day_tide_elev_df_09slr = HD_Summary_df.filter(regex=fs[1]).filter(regex='elev')[maxtide_index - timedelta(days=1): maxtide_index + timedelta(days=1)]
|
||||||
|
Six_day_tide_elev_df_09slr.columns = chainages
|
||||||
|
Six_day_tides_df = tides_df[maxtide_index - timedelta(days=1): maxtide_index + timedelta(days=1.5)]
|
||||||
|
Six_day_tides_df.plot(cmap='viridis', legend=True)
|
||||||
|
|
||||||
|
ii=0
|
||||||
|
for index in Six_day_tide_elev_df_0slr.index:
|
||||||
|
ii=ii+1
|
||||||
|
#index = Six_day_tide_elev_df_0slr.index[1]
|
||||||
|
png_out_path = output_directory + '/' + Plot_scenario + '/TidalCycle_SLR_' + variable + '_' + Plot_scenario + '/'
|
||||||
|
if not os.path.exists(png_out_path):
|
||||||
|
os.makedirs(png_out_path)
|
||||||
|
|
||||||
|
#png_out_name = png_out_path + str(index) + 'longitudinalXS.png'
|
||||||
|
png_out_name = png_out_path + str(ii) + variable + '_longitudinalXS.png'
|
||||||
|
max_min_extime_elev_both = pd.concat([Six_day_tide_elev_df_0slr.loc[index], Six_day_tide_elev_df_09slr.loc[index]], axis=1, join='outer')
|
||||||
|
max_min_extime_elev_both.columns = ['Present Day','0.9m SLR']
|
||||||
|
|
||||||
|
fig = plt.figure(figsize=(17,12))
|
||||||
|
ax=plt.subplot(2,1,1)
|
||||||
|
plt.ylim(ylims)
|
||||||
|
plt.title('Water surface elevation along the estuary')
|
||||||
|
ax.set_prop_cycle(color=['slateblue','tomato'], linestyle=['-', '-'], lw=[2,2])
|
||||||
|
max_min_extime_elev_both.plot(ax=ax)
|
||||||
|
ax.legend(loc=1)
|
||||||
|
plt.axhline(y=0, color='r', linestyle='--', lw=1, alpha=0.5)
|
||||||
|
plt.ylim(-1.1,2.5)
|
||||||
|
plt.ylabel("Water level [m AHD]")
|
||||||
|
plt.xlabel("Distance from ocean boundary [km]")
|
||||||
|
|
||||||
|
#plot tides
|
||||||
|
ax=plt.subplot(2,1,2)
|
||||||
|
plt.ylim(-1.1,1.5)
|
||||||
|
plt.title('Tide at open ocean boundary')
|
||||||
|
Six_day_tides_df.plot(cmap='viridis', legend=False, ax=ax)
|
||||||
|
ax.axvline(index, color='green', linestyle='--')
|
||||||
|
plt.xlabel("Time")
|
||||||
|
plt.ylabel("Water level [m AHD]")
|
||||||
|
fig.tight_layout()
|
||||||
|
fig.savefig(png_out_name)
|
||||||
|
plt.close()
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
#for NODE in node:
|
||||||
|
# NODE = str(NODE)
|
||||||
|
# #=========#
|
||||||
|
# #comparison time series plot at node
|
||||||
|
# #=========#
|
||||||
|
# #out name
|
||||||
|
# png_out_file_name = comparison_code + '_' + variable + '_' + NODE + '_time_series.png'
|
||||||
|
# png_out_path = png_output_directory + '/' + png_out_file_name
|
||||||
|
# #
|
||||||
|
# plotin_df = Summary_df.filter(regex=NODE)
|
||||||
|
# #prepare data frame for plot
|
||||||
|
# fig = plt.figure(figsize=(14,18))
|
||||||
|
# ax=plt.subplot(4,1,1)
|
||||||
|
# #start and end dat of plots
|
||||||
|
# plt.title(variable + '_' + NODE + ' - time series')
|
||||||
|
# start_date = datetime(int('1996'), int('02'), int('01'))
|
||||||
|
# end_date = datetime(int('1996'), int('02'), int('5'))
|
||||||
|
# plotin_df1=plotin_df[start_date:end_date]
|
||||||
|
# ymin = min(plotin_df1.min()) - 0.01 *min(plotin_df1.min())
|
||||||
|
# ymax = max(plotin_df1.max()) + 0.01 *max(plotin_df1.max())
|
||||||
|
# plotin_df1.plot(ylim=(ymin,ymax) ,legend=False, ax=ax)
|
||||||
|
# #plt.legend( loc=1)
|
||||||
|
# plt.xticks([])
|
||||||
|
#
|
||||||
|
# ax=plt.subplot(4,1,2)
|
||||||
|
# start_date = datetime(int('1996'), int('02'), int('01'))
|
||||||
|
# end_date = datetime(int('1996'), int('02'), int('3'))
|
||||||
|
# plotin_df2=plotin_df[start_date:end_date]
|
||||||
|
# ymin = min(plotin_df2.min()) - 0.1 *min(plotin_df2.min())
|
||||||
|
# ymax = max(plotin_df2.max()) + 0.1 *max(plotin_df2.max())
|
||||||
|
# plotin_df2.plot(ylim=(ymin,ymax),legend=False, ax=ax)
|
||||||
|
# #plt.legend( loc=1)
|
||||||
|
# ax.xaxis.grid(False)
|
||||||
|
#
|
||||||
|
# ax=plt.subplot(4,1,3)
|
||||||
|
# plt.title(variable + '_' + NODE + ' - monthly maximum')
|
||||||
|
# Monthly_max = plotin_df.resample('M').max()
|
||||||
|
# Monthly_max.plot(ax=ax,legend=False)
|
||||||
|
# plt.legend( loc=1)
|
||||||
|
# ax.xaxis.grid(False)
|
||||||
|
#
|
||||||
|
# ax=plt.subplot(4,1,4)
|
||||||
|
# plt.title(variable + '_' + NODE + ' - monthly mean')
|
||||||
|
# Monthly_mean = plotin_df.resample('M').mean()
|
||||||
|
# Monthly_mean.plot(ax=ax)
|
||||||
|
# #plt.legend(bbox_to_anchor=(0., 1.02, 1., .102), loc=3,
|
||||||
|
# # ncol=2, mode="expand", borderaxespad=0.)
|
||||||
|
# #plt.legend( loc=1)
|
||||||
|
# ax.xaxis.grid(False)
|
||||||
|
#
|
||||||
|
# #ax.patch.set_alpha(ALPHA_figs)
|
||||||
|
# fig.patch.set_alpha(ALPHA_figs)
|
||||||
|
# fig.tight_layout()
|
||||||
|
# fig.savefig(png_out_path)
|
||||||
|
# plt.close()
|
||||||
|
# #=========#
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -0,0 +1,594 @@
|
|||||||
|
# -*- coding: utf-8 -*-
|
||||||
|
#==========================================================#
|
||||||
|
#Last Updated - June 2018
|
||||||
|
#@author: z5025317 Valentin Heimhuber
|
||||||
|
#code for creating climate prioritization plots for NARCLIM variables.
|
||||||
|
#Inputs: Uses CSV files that contain all 12 NARCLIM model runs time series for 1 grid cell created with: P1_NARCliM_NC_to_CSV_CCRC_SS.py
|
||||||
|
|
||||||
|
#Datum offset factors can be found at https://www.mhl.nsw.gov.au/docs/Data%20Conditions%20and%20Fit%20for%20Purpose.pdf
|
||||||
|
#==========================================================#
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#Load packages
|
||||||
|
#==========================================================#
|
||||||
|
import numpy as np
|
||||||
|
import os
|
||||||
|
import pandas as pd
|
||||||
|
import geopandas as gpd
|
||||||
|
import glob
|
||||||
|
import matplotlib
|
||||||
|
import matplotlib.pyplot as plt
|
||||||
|
from datetime import datetime
|
||||||
|
from datetime import timedelta
|
||||||
|
#from matplotlib.backends.backend_pdf import PdfPages
|
||||||
|
import seaborn
|
||||||
|
matplotlib.style.use('ggplot')
|
||||||
|
#set plot parameters
|
||||||
|
ALPHA_figs = 1
|
||||||
|
font = {'family' : 'sans-serif',
|
||||||
|
'weight' : 'normal',
|
||||||
|
'size' : 14}
|
||||||
|
matplotlib.rc('font', **font)
|
||||||
|
#==========================================================#
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#Set Input parameters
|
||||||
|
#==========================================================#
|
||||||
|
River = 'Macleay'
|
||||||
|
Order_ID = 'Ocean_bdr' #choose order column name
|
||||||
|
startdate = '2007 04 13'
|
||||||
|
enddate = '2007 04 21'
|
||||||
|
tideanalysis_day = '2018 06 01'
|
||||||
|
#usually the min and max observed water levels in the estuary in AHD used for plot ylims
|
||||||
|
#========================================================#
|
||||||
|
|
||||||
|
|
||||||
|
#========================================================#
|
||||||
|
#mostly automated part of the code but might have to be double checked - debugged
|
||||||
|
#========================================================#
|
||||||
|
#set directory path for input and output files
|
||||||
|
main_input_directory = 'J:/Project/wrl2018064 Fisheries RAP/04_Working/05_Modelling/RMA/HEMIP/Global_Data/MHL_Gauge_Data/Analysis/'
|
||||||
|
output_directory = 'J:/Project/wrl2018064 Fisheries RAP/04_Working/05_Modelling/RMA/HEMIP/Global_Data/MHL_Gauge_Data/Analysis/Postprocessed'
|
||||||
|
if not os.path.exists(output_directory + '/' ):
|
||||||
|
os.makedirs(output_directory+ '/' )
|
||||||
|
|
||||||
|
|
||||||
|
#load MHL gauge shapefile to store the results of the statistics
|
||||||
|
MHL_gauges_df = gpd.read_file('J:/Project/wrl2018064 Fisheries RAP/04_Working/05_Modelling/RMA/HEMIP/Global_Data/GIS/MHL_gauges_received_MGA56.shp')
|
||||||
|
#MHL_gauges_df = MHL_gauges_df.loc[MHL_gauges_df['River'] == River]
|
||||||
|
MHL_gauges_df = MHL_gauges_df.loc[MHL_gauges_df[Order_ID].notnull()]
|
||||||
|
MHL_gauges_df = pd.DataFrame(MHL_gauges_df)
|
||||||
|
MHL_gauges_df = MHL_gauges_df.reset_index()
|
||||||
|
gauges = MHL_gauges_df['Station Na'].values
|
||||||
|
gauge_type = MHL_gauges_df[Order_ID].values
|
||||||
|
#rivers = MHL_gauges_df['River'].values
|
||||||
|
order_dict = dict(zip(gauges, gauge_type))
|
||||||
|
|
||||||
|
#Load in situ gauge data
|
||||||
|
WL_df = pd.DataFrame()
|
||||||
|
for gauge in gauges:
|
||||||
|
#gauge = gauges[1]
|
||||||
|
#gauge = 'Harrington'
|
||||||
|
print('loading MHL gauge data for ' + str(gauge))
|
||||||
|
CSVpath = glob.glob('J:/Project/wrl2018064 Fisheries RAP/04_Working/05_Modelling/RMA/HEMIP/Global_Data/MHL_Gauge_Data/20200409_Recieved/*/' + '*' + gauge.replace(" ", "") + '*' )
|
||||||
|
Full_df = pd.read_csv(CSVpath[0] ,header= 0, skiprows= 30, parse_dates = True)
|
||||||
|
Full_df.index = pd.to_datetime(Full_df.Date, format = '%d/%m/%Y') + pd.to_timedelta(Full_df.Time, unit='h')
|
||||||
|
#Full_df = Full_df.loc[datetime.strptime(startdate , '%Y %m %d').date() : datetime.strptime(enddate , '%Y %m %d').date()]
|
||||||
|
Full_df = Full_df.iloc[:,[-2]]
|
||||||
|
Full_df.columns = [gauge]
|
||||||
|
Full_df = Full_df.loc[~Full_df.index.duplicated(keep='first')] #get rid of possible duplicate dates
|
||||||
|
Full_df = Full_df.replace(to_replace ='---', value =np.NaN) #--- is used as the no data value in the MHL data provided
|
||||||
|
Full_df = pd.DataFrame(pd.to_numeric(Full_df[gauge]))
|
||||||
|
Full_df = Full_df - np.float(MHL_gauges_df['AHDadjust'][MHL_gauges_df['Station Na']==gauge]) #subtract the datum adjustment factor provided by MHL as written in the shapefile
|
||||||
|
WL_df = pd.concat([WL_df, Full_df], axis=1)
|
||||||
|
#postprocess the in situ gauge dataframe
|
||||||
|
#WL_df = WL_df.replace(to_replace ='---', value =np.NaN) #--- is used as the no data value in the MHL data provided
|
||||||
|
#WL_df = WL_df.convert_objects(convert_numeric=True)
|
||||||
|
#WL_df = WL_df - datum_offset
|
||||||
|
order_colnames=[]
|
||||||
|
for colname in WL_df.columns:
|
||||||
|
order_colnames.append(str(order_dict[colname]) + '_' + colname)
|
||||||
|
#WL_df.columns = order_colnames
|
||||||
|
WL_df.columns = [str(s) + '_MHL' for s in order_colnames]
|
||||||
|
order_colnames.sort() #this will later be used to loop through the MHL gauges in a downstream to upstream order
|
||||||
|
order_colnames = pd.Series(order_colnames).str.replace("(",'')
|
||||||
|
order_colnames = pd.Series(order_colnames).str.replace(")",'')
|
||||||
|
order_colnames = order_colnames[~order_colnames.duplicated(keep='first')]
|
||||||
|
print('Performing analysis in the following order of locations')
|
||||||
|
print(order_colnames)
|
||||||
|
#========================================================#
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
#plot annual MSL for all open ocean gauges
|
||||||
|
ylims = [-0.2,0.2]
|
||||||
|
Open_ocean_only_df = WL_df.filter(regex='1.0')
|
||||||
|
Open_ocean_only_df.columns
|
||||||
|
Open_ocean_only_df_annual = Open_ocean_only_df.resample('A').mean()
|
||||||
|
png_out_name = output_directory + '/Annual mean sea levels.pdf'
|
||||||
|
fig = plt.figure(figsize=(40,18))
|
||||||
|
ax=plt.subplot(1,1,1)
|
||||||
|
plt.title('Annual mean sea levels at MHL open ocean gauges')
|
||||||
|
ax.set_prop_cycle(color=['steelblue', 'coral', 'red', 'deeppink'],linestyle=[ '-', '-','--','-'], lw=[2,2,2,2])
|
||||||
|
Open_ocean_only_df_annual.iloc[:,[0,1,2,3]].plot( legend=False,style=['+-','o-','.--','s:'], ax=ax)
|
||||||
|
plt.axhline(y=0, color='slateblue', linestyle='--', lw=1, alpha=0.5)
|
||||||
|
#plt.axhline(y=0.9, color='tomato', linestyle='--', lw=1, alpha=0.5)
|
||||||
|
plt.ylim(ylims)
|
||||||
|
plt.ylabel("Water level [m AHD]")
|
||||||
|
plt.xlabel("Time")
|
||||||
|
# Put a legend to the right of the current axis
|
||||||
|
#lgd = ax.legend(loc='center left', bbox_to_anchor=(1, 0.5))
|
||||||
|
ax.legend()
|
||||||
|
#plot tides
|
||||||
|
#ax=plt.subplot(2,1,2)
|
||||||
|
#plt.title('Max and min water surface elevation along the estuary at time of high & low tide')
|
||||||
|
#ax.set_prop_cycle(color=['slateblue', 'tomato', ], linestyle=[ '-', '-'], lw=[2,2])
|
||||||
|
#WL_df.iloc[:,[2,3]].plot(legend=False, ax=ax)
|
||||||
|
#plt.ylabel("Water level [m AHD]")
|
||||||
|
#plt.ylim(ylims)
|
||||||
|
#plt.xlabel("Time")
|
||||||
|
##lgd = ax.legend(loc='center left', bbox_to_anchor=(1, 0.5))
|
||||||
|
#ax.legend()
|
||||||
|
#plot tides
|
||||||
|
fig.tight_layout()
|
||||||
|
fig.savefig(png_out_name)
|
||||||
|
plt.close()
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
#plot annual MSL for all open ocean gauges
|
||||||
|
ylims = [-0.5,0.5]
|
||||||
|
Open_ocean_only_df = WL_df.filter(regex='1.0')
|
||||||
|
Open_ocean_only_df_annual = Open_ocean_only_df.resample('M').mean()
|
||||||
|
Plot_Title = 'Monthly mean sea levels at MHL open ocean gauges'
|
||||||
|
fig = plt.figure(figsize=(40,18))
|
||||||
|
ax=plt.subplot(1,1,1)
|
||||||
|
plt.title(Plot_Title)
|
||||||
|
png_out_name = output_directory + '/' + Plot_Title + '.pdf'
|
||||||
|
ax.set_prop_cycle(color=['steelblue', 'coral', 'red', 'deeppink'],linestyle=[ '-', '-','--','-'], lw=[2,2,2,2])
|
||||||
|
Open_ocean_only_df_annual.iloc[:,[0,1,2,3]].plot( legend=False,style=['+-','o-','.--','s:'], ax=ax)
|
||||||
|
plt.axhline(y=0, color='slateblue', linestyle='--', lw=1, alpha=0.5)
|
||||||
|
#plt.axhline(y=0.9, color='tomato', linestyle='--', lw=1, alpha=0.5)
|
||||||
|
plt.ylim(ylims)
|
||||||
|
plt.ylabel("Water level [m relative]")
|
||||||
|
plt.xlabel("Time")
|
||||||
|
# Put a legend to the right of the current axis
|
||||||
|
#lgd = ax.legend(loc='center left', bbox_to_anchor=(1, 0.5))
|
||||||
|
ax.legend()
|
||||||
|
#plot tides
|
||||||
|
#ax=plt.subplot(2,1,2)
|
||||||
|
#plt.title('Max and min water surface elevation along the estuary at time of high & low tide')
|
||||||
|
#ax.set_prop_cycle(color=['slateblue', 'tomato', ], linestyle=[ '-', '-'], lw=[2,2])
|
||||||
|
#WL_df.iloc[:,[2,3]].plot(legend=False, ax=ax)
|
||||||
|
#plt.ylabel("Water level [m AHD]")
|
||||||
|
#plt.ylim(ylims)
|
||||||
|
#plt.xlabel("Time")
|
||||||
|
##lgd = ax.legend(loc='center left', bbox_to_anchor=(1, 0.5))
|
||||||
|
#ax.legend()
|
||||||
|
#plot tides
|
||||||
|
fig.tight_layout()
|
||||||
|
fig.savefig(png_out_name)
|
||||||
|
plt.close()
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
#plot time series for a few windows
|
||||||
|
ylims = [-1,1.5]
|
||||||
|
Open_ocean_only_df = WL_df.filter(regex='1.0')
|
||||||
|
halfwindow = 15
|
||||||
|
Open_ocean_only_df = Open_ocean_only_df[datetime.strptime(tideanalysis_day , '%Y %m %d').date()- timedelta(days=halfwindow) : datetime.strptime(tideanalysis_day , '%Y %m %d').date() + timedelta(days=halfwindow) ]
|
||||||
|
#Open_ocean_only_df = Open_ocean_only_df.iloc[:,[0,1,2,3]][Open_ocean_only_df.iloc[:,0].notnull()]
|
||||||
|
Plot_Title = 'water level time series '+ tideanalysis_day + ' _window_of_' + str(halfwindow*2) +'_days'
|
||||||
|
fig = plt.figure(figsize=(40,18))
|
||||||
|
ax=plt.subplot(1,1,1)
|
||||||
|
plt.title(Plot_Title)
|
||||||
|
png_out_name = output_directory + '/' + Plot_Title + '.pdf'
|
||||||
|
ax.set_prop_cycle(color=['steelblue', 'coral', 'green', 'deeppink'],linestyle=[ '-', '-','--','-'], lw=[2,2,2,2])
|
||||||
|
Open_ocean_only_df.iloc[:,[0,1,2,3]].interpolate(method='linear').plot( legend=False, ax=ax)
|
||||||
|
plt.axhline(y=0, color='slateblue', linestyle='--', lw=1, alpha=0.5)
|
||||||
|
#plt.axhline(y=0.9, color='tomato', linestyle='--', lw=1, alpha=0.5)
|
||||||
|
plt.ylim(ylims)
|
||||||
|
plt.ylabel("Water level [m relative]")
|
||||||
|
plt.xlabel("Time")
|
||||||
|
# Put a legend to the right of the current axis
|
||||||
|
#lgd = ax.legend(loc='center left', bbox_to_anchor=(1, 0.5))
|
||||||
|
ax.legend()
|
||||||
|
#plot tides
|
||||||
|
#ax=plt.subplot(2,1,2)
|
||||||
|
#plt.title('Max and min water surface elevation along the estuary at time of high & low tide')
|
||||||
|
#ax.set_prop_cycle(color=['slateblue', 'tomato', ], linestyle=[ '-', '-'], lw=[2,2])
|
||||||
|
#WL_df.iloc[:,[2,3]].plot(legend=False, ax=ax)
|
||||||
|
#plt.ylabel("Water level [m AHD]")
|
||||||
|
#plt.ylim(ylims)
|
||||||
|
#plt.xlabel("Time")
|
||||||
|
##lgd = ax.legend(loc='center left', bbox_to_anchor=(1, 0.5))
|
||||||
|
#ax.legend()
|
||||||
|
#plot tides
|
||||||
|
fig.tight_layout()
|
||||||
|
fig.savefig(png_out_name)
|
||||||
|
plt.close()
|
||||||
|
|
||||||
|
|
||||||
|
#plot time series for a few windows
|
||||||
|
ylims = [-1,1.5]
|
||||||
|
xlocation = datetime.strptime(tideanalysis_day , '%Y %m %d').date()
|
||||||
|
Regex = 'Port Macquarie'
|
||||||
|
Regex = 'Tweed'
|
||||||
|
#Regex = 'haven'
|
||||||
|
#'Crowdy', 'Harrington'
|
||||||
|
Open_ocean_only_df = WL_df.filter(regex=Regex )
|
||||||
|
halfwindow = 200
|
||||||
|
Open_ocean_only_df = Open_ocean_only_df[datetime.strptime(tideanalysis_day , '%Y %m %d').date()- timedelta(days=halfwindow) : datetime.strptime(tideanalysis_day , '%Y %m %d').date() + timedelta(days=halfwindow) ]
|
||||||
|
#Open_ocean_only_df = Open_ocean_only_df.iloc[:,[0,1,2,3]][Open_ocean_only_df.iloc[:,0].notnull()]
|
||||||
|
Plot_Title = 'water level time series ocean vs entrance '+ tideanalysis_day + ' _window_of_' + str(halfwindow*2) +'_days_' + Regex + 'V2'
|
||||||
|
fig = plt.figure(figsize=(40,18))
|
||||||
|
ax=plt.subplot(1,1,1)
|
||||||
|
plt.title(Plot_Title)
|
||||||
|
png_out_name = output_directory + '/' + Plot_Title + '.pdf'
|
||||||
|
ax.set_prop_cycle(color=['steelblue', 'coral', 'green', 'deeppink'],linestyle=[ '-', '-','--','-'], lw=[2,2,2,2])
|
||||||
|
Open_ocean_only_df.iloc[:,[0,1]].interpolate(method='linear').plot( legend=False, ax=ax)
|
||||||
|
plt.axhline(y=0, color='slateblue', linestyle='--', lw=1, alpha=0.5)
|
||||||
|
|
||||||
|
plt.axhline(y=np.nanpercentile(Open_ocean_only_df.iloc[:,[0]],50), color='steelblue', linestyle='solid', lw=2, alpha=1)
|
||||||
|
plt.text(xlocation, (np.nanpercentile(Open_ocean_only_df.iloc[:,[0]],50)), 'MSL= ' + str(np.round(np.nanpercentile(Open_ocean_only_df.iloc[:,[0]],50),2)) , ha='left', va='bottom')
|
||||||
|
|
||||||
|
plt.axhline(y=np.nanpercentile(Open_ocean_only_df.iloc[:,[1]],50), color='red', linestyle='solid', lw=2, alpha=1)
|
||||||
|
plt.text(xlocation , (np.nanpercentile(Open_ocean_only_df.iloc[:,[1]],50)), 'MSL= ' + str(np.round(np.nanpercentile(Open_ocean_only_df.iloc[:,[1]],50),2)), ha='left', va='bottom')
|
||||||
|
|
||||||
|
#plt.axhline(y=0.9, color='tomato', linestyle='--', lw=1, alpha=0.5)
|
||||||
|
plt.ylim(ylims)
|
||||||
|
plt.ylabel("Water level [m relative]")
|
||||||
|
plt.xlabel("Time")
|
||||||
|
# Put a legend to the right of the current axis
|
||||||
|
#lgd = ax.legend(loc='center left', bbox_to_anchor=(1, 0.5))
|
||||||
|
ax.legend()
|
||||||
|
#plot tides
|
||||||
|
#ax=plt.subplot(2,1,2)
|
||||||
|
#plt.title('Max and min water surface elevation along the estuary at time of high & low tide')
|
||||||
|
#ax.set_prop_cycle(color=['slateblue', 'tomato', ], linestyle=[ '-', '-'], lw=[2,2])
|
||||||
|
#WL_df.iloc[:,[2,3]].plot(legend=False, ax=ax)
|
||||||
|
#plt.ylabel("Water level [m AHD]")
|
||||||
|
#plt.ylim(ylims)
|
||||||
|
#plt.xlabel("Time")
|
||||||
|
##lgd = ax.legend(loc='center left', bbox_to_anchor=(1, 0.5))
|
||||||
|
#ax.legend()
|
||||||
|
#plot tides
|
||||||
|
fig.tight_layout()
|
||||||
|
fig.savefig(png_out_name)
|
||||||
|
plt.close()
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
#========================================================#
|
||||||
|
#fully automated part of the code doing the data extraction
|
||||||
|
#========================================================#
|
||||||
|
#load RMA2 data
|
||||||
|
Summary_df = pd.DataFrame()
|
||||||
|
df = pd.DataFrame()
|
||||||
|
for f in fs:
|
||||||
|
#set input and output directories
|
||||||
|
input_directory = main_input_directory + f + '_' + Order_ID
|
||||||
|
# Set working direcotry (where postprocessed NARClIM data is located)
|
||||||
|
os.chdir(input_directory)
|
||||||
|
#Load data file
|
||||||
|
if variable == 'depth' or variable == 'elev':
|
||||||
|
Clim_Var_CSVs = glob.glob('*' + variable + '*')
|
||||||
|
clim_var_csv_path = Clim_Var_CSVs[0]
|
||||||
|
df = pd.read_csv(clim_var_csv_path, index_col=False, sep=' ', nrows= maxrowsincsv)
|
||||||
|
df.index = pd.to_datetime(df.Year, format = '%Y') + pd.to_timedelta(df.Hour, unit='h')
|
||||||
|
df= df.drop(columns=['Year', 'Hour'])
|
||||||
|
a=len(df.columns)-1
|
||||||
|
df=df.iloc[:,:a]
|
||||||
|
if variable == 'vel':
|
||||||
|
#x velocity
|
||||||
|
Clim_Var_CSVs = glob.glob('*' +'x'+ variable + '*')
|
||||||
|
clim_var_csv_path = Clim_Var_CSVs[0]
|
||||||
|
df = pd.read_csv(clim_var_csv_path, index_col=False, sep=' ', nrows= maxrowsincsv)
|
||||||
|
df.index = pd.to_datetime(df.Year, format = '%Y') + pd.to_timedelta(df.Hour, unit='h')
|
||||||
|
dfx= df.drop(columns=['Year', 'Hour','1'])
|
||||||
|
#y velocity
|
||||||
|
Clim_Var_CSVs = glob.glob('*' +'y'+ variable + '*')
|
||||||
|
clim_var_csv_path = Clim_Var_CSVs[0]
|
||||||
|
df = pd.read_csv(clim_var_csv_path, index_col=False, sep=' ',nrows= maxrowsincsv)
|
||||||
|
df.index = pd.to_datetime(df.Year, format = '%Y') + pd.to_timedelta(df.Hour, unit='h')
|
||||||
|
dfy= df.drop(columns=['Year', 'Hour','1'])
|
||||||
|
df = np.sqrt(dfx*dfx + dfy*dfy)
|
||||||
|
df.columns = df.columns + '_'+ f + '_'+ variable
|
||||||
|
#cut down the df to start and end date
|
||||||
|
df = df[datetime.strptime(startdate , '%Y %m %d').date():datetime.strptime(enddate, '%Y %m %d').date()]
|
||||||
|
Summary_df = pd.concat([Summary_df, df], axis=1, join='outer')
|
||||||
|
HD_Summary_df = Summary_df
|
||||||
|
#========================================================#
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
#========================================================#
|
||||||
|
#interactive data analysis part of the code - alternatively, the dataframe could be written to csv at this stage and analysed with a separate code.
|
||||||
|
#========================================================#
|
||||||
|
#Summary_df.columns = chainages
|
||||||
|
#subset the input data frame
|
||||||
|
Summary_df_nodes = pd.DataFrame()
|
||||||
|
#for node, gauges in nodes:
|
||||||
|
for key,value in node_dict.items():
|
||||||
|
df1 = HD_Summary_df.filter(regex='^'+ str(key)+'_').filter(regex=variable)
|
||||||
|
df1.columns = [value + '_' + str(s) for s in df1.columns]
|
||||||
|
Summary_df_nodes = pd.concat([Summary_df_nodes, df1], axis=1, join='outer')
|
||||||
|
|
||||||
|
for key,value in scenario_dict.items():
|
||||||
|
Summary_df_nodes.columns = pd.Series(Summary_df_nodes.columns).str.replace(key, value)
|
||||||
|
|
||||||
|
combined_df = pd.DataFrame()
|
||||||
|
combined_df = pd.concat([Summary_df_nodes , WL_df], axis=1, join='outer')
|
||||||
|
combined_df.columns = pd.Series(combined_df.columns).str.replace("(",'') #brackets mess up the regex commands below
|
||||||
|
combined_df.columns = pd.Series(combined_df.columns).str.replace(")",'')
|
||||||
|
combined_df_hourly = combined_df.resample('1H').max()
|
||||||
|
|
||||||
|
#this needs to be fixed to be more generic!
|
||||||
|
Histogram_df = combined_df.loc[datetime.strptime(startdate , '%Y %m %d').date() : datetime.strptime(enddate , '%Y %m %d').date()] #dataframe for histogram comparison between RMA and MHL
|
||||||
|
|
||||||
|
#========================================================#
|
||||||
|
#drop first gauge which doesn't have any data in 2006
|
||||||
|
#gauges = gauges[1:]
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
#========================================================#
|
||||||
|
# Plot water level histograms at control points
|
||||||
|
#========================================================#
|
||||||
|
ylims = [-0.9,2.5]
|
||||||
|
#set plot parameters
|
||||||
|
ALPHA_figs = 1
|
||||||
|
font = {'family' : 'sans-serif',
|
||||||
|
'weight' : 'normal',
|
||||||
|
'size' : 5}
|
||||||
|
matplotlib.rc('font', **font)
|
||||||
|
lwd_hist = 2 #line width of histograms
|
||||||
|
|
||||||
|
i=1
|
||||||
|
png_out_name = output_directory + '/' + Plot_scenario + '/RMA_vs_MHL_gauges_water level histogram and exceedance planes '+ startdate + '_' + enddate + '2.pdf'
|
||||||
|
fig = plt.figure(figsize=(len(gauges)*7,12))
|
||||||
|
|
||||||
|
for Gauge in order_colnames:
|
||||||
|
#Gauge = order_colnames[0]
|
||||||
|
ax=plt.subplot(1,len(gauges),i)
|
||||||
|
plt.title( Gauge + ' WL '+ startdate + '-' + enddate)
|
||||||
|
xlocation = 0.6
|
||||||
|
#Gauge_only_df = Histogram_df.filter(regex=Gauge[3:])
|
||||||
|
Gauge_only_df = combined_df.filter(regex=Gauge[3:])
|
||||||
|
#scenario 1
|
||||||
|
TS_1 = Gauge_only_df[Gauge+'_MHL']
|
||||||
|
TS_1.name = 'MHL full period' + str(TS_1.index[0].date()) + '_' + str(TS_1.index[-1].date())
|
||||||
|
if len(TS_1[TS_1.notnull()])>0:
|
||||||
|
color_1 = 'blue'
|
||||||
|
width = 1
|
||||||
|
#full period density comparison for individual gauges overlaid by tidal planes
|
||||||
|
seaborn.kdeplot(TS_1, vertical=True, color=color_1, lw=1, linestyle='dotted', ax=ax)
|
||||||
|
|
||||||
|
Gauge_only_df = Gauge_only_df[Gauge_only_df.iloc[:,0].notnull()]
|
||||||
|
TS_1 = Gauge_only_df[Gauge+'_MHL']
|
||||||
|
TS_1 = TS_1.loc[datetime.strptime(startdate , '%Y %m %d').date() : datetime.strptime(enddate , '%Y %m %d').date()]
|
||||||
|
TS_1.name = 'MHL period from ' + startdate + '_' + enddate
|
||||||
|
if len(TS_1[TS_1.notnull()])>0:
|
||||||
|
color_1 = 'royalblue'
|
||||||
|
width = 1
|
||||||
|
#full period density comparison for individual gauges overlaid by tidal planes
|
||||||
|
seaborn.kdeplot(TS_1, vertical=True, color=color_1, lw=lwd_hist, ax=ax)
|
||||||
|
#seaborn.kdeplot(Gauge_only_df.iloc[:,2], vertical=True, color=color_1, lw=3)
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,87), color=color_1, linestyle='solid', lw=width, alpha=1)
|
||||||
|
plt.text( xlocation , (np.nanpercentile(TS_1,87)), '13% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,93.6), color=color_1, linestyle='dotted', lw=width, alpha=1)
|
||||||
|
plt.text(xlocation , (np.nanpercentile(TS_1,93.6)), '6.4% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,98.7), color=color_1, linestyle='dashed', lw=width, alpha=1)
|
||||||
|
plt.text( xlocation ,np.nanpercentile(TS_1,98.7) , '1.3% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,99.99), color=color_1, linestyle='dashdot', lw=width, alpha=1)
|
||||||
|
plt.text( xlocation ,np.nanpercentile(TS_1,99.99) , '0.01% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,50), color=color_1, linestyle='solid', lw=width, alpha=1)
|
||||||
|
plt.text( xlocation , np.nanpercentile(TS_1,50), '50% exceedance', ha='left', va='bottom')
|
||||||
|
|
||||||
|
#scenario 2
|
||||||
|
#TS_1 = Gauge_only_df.filter(regex='elev')
|
||||||
|
TS_1 = Gauge_only_df.iloc[:,0][Gauge_only_df.iloc[:,0].notnull()]
|
||||||
|
color_1 = 'red'
|
||||||
|
width = 1
|
||||||
|
seaborn.kdeplot(TS_1, vertical=True, color=color_1, lw=lwd_hist, ax=ax)
|
||||||
|
#plt.axhline(y=np.nanpercentile(TS_1,87), color=color_1, linestyle='solid', lw=width, alpha=1)
|
||||||
|
#plt.text( xlocation , (np.nanpercentile(TS_1,87)), '13% exceedance', ha='left', va='bottom')
|
||||||
|
#plt.axhline(y=np.nanpercentile(TS_1,93.6), color=color_1, linestyle='dotted', lw=width, alpha=1)
|
||||||
|
#plt.text(xlocation , (np.nanpercentile(TS_1,93.6)), '6.4% exceedance', ha='left', va='bottom')
|
||||||
|
#plt.axhline(y=np.nanpercentile(TS_1,98.7), color=color_1, linestyle='dashed', lw=width, alpha=1)
|
||||||
|
#plt.text( xlocation ,np.nanpercentile(TS_1,98.7) , '1.3% exceedance', ha='left', va='bottom')
|
||||||
|
#plt.axhline(y=np.nanpercentile(TS_1,99.99), color=color_1, linestyle='dashdot', lw=width, alpha=1)
|
||||||
|
#plt.text( xlocation ,np.nanpercentile(TS_1,99.99) , '0.01% exceedance', ha='left', va='bottom')
|
||||||
|
#plt.axhline(y=np.nanpercentile(TS_1,50), color=color_1, linestyle='solid', lw=width, alpha=1)
|
||||||
|
#plt.text( xlocation , np.nanpercentile(TS_1,50), '50% exceedance', ha='left', va='bottom')
|
||||||
|
|
||||||
|
#scenario 3
|
||||||
|
TS_1 = Gauge_only_df.iloc[:,1][Gauge_only_df.iloc[:,1].notnull()]
|
||||||
|
color_1 = 'limegreen'
|
||||||
|
width = 1
|
||||||
|
seaborn.kdeplot(TS_1, vertical=True, color=color_1, lw=lwd_hist, ax=ax)
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,87), color=color_1, linestyle='solid', lw=width, alpha=1)
|
||||||
|
#plt.text( xlocation , (np.nanpercentile(TS_1,87)), '13% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,93.6), color=color_1, linestyle='dotted', lw=width, alpha=1)
|
||||||
|
#plt.text(xlocation , (np.nanpercentile(TS_1,93.6)), '6.4% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,98.7), color=color_1, linestyle='dashed', lw=width, alpha=1)
|
||||||
|
#plt.text( xlocation ,np.nanpercentile(TS_1,98.7) , '1.3% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,99.99), color=color_1, linestyle='dashdot', lw=width, alpha=1)
|
||||||
|
#plt.text( xlocation ,np.nanpercentile(TS_1,99.99) , '0.01% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,50), color=color_1, linestyle='solid', lw=width, alpha=1)
|
||||||
|
#plt.text( xlocation , np.nanpercentile(TS_1,50), '50% exceedance', ha='left', va='bottom')
|
||||||
|
|
||||||
|
#finish the plot
|
||||||
|
plt.ylim(ylims)
|
||||||
|
if i == 1:
|
||||||
|
plt.ylabel("Water level [m AHD]")
|
||||||
|
|
||||||
|
plt.xlabel("Probability/density")
|
||||||
|
fig.tight_layout()
|
||||||
|
i=i+1
|
||||||
|
fig.savefig(png_out_name)
|
||||||
|
plt.close()
|
||||||
|
#========================================================#
|
||||||
|
|
||||||
|
|
||||||
|
#========================================================#
|
||||||
|
# Plot MHL water levels only
|
||||||
|
#========================================================#
|
||||||
|
ylims = [-1,1.5]
|
||||||
|
#set plot parameters
|
||||||
|
ALPHA_figs = 1
|
||||||
|
font = {'family' : 'sans-serif',
|
||||||
|
'weight' : 'normal',
|
||||||
|
'size' : 6}
|
||||||
|
matplotlib.rc('font', **font)
|
||||||
|
|
||||||
|
i=1
|
||||||
|
png_out_name = output_directory + '/' + Plot_scenario + '/MHL_gauges_water level histograms and exceedance planes '+ startdate + '_' + enddate + '.pdf'
|
||||||
|
fig = plt.figure(figsize=(len(gauges)*5,11))
|
||||||
|
|
||||||
|
for Gauge in order_colnames:
|
||||||
|
#Gauge = order_colnames[0]
|
||||||
|
ax=plt.subplot(1,len(gauges),i)
|
||||||
|
plt.title( Gauge + ' wL '+ startdate + '-' + enddate)
|
||||||
|
xlocation = 0.6
|
||||||
|
TS_1 = combined_df[Gauge+'_MHL']
|
||||||
|
TS_1 = TS_1[TS_1.notnull()]
|
||||||
|
#scenario 1
|
||||||
|
TS_1.name = 'Full Period ' + str(TS_1.index[0].date()) + '_' + str(TS_1.index[-1].date())
|
||||||
|
color_1 = 'royalblue'
|
||||||
|
width = 1
|
||||||
|
#full period density comparison for individual gauges overlaid by tidal planes
|
||||||
|
seaborn.kdeplot(TS_1, vertical=True, color=color_1, lw=2, ax=ax)
|
||||||
|
#seaborn.kdeplot(Gauge_only_df.iloc[:,2], vertical=True, color=color_1, lw=3)
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,87), color=color_1, linestyle='solid', lw=width, alpha=1)
|
||||||
|
plt.text( xlocation , (np.nanpercentile(TS_1,87)), '13% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,93.6), color=color_1, linestyle='dotted', lw=width, alpha=1)
|
||||||
|
plt.text(xlocation , (np.nanpercentile(TS_1,93.6)), '6.4% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,98.7), color=color_1, linestyle='dashed', lw=width, alpha=1)
|
||||||
|
plt.text( xlocation ,np.nanpercentile(TS_1,98.7) , '1.3% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,99.99), color=color_1, linestyle='dashdot', lw=width, alpha=1)
|
||||||
|
plt.text( xlocation ,np.nanpercentile(TS_1,99.99) , '0.01% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,50), color=color_1, linestyle='solid', lw=width, alpha=1)
|
||||||
|
plt.text( xlocation , np.nanpercentile(TS_1,50), '50% exceedance', ha='left', va='bottom')
|
||||||
|
|
||||||
|
#scenario 2
|
||||||
|
#TS_1 = Gauge_only_df.filter(regex='elev')
|
||||||
|
|
||||||
|
TS_1 = TS_1.loc[datetime.strptime(startdate , '%Y %m %d').date() : datetime.strptime(enddate , '%Y %m %d').date()]
|
||||||
|
if len(TS_1[TS_1.notnull()])>0:
|
||||||
|
TS_1.name = 'Period from ' + startdate + '_' + enddate
|
||||||
|
color_1 = 'red'
|
||||||
|
width = 1
|
||||||
|
seaborn.kdeplot(TS_1, vertical=True, color=color_1, lw=2, ax=ax)
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,87), color=color_1, linestyle='solid', lw=width, alpha=1)
|
||||||
|
plt.text( xlocation , (np.nanpercentile(TS_1,87)), '13% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,93.6), color=color_1, linestyle='dotted', lw=width, alpha=1)
|
||||||
|
plt.text(xlocation , (np.nanpercentile(TS_1,93.6)), '6.4% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,98.7), color=color_1, linestyle='dashed', lw=width, alpha=1)
|
||||||
|
plt.text( xlocation ,np.nanpercentile(TS_1,98.7) , '1.3% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,99.99), color=color_1, linestyle='dashdot', lw=width, alpha=1)
|
||||||
|
plt.text( xlocation ,np.nanpercentile(TS_1,99.99) , '0.01% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,50), color=color_1, linestyle='solid', lw=width, alpha=1)
|
||||||
|
plt.text( xlocation , np.nanpercentile(TS_1,50), '50% exceedance', ha='left', va='bottom')
|
||||||
|
|
||||||
|
#finish the plot
|
||||||
|
plt.ylim(ylims)
|
||||||
|
if i == 1:
|
||||||
|
plt.ylabel("Water level [m AHD]")
|
||||||
|
|
||||||
|
plt.xlabel("Probability/density")
|
||||||
|
fig.tight_layout()
|
||||||
|
i=i+1
|
||||||
|
fig.savefig(png_out_name)
|
||||||
|
plt.close()
|
||||||
|
#========================================================#
|
||||||
|
|
||||||
|
|
||||||
|
#========================================================#
|
||||||
|
# Plot time series over various intervals at control points
|
||||||
|
#========================================================#
|
||||||
|
#set plot parameters
|
||||||
|
ALPHA_figs = 1
|
||||||
|
font = {'family' : 'sans-serif',
|
||||||
|
'weight' : 'normal',
|
||||||
|
'size' : 5}
|
||||||
|
matplotlib.rc('font', **font)
|
||||||
|
|
||||||
|
halfwindows = [1,2,5,10,15]
|
||||||
|
for halfwindow in halfwindows:
|
||||||
|
#halfwindow = 10
|
||||||
|
png_out_name = output_directory + '/' + Plot_scenario + '/water level time series '+ startdate + '_' + enddate + ' _window_of_' + str(halfwindow*2) +'_days.pdf'
|
||||||
|
fig = plt.figure(figsize=(10,len(gauges)*3))
|
||||||
|
i=1
|
||||||
|
for Gauge in order_colnames:
|
||||||
|
Gauge_only_df = combined_df.filter(regex=Gauge[3:])
|
||||||
|
combined_df.columns
|
||||||
|
#Gauge_only_df = df1.filter(regex=Gauge)
|
||||||
|
#Gauge_only_df_1 = Gauge_only_df.loc[(Gauge_only_df.index >= '2008-05-09 12:00:00') & (Gauge_only_df.index <= '2008-05-20 12:00:00')]
|
||||||
|
Gauge_only_df_1 = Gauge_only_df[datetime.strptime(tideanalysis_day , '%Y %m %d').date()- timedelta(days=halfwindow) : datetime.strptime(tideanalysis_day , '%Y %m %d').date() + timedelta(days=halfwindow) ]
|
||||||
|
Gauge_only_df_1 = Gauge_only_df_1[Gauge_only_df_1.iloc[:,0].notnull()]
|
||||||
|
ax=plt.subplot(len(gauges),1,i)
|
||||||
|
plt.title('Tidal water levels at ' + Gauge + ' | ' + River +' Estuary')
|
||||||
|
ax.set_prop_cycle(color=['steelblue', 'coral', 'steelblue', 'deeppink'],linestyle=[ '-', '-','--','-'], lw=[0.8,0.8,0.8,0.8])
|
||||||
|
Gauge_only_df_1.iloc[:,[0,1,2]].plot( legend=False, ax=ax)
|
||||||
|
|
||||||
|
plt.axhline(y=0, color='black', linestyle='-', lw=0.8, alpha=0.5)
|
||||||
|
#plt.axhline(y=0.9, color='tomato', linestyle='--', lw=1, alpha=0.5)
|
||||||
|
plt.ylim(ylims)
|
||||||
|
plt.ylabel("Water level [m AHD]")
|
||||||
|
plt.xlabel("Time")
|
||||||
|
ax.legend()
|
||||||
|
fig.tight_layout()
|
||||||
|
i=i+1
|
||||||
|
fig.savefig(png_out_name)
|
||||||
|
plt.close()
|
||||||
|
#========================================================#
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
##========================================================#
|
||||||
|
##write out exceedance data to csv
|
||||||
|
##========================================================#
|
||||||
|
#Summary={}
|
||||||
|
#Summary['13% exceedance'] = Wollow_13ExPr
|
||||||
|
#Summary['6.4% exceedance'] = Wollow_6p4ExPr
|
||||||
|
#Summary['1.3% exceedance'] = Wollow_1_3ExPr
|
||||||
|
#Summary['0.01% exceedance'] = Wollow_0p01ExPr
|
||||||
|
#Summary['50% exceedance'] = Wollow_50ExPr
|
||||||
|
#pdf1 = pd.DataFrame(Summary, index=[0])
|
||||||
|
#pdf1.to_csv(os.path.join( Out_Folder + Gauge + '_entrance_stats.csv'))
|
||||||
|
##========================================================#
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -0,0 +1,99 @@
|
|||||||
|
# -*- coding: utf-8 -*-
|
||||||
|
"""
|
||||||
|
Created on Tue Mar 24 19:02:20 2020
|
||||||
|
|
||||||
|
@author: z5025317
|
||||||
|
"""
|
||||||
|
|
||||||
|
#this code simply opens up all the MHL tide gauge csv files and writes the key information provided in there into a cvs file for GIS import
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#Load packages
|
||||||
|
#==========================================================#
|
||||||
|
import os
|
||||||
|
import pandas as pd
|
||||||
|
import glob
|
||||||
|
import matplotlib
|
||||||
|
import matplotlib.pyplot as plt
|
||||||
|
import numpy as np
|
||||||
|
import seaborn
|
||||||
|
|
||||||
|
os.chdir('C:/Users/z5025317/UNSW/Danial Khojasteh - HEMIP/RMA_result_explorer_code')
|
||||||
|
year = '2015'
|
||||||
|
|
||||||
|
Ocean_gauges_folder = 'J:/Project/wrl2018064 Fisheries RAP/04_Working/05_Modelling/RMA/HEMIP/Global_HEMIP_Data/MHL_Gauge_Data/20200409_Recieved/'
|
||||||
|
filenames = glob.glob(Ocean_gauges_folder +'*/' + '*.csv')
|
||||||
|
|
||||||
|
WL_df = pd.DataFrame()
|
||||||
|
for tgr_csv_name in filenames:
|
||||||
|
print (os.path.basename(tgr_csv_name)[:-11])
|
||||||
|
#tgr_csv_name = filenames[3]
|
||||||
|
Full_df = pd.read_csv(tgr_csv_name ,nrows=7, skiprows= 17, parse_dates = True)
|
||||||
|
Full_df = Full_df.transpose()
|
||||||
|
Full_df['River'] = os.path.basename(os.path.dirname(tgr_csv_name))
|
||||||
|
Full_df2 = pd.read_csv(tgr_csv_name ,header= 0, skiprows= 30, parse_dates = True)
|
||||||
|
Full_df['Start_Date'] =Full_df2.Date[0]
|
||||||
|
Full_df['End_Date'] =Full_df2.Date[len(Full_df2.Date)-1]
|
||||||
|
Full_df2.index = pd.to_datetime(Full_df2.Date, format = '%d/%m/%Y') + pd.to_timedelta(Full_df2.Time, unit='h')
|
||||||
|
Full_df2 = Full_df2.iloc[:,[-2]]
|
||||||
|
Full_df2.columns = ['WL[AHD]']
|
||||||
|
WL_df = pd.concat([WL_df, Full_df], axis=0)
|
||||||
|
|
||||||
|
#WL_df.to_csv(Ocean_gauges_folder + 'summary_dataframe_of_all_gauges4.csv')
|
||||||
|
|
||||||
|
#create a histogram for each gauge if desired
|
||||||
|
#this isn't working yet due to gaps and weird stuff in the data
|
||||||
|
ylims = [-1.5,2.2]
|
||||||
|
#set plot parameters
|
||||||
|
ALPHA_figs = 1
|
||||||
|
font = {'family' : 'sans-serif',
|
||||||
|
'weight' : 'normal',
|
||||||
|
'size' : 6}
|
||||||
|
matplotlib.rc('font', **font)
|
||||||
|
|
||||||
|
pdf_out_name = os.path.dirname(tgr_csv_name) + os.path.basename(tgr_csv_name)[:-11]+ '_histogram.pdf'
|
||||||
|
fig = plt.figure(figsize=(4,8))
|
||||||
|
|
||||||
|
np.array(np.float16(Full_df2['WL[AHD]'])
|
||||||
|
#full period density comparison for individual gauges overlaid by tidal planes
|
||||||
|
Wollow_13ExPr = np.nanpercentile(np.array(Full_df2['WL[AHD]']),87)
|
||||||
|
np.percentile(Full_df2['WL[AHD]'].astype(float), 50)
|
||||||
|
Wollow_6p4ExPr = np.nanpercentile(Full_df2['WL[AHD]'].astype(float),93.6)
|
||||||
|
Wollow_1_3ExPr = np.nanpercentile(Full_df2,98.7)
|
||||||
|
Wollow_0p01ExPr = np.nanpercentile(Full_df2,99.99)
|
||||||
|
Wollow_50ExPr = np.nanpercentile(Full_df2,50)
|
||||||
|
ax=plt.subplot(4,1,i)
|
||||||
|
plt.title( Gauge + ' water level density comparison - Jan 2016- Feb 2020')
|
||||||
|
#WL_df[Gauge].plot.kde(xlim=(-0.5,1),vertical=True, lw=3, ax=ax)
|
||||||
|
seaborn.kdeplot(Full_df2['WL[AHD]'], vertical=True, color='royalblue', lw=3)
|
||||||
|
|
||||||
|
plt.axhline(y=Wollow_13ExPr, color='firebrick', linestyle='--', lw=3, alpha=1)
|
||||||
|
plt.text( xlocation , (Wollow_13ExPr), '13% exceedance', ha='left', va='bottom')
|
||||||
|
|
||||||
|
plt.axhline(y=Wollow_6p4ExPr, color='orange', linestyle='--', lw=3, alpha=1)
|
||||||
|
plt.text(xlocation , (Wollow_6p4ExPr), '6.4% exceedance', ha='left', va='bottom')
|
||||||
|
|
||||||
|
plt.axhline(y=Wollow_1_3ExPr, color='yellow', linestyle='--', lw=3, alpha=1)
|
||||||
|
plt.text( xlocation ,Wollow_1_3ExPr , '1.3% exceedance', ha='left', va='bottom')
|
||||||
|
|
||||||
|
plt.axhline(y=Wollow_0p01ExPr, color='limegreen', linestyle='--', lw=3, alpha=1)
|
||||||
|
plt.text( xlocation , Wollow_0p01ExPr , '0.01% exceedance', ha='left', va='bottom')
|
||||||
|
|
||||||
|
plt.axhline(y=Wollow_50ExPr, color='cyan', linestyle='--', lw=3, alpha=1)
|
||||||
|
plt.text( xlocation , Wollow_50ExPr , '50% exceedance', ha='left', va='bottom')
|
||||||
|
|
||||||
|
plt.ylim(-1,1.7)
|
||||||
|
|
||||||
|
plt.xlabel("Probability/density")
|
||||||
|
plt.ylabel("Water level [m AHD]")
|
||||||
|
|
||||||
|
fig.tight_layout()
|
||||||
|
fig.savefig(png_out_name)
|
||||||
|
plt.close()
|
||||||
|
fig.tight_layout()
|
||||||
|
fig.savefig(png_out_name)
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -0,0 +1,50 @@
|
|||||||
|
# -*- coding: utf-8 -*-
|
||||||
|
"""
|
||||||
|
Created on Tue Mar 24 19:02:20 2020
|
||||||
|
|
||||||
|
@author: z5025317
|
||||||
|
"""
|
||||||
|
|
||||||
|
#creates a tide boundary time series in RMA format based on MHL tide data as provided for the RAP
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#Load packages
|
||||||
|
#==========================================================#
|
||||||
|
import numpy as np
|
||||||
|
import os
|
||||||
|
import pandas as pd
|
||||||
|
import glob
|
||||||
|
|
||||||
|
os.chdir('C:/Users/z5025317/UNSW/Danial Khojasteh - HEMIP/RMA_result_explorer_code')
|
||||||
|
year = '2015'
|
||||||
|
|
||||||
|
Ocean_gauges_folder = 'J:/Project/wrl2018064 Fisheries RAP/04_Working/05_Modelling/RMA/HEMIP/Global_HEMIP_Data/MHL_Gauge_Data/20200409_Recieved/Open_ocean/'
|
||||||
|
filenames = glob.glob(Ocean_gauges_folder + '*.csv')
|
||||||
|
filenames = [filenames[0],filenames[1], filenames[3]]
|
||||||
|
|
||||||
|
timestep = 0
|
||||||
|
for tgr_csv_name in filenames:
|
||||||
|
print (tgr_csv_name)
|
||||||
|
tgr_csv_name = filenames[2]
|
||||||
|
tgr_outname = Ocean_gauges_folder + os.path.basename(tgr_csv_name)[:-4] + '_2' + year
|
||||||
|
|
||||||
|
Full_df = pd.read_csv(tgr_csv_name ,header= 0, skiprows= 30, parse_dates = True)
|
||||||
|
Full_df.index = pd.to_datetime(Full_df.Date, format = '%d/%m/%Y') + pd.to_timedelta(Full_df.Time, unit='h')
|
||||||
|
Full_df = Full_df.iloc[:,[-2]]
|
||||||
|
Full_df.columns = ['WL[AHD]']
|
||||||
|
Full_df = Full_df.loc[(Full_df.index >= year + '-01-01 00:00:00') & (Full_df.index <= str(np.int(year)+1) + '-01-01 00:00:00')]
|
||||||
|
# str(df['2'][1500].astype(int))
|
||||||
|
|
||||||
|
# RMA2: create input file
|
||||||
|
fq = open(
|
||||||
|
os.path.join(Ocean_gauges_folder, tgr_outname + '.tgr'),
|
||||||
|
'w')
|
||||||
|
|
||||||
|
fq.write('TT MHL tide for ' + os.path.basename(tgr_csv_name)+ ' ' + year + '\n')
|
||||||
|
fq.write('{:<5}{:>3}{:>8}{:>8}\n'.format('CL', '', '2', year))
|
||||||
|
#fq.write('{:<5}{:>3}{:>8}{:>8}\n'.format('CL', '', int(df['3'][0]), int(df['4'][0])))
|
||||||
|
for i in range(1,len(Full_df),1):
|
||||||
|
# For each new element
|
||||||
|
fq.write('{:<5}{:>3}{:>8}{:>8}\n'.format('HD', str(np.int(Full_df.index[i-1].strftime('%j'))), str(np.round((np.float(Full_df.index[i-1].strftime('%M'))+ np.float(Full_df.index[i-1].strftime('%H'))*60) /60,2)), str(np.round(np.float(Full_df['WL[AHD]'][i-1]),3))))
|
||||||
|
fq.write('ENDDATA')
|
||||||
|
fq.close()
|
||||||
@ -0,0 +1,214 @@
|
|||||||
|
# -*- coding: utf-8 -*-
|
||||||
|
"""
|
||||||
|
Created on Mon Nov 25 10:56:21 2019
|
||||||
|
|
||||||
|
@author: z5025317
|
||||||
|
"""
|
||||||
|
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#Load packages
|
||||||
|
#==========================================================#
|
||||||
|
import numpy as np
|
||||||
|
import os
|
||||||
|
import pandas as pd
|
||||||
|
import glob
|
||||||
|
import matplotlib
|
||||||
|
import matplotlib.pyplot as plt
|
||||||
|
from datetime import datetime
|
||||||
|
from datetime import timedelta
|
||||||
|
import seaborn
|
||||||
|
matplotlib.style.use('ggplot')
|
||||||
|
#========================================================#
|
||||||
|
|
||||||
|
|
||||||
|
#========================================================#
|
||||||
|
#set input parameters and paths
|
||||||
|
#========================================================#
|
||||||
|
Gauges = [ 'Stockton', 'Raymond', 'Oakhampton', 'Paterson'] #name of all gauges or IDs in a given river
|
||||||
|
River = 'Clarence'
|
||||||
|
|
||||||
|
#name of plot scenario/experiment . This is a unique identifier for this particular scenario comparison
|
||||||
|
Plot_scenario = 'Clarence_gauge_analysis_V1'
|
||||||
|
|
||||||
|
#time frames for analysis
|
||||||
|
tideanalysis_day = '2006 06 07' # the time series plots will be centred around this day.
|
||||||
|
year = 2006
|
||||||
|
|
||||||
|
#set directories
|
||||||
|
Folder = 'C:/Users/z5025317/OneDrive - UNSW/WRL_Postdoc_Manual_Backup/WRL_Postdoc/Projects/Paper#2_HD_modeling/01_Data/Tides/CSV/' #needs to be adjusted - should be a folder with all the MHL data in individual CSV files
|
||||||
|
Out_Folder = 'C:/Users/z5025317/OneDrive - UNSW/WRL_Postdoc_Manual_Backup/WRL_Postdoc/Projects/Paper#2_HD_modeling/02_Analysis/Tides/' #needs to be adjusted
|
||||||
|
#========================================================#
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
#========================================================#
|
||||||
|
#laod MHL data and store in a single dataframe
|
||||||
|
#========================================================#
|
||||||
|
WL_df = pd.DataFrame()
|
||||||
|
for gauge in Gauges:
|
||||||
|
# gauge = 'Oyster'
|
||||||
|
print 'loading data for ' + gauge
|
||||||
|
CSVpath = glob.glob(Folder + '*' + gauge + '*' ) # will find the csv file corresponding to the gauge name or ID
|
||||||
|
print(CSVpath)
|
||||||
|
Full_df = pd.read_csv(CSVpath ,header= 0, skiprows= 30, parse_dates = True) #needs to be adjusted to fit the MHL format
|
||||||
|
#Full_df.index = pd.to_datetime(Full_df.Date, format = '%d/%m/%Y') + pd.to_timedelta(Full_df.Time, unit='h') #time series index may have to be adjusted, depending on the outcome of parse_dates
|
||||||
|
Full_df.index = pd.to_datetime(Full_df.Date, format = '%d/%m/%Y') + pd.to_timedelta(Full_df.Time, unit='h')
|
||||||
|
Full_df = Full_df.iloc[:,[-2]]
|
||||||
|
Full_df.columns = ['WL[AHD]']
|
||||||
|
Full_df = Full_df.loc[(Full_df.index >= year + '-01-01 00:00:00') & (Full_df.index <= str(np.int(year)+1) + '-01-01 00:00:00')]
|
||||||
|
Full_df = Full_df.loc[~Full_df.index.duplicated(keep='first')] #get rid of possible duplicate datetimes
|
||||||
|
WL_df = pd.concat([WL_df, Full_df], axis=1)
|
||||||
|
WL_df.columns = Gauges
|
||||||
|
#subset the data in time if desired (e.g. to a given year)
|
||||||
|
WL_df_1 = WL_df.loc[(WL_df.index >= '2017-01-10 00:00:00') & (WL_df.index <= '2017-01-18 00:00:00')]
|
||||||
|
#better
|
||||||
|
#WL_df_1 = WL_df.loc[(WL_df.index >= datetime.strptime(startdate , '%Y %m %d').date()) & (WL_df.index <= datetime.strptime(enddate , '%Y %m %d').date())] #may need to be adjusted
|
||||||
|
|
||||||
|
#export dataframe to CSV if desired
|
||||||
|
#export the pandas data frame as a CSV file within the output directory is desired
|
||||||
|
#WL_df.to_csv(Folder + 'data_combined.csv')
|
||||||
|
#========================================================#
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
#========================================================#
|
||||||
|
# Plot water level histogram at all gauges on a singel plot
|
||||||
|
#========================================================#
|
||||||
|
#full period density comparison all four gauges
|
||||||
|
png_out_name = Out_Folder + River + '_water level histograms.pdf'
|
||||||
|
fig = plt.figure(figsize=(40,18))
|
||||||
|
ax=plt.subplot(1,1,1)
|
||||||
|
plt.title('Hunter water level density comparison - Jan 2016- Feb 2020')
|
||||||
|
WL_df.iloc[:,[0,1,2,3]].plot.kde(xlim=(-1.5,1.5), ax=ax)
|
||||||
|
fig.tight_layout()
|
||||||
|
fig.savefig(png_out_name)
|
||||||
|
plt.close()
|
||||||
|
fig.tight_layout()
|
||||||
|
fig.savefig(png_out_name)
|
||||||
|
plt.close()
|
||||||
|
#========================================================#
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
#========================================================#
|
||||||
|
# Plot water level histogram at all gauges
|
||||||
|
#========================================================#
|
||||||
|
ylims = [-0.9,2.2]
|
||||||
|
#set plot parameters
|
||||||
|
ALPHA_figs = 1
|
||||||
|
font = {'family' : 'sans-serif',
|
||||||
|
'weight' : 'normal',
|
||||||
|
'size' : 6}
|
||||||
|
matplotlib.rc('font', **font)
|
||||||
|
|
||||||
|
#plot
|
||||||
|
i=1
|
||||||
|
png_out_name = Out_Folder + '/' + Plot_scenario + '/' + River + 'B_water level histogram and exceedance planes '+ startdate + '_' + enddate + '3.pdf'
|
||||||
|
fig = plt.figure(figsize=(len(Gauges)*4,8))
|
||||||
|
for Gauge in Gauges:
|
||||||
|
#Gauge = 'Yamba'
|
||||||
|
xlocation = 0.6
|
||||||
|
#full period density comparison for individual gauges overlaid by tidal planes
|
||||||
|
Wollow_13ExPr = np.nanpercentile(WL_df[Gauge],87)
|
||||||
|
Wollow_6p4ExPr = np.nanpercentile(WL_df[Gauge],93.6)
|
||||||
|
Wollow_1_3ExPr = np.nanpercentile(WL_df[Gauge],98.7)
|
||||||
|
Wollow_0p01ExPr = np.nanpercentile(WL_df[Gauge],99.99)
|
||||||
|
Wollow_50ExPr = np.nanpercentile(WL_df[Gauge],50)
|
||||||
|
ax=plt.subplot(4,1,i)
|
||||||
|
plt.title( Gauge + ' water level density comparison - Jan 2016- Feb 2020')
|
||||||
|
#WL_df[Gauge].plot.kde(xlim=(-0.5,1),vertical=True, lw=3, ax=ax)
|
||||||
|
seaborn.kdeplot(WL_df[Gauge], vertical=True, color='royalblue', lw=3, ax=ax)
|
||||||
|
|
||||||
|
plt.axhline(y=Wollow_13ExPr, color='firebrick', linestyle='--', lw=3, alpha=1)
|
||||||
|
plt.text( xlocation , (Wollow_13ExPr), '13% exceedance', ha='left', va='bottom')
|
||||||
|
|
||||||
|
plt.axhline(y=Wollow_6p4ExPr, color='orange', linestyle='--', lw=3, alpha=1)
|
||||||
|
plt.text(xlocation , (Wollow_6p4ExPr), '6.4% exceedance', ha='left', va='bottom')
|
||||||
|
|
||||||
|
plt.axhline(y=Wollow_1_3ExPr, color='yellow', linestyle='--', lw=3, alpha=1)
|
||||||
|
plt.text( xlocation ,Wollow_1_3ExPr , '1.3% exceedance', ha='left', va='bottom')
|
||||||
|
|
||||||
|
plt.axhline(y=Wollow_0p01ExPr, color='limegreen', linestyle='--', lw=3, alpha=1)
|
||||||
|
plt.text( xlocation , Wollow_0p01ExPr , '0.01% exceedance', ha='left', va='bottom')
|
||||||
|
|
||||||
|
plt.axhline(y=Wollow_50ExPr, color='cyan', linestyle='--', lw=3, alpha=1)
|
||||||
|
plt.text( xlocation , Wollow_50ExPr , '50% exceedance', ha='left', va='bottom')
|
||||||
|
|
||||||
|
plt.ylim(-1,1.7)
|
||||||
|
|
||||||
|
plt.xlabel("Probability/density")
|
||||||
|
plt.ylabel("Water level [m AHD]")
|
||||||
|
|
||||||
|
fig.tight_layout()
|
||||||
|
fig.savefig(png_out_name)
|
||||||
|
plt.close()
|
||||||
|
fig.tight_layout()
|
||||||
|
fig.savefig(png_out_name)
|
||||||
|
i=i+1
|
||||||
|
plt.close()
|
||||||
|
#========================================================#
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
#========================================================#
|
||||||
|
# Save exceedance planes to csv
|
||||||
|
#========================================================#
|
||||||
|
Summary={}
|
||||||
|
Summary['13% exceedance'] = Wollow_13ExPr
|
||||||
|
Summary['6.4% exceedance'] = Wollow_6p4ExPr
|
||||||
|
Summary['1.3% exceedance'] = Wollow_1_3ExPr
|
||||||
|
Summary['0.01% exceedance'] = Wollow_0p01ExPr
|
||||||
|
Summary['50% exceedance'] = Wollow_50ExPr
|
||||||
|
pdf1 = pd.DataFrame(Summary, index=[0])
|
||||||
|
pdf1.to_csv(os.path.join( Out_Folder + Gauge + '_entrance_stats.csv'))
|
||||||
|
#========================================================#
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
#========================================================#
|
||||||
|
# Plot water level time series at control points
|
||||||
|
#========================================================#
|
||||||
|
#set plot parameters
|
||||||
|
ALPHA_figs = 1
|
||||||
|
font = {'family' : 'sans-serif',
|
||||||
|
'weight' : 'normal',
|
||||||
|
'size' : 5}
|
||||||
|
matplotlib.rc('font', **font)
|
||||||
|
|
||||||
|
halfwindows = [1,2,5] #Days to add before and after central date chosen for analysis
|
||||||
|
for halfwindow in halfwindows:
|
||||||
|
png_out_name = Out_Folder + '/' + Plot_scenario + '/' +River+ 'water level time series '+ startdate + '_' + enddate + ' _window_of_' + str(halfwindow*2) +'_days.pdf'
|
||||||
|
fig = plt.figure(figsize=(10,len(Gauges)*3))
|
||||||
|
i=1
|
||||||
|
for Gauge in Gauges:
|
||||||
|
Gauge_only_df = WL_df.filter(regex=Gauge)
|
||||||
|
#Gauge_only_df_1 = Gauge_only_df.loc[(Gauge_only_df.index >= '2008-05-09 12:00:00') & (Gauge_only_df.index <= '2008-05-20 12:00:00')]
|
||||||
|
Gauge_only_df_1 = Gauge_only_df[datetime.strptime(tideanalysis_day , '%Y %m %d').date()- timedelta(days=halfwindow) : datetime.strptime(tideanalysis_day , '%Y %m %d').date() + timedelta(days=halfwindow) ]
|
||||||
|
ax=plt.subplot(len(Gauges),1,i)
|
||||||
|
plt.title('Tidal water levels at 4 locations in the ' + River +' Estuary')
|
||||||
|
ax.set_prop_cycle(color=['steelblue', 'coral', 'steelblue', 'deeppink'],linestyle=[ '-', '-','--','-'], lw=[1,1,1,2])
|
||||||
|
Gauge_only_df_1.iloc[:,[0,1,2]].plot( legend=False, ax=ax)
|
||||||
|
plt.axhline(y=0, color='slateblue', linestyle='--', lw=1, alpha=0.5)
|
||||||
|
#plt.axhline(y=0.9, color='tomato', linestyle='--', lw=1, alpha=0.5)
|
||||||
|
plt.ylim(ylims)
|
||||||
|
plt.ylabel("Water level [m AHD]")
|
||||||
|
plt.xlabel("Time")
|
||||||
|
ax.legend()
|
||||||
|
fig.tight_layout()
|
||||||
|
i=i+1
|
||||||
|
fig.savefig(png_out_name)
|
||||||
|
plt.close()
|
||||||
|
#========================================================#
|
||||||
|
# Plot water level histograms at control points
|
||||||
|
#========================================================#
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -0,0 +1,186 @@
|
|||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#Load packages
|
||||||
|
#==========================================================#
|
||||||
|
# Set working direcotry where python code is located and results are to be stored
|
||||||
|
import os
|
||||||
|
os.chdir('H:/WRL_Projects/Hunter_CC_Modeling/Code/RMA_result_explorer')
|
||||||
|
from py_rmatools_v02 import rma
|
||||||
|
import pandas as pd
|
||||||
|
import geopandas as gpd
|
||||||
|
import argparse
|
||||||
|
import glob
|
||||||
|
#==========================================================#
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#Input parameters
|
||||||
|
#==========================================================#
|
||||||
|
River = 'Clarence'
|
||||||
|
foldernames =['046_CLA_CAL_01' , 'basecase_2008'] #['TWD_HYD_CAL_05', 'TWD_HYD_CAL_06'] #'base_case_2005' #SLR_1m_2005
|
||||||
|
foldername = '046_CLA_CAL_01'
|
||||||
|
Fishnet_ID = 'FN1'
|
||||||
|
startyear=2008 #it's critical that this matches the year of the run since the code will overwrite the year from the rma file with this one
|
||||||
|
endyear=2008 #this is technically only needed when multiple years have been run (for which the code needs to be adusted below)
|
||||||
|
year=range(startyear, endyear+1)
|
||||||
|
#==========================================================#
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#Set paths to filelocations - largely automated
|
||||||
|
#==========================================================#
|
||||||
|
#load and refine node vs mesh shapefile to store the results of the statistics
|
||||||
|
Fishnet_path = glob.glob('J:/Project/wrl2018064 Fisheries RAP/04_Working/05_Modelling/RMA/HEMIP/Models/' + River + '/04_Results/Chainages/*' + Fishnet_ID + '*.shp')
|
||||||
|
Node_mesh = gpd.read_file(Fishnet_path[0])
|
||||||
|
Node_mesh = Node_mesh.loc[Node_mesh['Node'].notnull()]
|
||||||
|
Node_mesh = pd.DataFrame(Node_mesh)
|
||||||
|
Node_mesh = Node_mesh.reset_index()
|
||||||
|
#Node_mesh.index = Node_mesh['Field1']
|
||||||
|
#Node_mesh = Node_mesh.iloc[:,-4:]
|
||||||
|
#Node_mesh.columns = ['Node', 'X', 'Y', 'geometry']
|
||||||
|
node = Node_mesh['Node'].astype(int).values
|
||||||
|
|
||||||
|
run_directory = 'J:/Project/wrl2018064 Fisheries RAP/04_Working/05_Modelling/RMA/HEMIP/Models/' + River + '/03_Simulations/RAP_SLR/' + foldername +'/'
|
||||||
|
#set directory path for output files
|
||||||
|
output_directory = 'J:/Project/wrl2018064 Fisheries RAP/04_Working/05_Modelling/RMA/HEMIP/Models/' + River + '/04_Results/Output/'+ foldername + '_' + Fishnet_ID + '/'
|
||||||
|
#==========================================================#
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#100% automated part of the code doing the data extraction
|
||||||
|
#==========================================================#
|
||||||
|
f = os.path.basename(glob.glob(run_directory + '*'+ str(startyear) + '*.rma')[0])[:-4] #rma file name without .rma ending
|
||||||
|
|
||||||
|
if not os.path.exists(output_directory):
|
||||||
|
os.makedirs(output_directory)
|
||||||
|
print('-------------------------------------------')
|
||||||
|
print("output directory folder didn't exist and was generated")
|
||||||
|
print('-------------------------------------------')
|
||||||
|
|
||||||
|
time=[]
|
||||||
|
xvel=[]
|
||||||
|
yvel=[]
|
||||||
|
totvel=[]
|
||||||
|
elevation=[]
|
||||||
|
depth=[]
|
||||||
|
#
|
||||||
|
#==========================================================#
|
||||||
|
#exctract elevation
|
||||||
|
#==========================================================#
|
||||||
|
print('extracting RM2 results for' + f)
|
||||||
|
filename1= output_directory + f +'_elev.txt'
|
||||||
|
filename1= output_directory + foldername +'_elev'+ '_' + Fishnet_ID + '.txt'
|
||||||
|
print(filename1)
|
||||||
|
target = open(filename1, 'w')
|
||||||
|
target.write("Year Hour ")
|
||||||
|
for inode in node:
|
||||||
|
target.write("%i " % inode)
|
||||||
|
target.write('\n')
|
||||||
|
for jj in year:
|
||||||
|
f1=run_directory + f #+ '_%d' %jj
|
||||||
|
R=rma()
|
||||||
|
print(f1)
|
||||||
|
R.open(f1)
|
||||||
|
print (jj)
|
||||||
|
|
||||||
|
while R.next():
|
||||||
|
time.append(R.time)
|
||||||
|
target.write("%.0f %r " %(jj,R.time))
|
||||||
|
for inode in node:
|
||||||
|
target.write("%f " % R.elevation[inode])
|
||||||
|
target.write('\n')
|
||||||
|
|
||||||
|
#print (" Press any ENTER to exit")
|
||||||
|
target.close()
|
||||||
|
#f=input()
|
||||||
|
#==========================================================#
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#exctract depth
|
||||||
|
#==========================================================#
|
||||||
|
filename1= output_directory + f+'_depth.txt'
|
||||||
|
print(filename1)
|
||||||
|
target = open(filename1, 'w')
|
||||||
|
target.write("Year Hour ")
|
||||||
|
for inode in node:
|
||||||
|
target.write("%i " % inode)
|
||||||
|
target.write('\n')
|
||||||
|
for jj in year:
|
||||||
|
print(jj)
|
||||||
|
f1=run_directory + f + '_%d' %jj
|
||||||
|
R=rma()
|
||||||
|
print(f1)
|
||||||
|
R.open(f1)
|
||||||
|
print (jj)
|
||||||
|
|
||||||
|
while R.next():
|
||||||
|
time.append(R.time)
|
||||||
|
target.write("%.0f %r " %(jj,R.time))
|
||||||
|
for inode in node:
|
||||||
|
target.write("%f " % R.depth[inode])
|
||||||
|
target.write('\n')
|
||||||
|
|
||||||
|
#print (" Press any ENTER to exit")
|
||||||
|
target.close()
|
||||||
|
#f=input()
|
||||||
|
#==========================================================#
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#exctract xvel
|
||||||
|
#==========================================================#
|
||||||
|
filename1= output_directory + f+'_xvel.txt'
|
||||||
|
print(filename1)
|
||||||
|
target = open(filename1, 'w')
|
||||||
|
|
||||||
|
target.write("Year Hour ")
|
||||||
|
for inode in node:
|
||||||
|
target.write("%i " % inode)
|
||||||
|
target.write('\n')
|
||||||
|
print (filename1)
|
||||||
|
for jj in year:
|
||||||
|
f1=run_directory + f + '_%d' %jj
|
||||||
|
R=rma()
|
||||||
|
print(f1)
|
||||||
|
R.open(f1)
|
||||||
|
print (jj)
|
||||||
|
|
||||||
|
while R.next():
|
||||||
|
time.append(R.time)
|
||||||
|
target.write("%.0f %r " %(jj,R.time))
|
||||||
|
for inode in node:
|
||||||
|
target.write("%f " % R.xvel[inode])
|
||||||
|
target.write('\n')
|
||||||
|
#print (" Press any ENTER to exit")
|
||||||
|
target.close()
|
||||||
|
#f=input()
|
||||||
|
#==========================================================#
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#yvel
|
||||||
|
#==========================================================#
|
||||||
|
filename1= output_directory + f+'_yvel.txt'
|
||||||
|
print(filename1)
|
||||||
|
target = open(filename1, 'w')
|
||||||
|
|
||||||
|
target.write("Year Hour ")
|
||||||
|
for inode in node:
|
||||||
|
target.write("%i " % inode)
|
||||||
|
target.write('\n')
|
||||||
|
print (filename1)
|
||||||
|
for jj in year:
|
||||||
|
f1=run_directory + f + '_%d' %jj
|
||||||
|
R=rma()
|
||||||
|
print(f1)
|
||||||
|
R.open(f1)
|
||||||
|
print (jj)
|
||||||
|
|
||||||
|
while R.next():
|
||||||
|
time.append(R.time)
|
||||||
|
target.write("%.0f %r " %(jj,R.time))
|
||||||
|
for inode in node:
|
||||||
|
target.write("%f " % R.yvel[inode])
|
||||||
|
target.write('\n')
|
||||||
|
|
||||||
|
#print (" Press any ENTER to exit")
|
||||||
|
target.close()
|
||||||
|
#f=input()
|
||||||
|
#==========================================================#
|
||||||
@ -0,0 +1,232 @@
|
|||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#Load packages
|
||||||
|
#==========================================================#
|
||||||
|
# Set working direcotry where python code is located and results are to be stored
|
||||||
|
import os
|
||||||
|
os.chdir('J:/Project/wrl2018064 Fisheries RAP/04_Working/05_Modelling/RMA/HEMIP/RMA_result_explorer_code')
|
||||||
|
from py_rmatools_v02 import rma
|
||||||
|
import geopandas as gpd
|
||||||
|
import pandas as pd
|
||||||
|
import glob
|
||||||
|
from pyrma import pyrma
|
||||||
|
#==========================================================#
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#Input parameters
|
||||||
|
#==========================================================#
|
||||||
|
#set beginning and end years and corresponding scenario code
|
||||||
|
#River = 'Shoalhaven'
|
||||||
|
#foldernames = ['base_case_2005']# , 'SLR_1m_2005'] #['TWD_HYD_CAL_05', 'TWD_HYD_CAL_06'] #'base_case_2005' #SLR_1m_2005
|
||||||
|
#Order_ID = 'Core_order' #choose order column name
|
||||||
|
#
|
||||||
|
#startyear=2005 #it's critical that this matches the year of the run since the code will overwrite the year from the rma file with this one
|
||||||
|
#endyear=2005 #this is technically only needed when multiple years have been run (for which the code needs to be adusted below)
|
||||||
|
#year=range(startyear, endyear+1)
|
||||||
|
|
||||||
|
#set beginning and end years and corresponding scenario code
|
||||||
|
River = 'Clarence'
|
||||||
|
foldernames =['046_CLA_CAL_01' , 'basecase_2008'] #['TWD_HYD_CAL_05', 'TWD_HYD_CAL_06'] #'base_case_2005' #SLR_1m_2005
|
||||||
|
Order_ID = 'Core_ord_2' #choose order column name
|
||||||
|
|
||||||
|
startyear=2008 #it's critical that this matches the year of the run since the code will overwrite the year from the rma file with this one
|
||||||
|
endyear=2008 #this is technically only needed when multiple years have been run (for which the code needs to be adusted below)
|
||||||
|
year=range(startyear, endyear+1)
|
||||||
|
#==========================================================#
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#After here should be mostly automated
|
||||||
|
#==========================================================#
|
||||||
|
for foldername in foldernames:
|
||||||
|
#foldername = foldernames[0]
|
||||||
|
#set run directory where RMA results are located
|
||||||
|
run_directory = 'J:/Project/wrl2018064 Fisheries RAP/04_Working/05_Modelling/RMA/HEMIP/Models/' + River + '/03_Simulations/RAP_SLR/' + foldername +'/'
|
||||||
|
#set directory path for output files
|
||||||
|
output_directory = 'J:/Project/wrl2018064 Fisheries RAP/04_Working/05_Modelling/RMA/HEMIP/Models/' + River + '/04_Results/Output/'+ foldername + '_' + Order_ID + '/'
|
||||||
|
if not os.path.exists(output_directory):
|
||||||
|
os.makedirs(output_directory)
|
||||||
|
|
||||||
|
#load MHL gauge shapefile to store the results of the statistics
|
||||||
|
MHL_gauges_df = gpd.read_file('J:/Project/wrl2018064 Fisheries RAP/04_Working/05_Modelling/RMA/HEMIP/Global_Data/GIS/MHL_gauges_received_MGA56.shp')
|
||||||
|
MHL_gauges_df = MHL_gauges_df.loc[MHL_gauges_df['River'] == River]
|
||||||
|
MHL_gauges_df = MHL_gauges_df.loc[MHL_gauges_df[Order_ID].notnull()]
|
||||||
|
MHL_gauges_df = pd.DataFrame(MHL_gauges_df)
|
||||||
|
MHL_gauges_df = MHL_gauges_df.reset_index()
|
||||||
|
MHL_gauges_df['NrstNode'] = 0
|
||||||
|
|
||||||
|
# Load RMA mesh and find nearest node for each MHL gauge as basis for the data extraction
|
||||||
|
print('Reading RMA mesh file and finding the nearest node for the following XY locations of input points')
|
||||||
|
meshpath = glob.glob(run_directory + '*v2.rm1')
|
||||||
|
nodes, elements = pyrma.loadMesh(meshpath[0])
|
||||||
|
mesh = pd.DataFrame(elements, index=[0]).transpose()
|
||||||
|
mesh.columns = ['name']
|
||||||
|
mesh['centroid'] = [e.centroid for e in elements.values()]
|
||||||
|
mesh['nodeIDs'] = [e.nodes for e in elements.values()]
|
||||||
|
#trying to make it work for nodes rather than elements (not working yet)
|
||||||
|
# elements.values()[0].centroid
|
||||||
|
# nodedf['centroid'] =
|
||||||
|
# [e.location() for e in elements.values()]
|
||||||
|
# nodedf = pd.DataFrame(elements, index=[0]).transpose()
|
||||||
|
# nodes1 = pyrma.loadNodes(meshpath[0])
|
||||||
|
# nodes1.values()[0].location
|
||||||
|
# type(elements.values()[0])
|
||||||
|
# nodes.keys().location()
|
||||||
|
# elements.values()[0].nodes
|
||||||
|
# nodes.values().location()
|
||||||
|
# nodes.values()[0].location()
|
||||||
|
node = []
|
||||||
|
for i in range(0,len(MHL_gauges_df),1):
|
||||||
|
# Find nearest element in RMA mesh
|
||||||
|
x = MHL_gauges_df['Easting'][i]
|
||||||
|
y = MHL_gauges_df['Northing'][i]
|
||||||
|
print(x,y)
|
||||||
|
mesh['calc'] = [pyrma.point(x, y).dist(c) for c in mesh['centroid']]
|
||||||
|
#idx = mesh['calc'].idxmin()
|
||||||
|
#node.append(idx)
|
||||||
|
node.append(mesh['nodeIDs'][mesh['calc'].idxmin()][0].ID)
|
||||||
|
MHL_gauges_df['NrstNode'] = node
|
||||||
|
MHL_gauges_df.to_csv(output_directory + '_Gauges_with_nodes.csv')
|
||||||
|
#==========================================================#
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#100% automated part of the code doing the data extraction
|
||||||
|
#==========================================================#
|
||||||
|
#define rma file from which data will be extracted
|
||||||
|
f = os.path.basename(glob.glob(run_directory + '*'+ str(startyear) + '*.rma')[0])[:-4] #rma file name without .rma ending
|
||||||
|
|
||||||
|
#output_directory = 'J:/Project wrl2016032/NARCLIM_Raw_Data/Extracted'
|
||||||
|
if not os.path.exists(output_directory):
|
||||||
|
os.makedirs(output_directory)
|
||||||
|
print('-------------------------------------------')
|
||||||
|
print("output directory folder didn't exist and was generated")
|
||||||
|
print('-------------------------------------------')
|
||||||
|
|
||||||
|
time=[]
|
||||||
|
xvel=[]
|
||||||
|
yvel=[]
|
||||||
|
totvel=[]
|
||||||
|
elevation=[]
|
||||||
|
depth=[]
|
||||||
|
#
|
||||||
|
#==========================================================#
|
||||||
|
#exctract elevation
|
||||||
|
#==========================================================#
|
||||||
|
print('Extracting RM2 results for' + f)
|
||||||
|
filename1= output_directory + foldername +'_elev'+ '_' + Order_ID + '.txt'
|
||||||
|
print(filename1)
|
||||||
|
target = open(filename1, 'w')
|
||||||
|
target.write("Year Hour ")
|
||||||
|
for inode in node:
|
||||||
|
target.write("%i " % inode)
|
||||||
|
target.write('\n')
|
||||||
|
for jj in year:
|
||||||
|
f1=run_directory + f #+ '_%d' %jj
|
||||||
|
R=rma()
|
||||||
|
print(f1)
|
||||||
|
R.open(f1)
|
||||||
|
print (jj)
|
||||||
|
|
||||||
|
while R.next():
|
||||||
|
time.append(R.time)
|
||||||
|
target.write("%.0f %r " %(jj,R.time))
|
||||||
|
for inode in node:
|
||||||
|
target.write("%f " % R.elevation[inode])
|
||||||
|
target.write('\n')
|
||||||
|
|
||||||
|
#print (" Press any ENTER to exit")
|
||||||
|
target.close()
|
||||||
|
#f=input()
|
||||||
|
#==========================================================#
|
||||||
|
|
||||||
|
# #==========================================================#
|
||||||
|
# #exctract depth
|
||||||
|
# #==========================================================#
|
||||||
|
# filename1= output_directory + foldername+'_depth'+ '_' + Order_ID + '.txt'
|
||||||
|
# print(filename1)
|
||||||
|
# target = open(filename1, 'w')
|
||||||
|
# target.write("Year Hour ")
|
||||||
|
# for inode in node:
|
||||||
|
# target.write("%i " % inode)
|
||||||
|
# target.write('\n')
|
||||||
|
# for jj in year:
|
||||||
|
# print(jj)
|
||||||
|
# f1=run_directory + f #+ '_%d' %jj
|
||||||
|
# R=rma()
|
||||||
|
# print(f1)
|
||||||
|
# R.open(f1)
|
||||||
|
# print (jj)
|
||||||
|
#
|
||||||
|
# while R.next():
|
||||||
|
# time.append(R.time)
|
||||||
|
# target.write("%.0f %r " %(jj,R.time))
|
||||||
|
# for inode in node:
|
||||||
|
# target.write("%f " % R.depth[inode])
|
||||||
|
# target.write('\n')
|
||||||
|
#
|
||||||
|
# #print (" Press any ENTER to exit")
|
||||||
|
# target.close()
|
||||||
|
# #f=input()
|
||||||
|
# #==========================================================#
|
||||||
|
|
||||||
|
# #==========================================================#
|
||||||
|
# #exctract xvel
|
||||||
|
# #==========================================================#
|
||||||
|
# filename1= output_directory + foldername+'_xvel'+ '_' + Order_ID + '.txt'
|
||||||
|
# print(filename1)
|
||||||
|
# target = open(filename1, 'w')
|
||||||
|
#
|
||||||
|
# target.write("Year Hour ")
|
||||||
|
# for inode in node:
|
||||||
|
# target.write("%i " % inode)
|
||||||
|
# target.write('\n')
|
||||||
|
# print (filename1)
|
||||||
|
# for jj in year:
|
||||||
|
# f1=run_directory + f #+ '_%d' %jj
|
||||||
|
# R=rma()
|
||||||
|
# print(f1)
|
||||||
|
# R.open(f1)
|
||||||
|
# print (jj)
|
||||||
|
#
|
||||||
|
# while R.next():
|
||||||
|
# time.append(R.time)
|
||||||
|
# target.write("%.0f %r " %(jj,R.time))
|
||||||
|
# for inode in node:
|
||||||
|
# target.write("%f " % R.xvel[inode])
|
||||||
|
# target.write('\n')
|
||||||
|
# #print (" Press any ENTER to exit")
|
||||||
|
# target.close()
|
||||||
|
# #f=input()
|
||||||
|
# #==========================================================#
|
||||||
|
#
|
||||||
|
# #==========================================================#
|
||||||
|
# #yvel
|
||||||
|
# #==========================================================#
|
||||||
|
# filename1= output_directory + foldername+'_yvel'+ '_' + Order_ID + '.txt'
|
||||||
|
# print(filename1)
|
||||||
|
# target = open(filename1, 'w')
|
||||||
|
#
|
||||||
|
# target.write("Year Hour ")
|
||||||
|
# for inode in node:
|
||||||
|
# target.write("%i " % inode)
|
||||||
|
# target.write('\n')
|
||||||
|
# print (filename1)
|
||||||
|
# for jj in year:
|
||||||
|
# f1=run_directory + f #+ '_%d' %jj
|
||||||
|
# R=rma()
|
||||||
|
# print(f1)
|
||||||
|
# R.open(f1)
|
||||||
|
# print (jj)
|
||||||
|
#
|
||||||
|
# while R.next():
|
||||||
|
# time.append(R.time)
|
||||||
|
# target.write("%.0f %r " %(jj,R.time))
|
||||||
|
# for inode in node:
|
||||||
|
# target.write("%f " % R.yvel[inode])
|
||||||
|
# target.write('\n')
|
||||||
|
#
|
||||||
|
# #print (" Press any ENTER to exit")
|
||||||
|
# target.close()
|
||||||
|
# #f=input()
|
||||||
|
# #==========================================================#
|
||||||
@ -0,0 +1,209 @@
|
|||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#Load packages
|
||||||
|
#==========================================================#
|
||||||
|
# Set working direcotry where python code is located and results are to be stored
|
||||||
|
import os
|
||||||
|
os.chdir('J:/Project/wrl2018064 Fisheries RAP/04_Working/05_Modelling/RMA/HEMIP/RMA_result_explorer_code')
|
||||||
|
from py_rmatools_v02 import rma
|
||||||
|
import geopandas as gpd
|
||||||
|
import pandas as pd
|
||||||
|
import glob
|
||||||
|
from pyrma import pyrma
|
||||||
|
#==========================================================#
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#Input parameters
|
||||||
|
#==========================================================#
|
||||||
|
#set beginning and end years and corresponding scenario code
|
||||||
|
River = 'Tweed'
|
||||||
|
foldernames =['TWD_HYD_CAL_03','TWD_HYD_CAL_04' , 'TWD_HYD_CAL_05', 'TWD_HYD_CAL_06'] #'base_case_2005' #SLR_1m_2005
|
||||||
|
Order_ID = 'Core_order' #choose order column name
|
||||||
|
|
||||||
|
startyear=2017 #it's critical that this matches the year of the run since the code will overwrite the year from the rma file with this one
|
||||||
|
endyear=2017 #this is technically only needed when multiple years have been run (for which the code needs to be adusted below)
|
||||||
|
year=range(startyear, endyear+1)
|
||||||
|
#==========================================================#
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#After here should be mostly automated
|
||||||
|
#==========================================================#
|
||||||
|
for foldername in foldernames:
|
||||||
|
#set run directory where RMA results are located
|
||||||
|
run_directory = 'J:/Project/wrl2018064 Fisheries RAP/04_Working/05_Modelling/RMA/HEMIP/Models/' + River + '/03_Simulations/RAP_SLR/' + foldername +'/'
|
||||||
|
#set directory path for output files
|
||||||
|
output_directory = 'J:/Project/wrl2018064 Fisheries RAP/04_Working/05_Modelling/RMA/HEMIP/Models/' + River + '/04_Results/Output/'+ foldername + '_' + Order_ID + '/'
|
||||||
|
if not os.path.exists(output_directory):
|
||||||
|
os.makedirs(output_directory)
|
||||||
|
|
||||||
|
#load MHL gauge shapefile to store the results of the statistics
|
||||||
|
MHL_gauges_df = gpd.read_file('J:/Project/wrl2018064 Fisheries RAP/04_Working/05_Modelling/RMA/HEMIP/Global_Data/GIS/MHL_gauges_received_MGA56.shp')
|
||||||
|
MHL_gauges_df = MHL_gauges_df.loc[MHL_gauges_df['River'] == River]
|
||||||
|
MHL_gauges_df = MHL_gauges_df.loc[MHL_gauges_df[Order_ID].notnull()]
|
||||||
|
MHL_gauges_df = pd.DataFrame(MHL_gauges_df )
|
||||||
|
MHL_gauges_df = MHL_gauges_df.reset_index()
|
||||||
|
MHL_gauges_df['NrstNode'] = 0
|
||||||
|
|
||||||
|
# Load RMA mesh and find nearest node for each MHL gauge as basis for the data extraction
|
||||||
|
print('Reading RMA mesh file and finding the nearest node for the following XY locations')
|
||||||
|
meshpath = glob.glob(run_directory + '*.rm1')
|
||||||
|
nodes, elements = pyrma.loadMesh(meshpath[0])
|
||||||
|
mesh = pd.DataFrame(elements, index=[0]).transpose()
|
||||||
|
mesh.columns = ['name']
|
||||||
|
mesh['centroid'] = [e.centroid for e in elements.values()]
|
||||||
|
node = []
|
||||||
|
for i in range(0,len(MHL_gauges_df),1):
|
||||||
|
# Find nearest element in RMA mesh
|
||||||
|
x = MHL_gauges_df['Easting'][i]
|
||||||
|
y = MHL_gauges_df['Northing'][i]
|
||||||
|
print(x,y)
|
||||||
|
mesh['calc'] = [pyrma.point(x, y).dist(c) for c in mesh['centroid']]
|
||||||
|
idx = mesh['calc'].idxmin()
|
||||||
|
node.append(idx)
|
||||||
|
|
||||||
|
MHL_gauges_df['NrstNode'] = node
|
||||||
|
MHL_gauges_df.to_csv(output_directory + '_Gauges_with_nodes.csv')
|
||||||
|
#==========================================================#
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#100% automated part of the code doing the data extraction
|
||||||
|
#==========================================================#
|
||||||
|
#define rma file from which data will be extracted
|
||||||
|
f = os.path.basename(glob.glob(run_directory + '*'+ str(startyear) + '*.rma')[0])[:-4] #rma file name without .rma ending
|
||||||
|
|
||||||
|
#output_directory = 'J:/Project wrl2016032/NARCLIM_Raw_Data/Extracted'
|
||||||
|
if not os.path.exists(output_directory):
|
||||||
|
os.makedirs(output_directory)
|
||||||
|
print('-------------------------------------------')
|
||||||
|
print("output directory folder didn't exist and was generated")
|
||||||
|
print('-------------------------------------------')
|
||||||
|
|
||||||
|
time=[]
|
||||||
|
xvel=[]
|
||||||
|
yvel=[]
|
||||||
|
totvel=[]
|
||||||
|
elevation=[]
|
||||||
|
depth=[]
|
||||||
|
#
|
||||||
|
#==========================================================#
|
||||||
|
#exctract elevation
|
||||||
|
#==========================================================#
|
||||||
|
print('Extracting RM2 results for' + f)
|
||||||
|
filename1= output_directory + foldername +'_elev'+ '_' + Order_ID + '.txt'
|
||||||
|
print(filename1)
|
||||||
|
target = open(filename1, 'w')
|
||||||
|
target.write("Year Hour ")
|
||||||
|
for inode in node:
|
||||||
|
target.write("%i " % inode)
|
||||||
|
target.write('\n')
|
||||||
|
for jj in year:
|
||||||
|
f1=run_directory + f #+ '_%d' %jj
|
||||||
|
R=rma()
|
||||||
|
print(f1)
|
||||||
|
R.open(f1)
|
||||||
|
print (jj)
|
||||||
|
|
||||||
|
while R.next():
|
||||||
|
time.append(R.time)
|
||||||
|
target.write("%.0f %r " %(jj,R.time))
|
||||||
|
for inode in node:
|
||||||
|
target.write("%f " % R.elevation[inode])
|
||||||
|
target.write('\n')
|
||||||
|
|
||||||
|
#print (" Press any ENTER to exit")
|
||||||
|
target.close()
|
||||||
|
#f=input()
|
||||||
|
#==========================================================#
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#exctract depth
|
||||||
|
#==========================================================#
|
||||||
|
filename1= output_directory + foldername+'_depth'+ '_' + Order_ID + '.txt'
|
||||||
|
print(filename1)
|
||||||
|
target = open(filename1, 'w')
|
||||||
|
target.write("Year Hour ")
|
||||||
|
for inode in node:
|
||||||
|
target.write("%i " % inode)
|
||||||
|
target.write('\n')
|
||||||
|
for jj in year:
|
||||||
|
print(jj)
|
||||||
|
f1=run_directory + f #+ '_%d' %jj
|
||||||
|
R=rma()
|
||||||
|
print(f1)
|
||||||
|
R.open(f1)
|
||||||
|
print (jj)
|
||||||
|
|
||||||
|
while R.next():
|
||||||
|
time.append(R.time)
|
||||||
|
target.write("%.0f %r " %(jj,R.time))
|
||||||
|
for inode in node:
|
||||||
|
target.write("%f " % R.depth[inode])
|
||||||
|
target.write('\n')
|
||||||
|
|
||||||
|
#print (" Press any ENTER to exit")
|
||||||
|
target.close()
|
||||||
|
#f=input()
|
||||||
|
#==========================================================#
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#exctract xvel
|
||||||
|
#==========================================================#
|
||||||
|
filename1= output_directory + foldername+'_xvel'+ '_' + Order_ID + '.txt'
|
||||||
|
print(filename1)
|
||||||
|
target = open(filename1, 'w')
|
||||||
|
|
||||||
|
target.write("Year Hour ")
|
||||||
|
for inode in node:
|
||||||
|
target.write("%i " % inode)
|
||||||
|
target.write('\n')
|
||||||
|
print (filename1)
|
||||||
|
for jj in year:
|
||||||
|
f1=run_directory + f #+ '_%d' %jj
|
||||||
|
R=rma()
|
||||||
|
print(f1)
|
||||||
|
R.open(f1)
|
||||||
|
print (jj)
|
||||||
|
|
||||||
|
while R.next():
|
||||||
|
time.append(R.time)
|
||||||
|
target.write("%.0f %r " %(jj,R.time))
|
||||||
|
for inode in node:
|
||||||
|
target.write("%f " % R.xvel[inode])
|
||||||
|
target.write('\n')
|
||||||
|
#print (" Press any ENTER to exit")
|
||||||
|
target.close()
|
||||||
|
#f=input()
|
||||||
|
#==========================================================#
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#yvel
|
||||||
|
#==========================================================#
|
||||||
|
filename1= output_directory + foldername+'_yvel'+ '_' + Order_ID + '.txt'
|
||||||
|
print(filename1)
|
||||||
|
target = open(filename1, 'w')
|
||||||
|
|
||||||
|
target.write("Year Hour ")
|
||||||
|
for inode in node:
|
||||||
|
target.write("%i " % inode)
|
||||||
|
target.write('\n')
|
||||||
|
print (filename1)
|
||||||
|
for jj in year:
|
||||||
|
f1=run_directory + f #+ '_%d' %jj
|
||||||
|
R=rma()
|
||||||
|
print(f1)
|
||||||
|
R.open(f1)
|
||||||
|
print (jj)
|
||||||
|
|
||||||
|
while R.next():
|
||||||
|
time.append(R.time)
|
||||||
|
target.write("%.0f %r " %(jj,R.time))
|
||||||
|
for inode in node:
|
||||||
|
target.write("%f " % R.yvel[inode])
|
||||||
|
target.write('\n')
|
||||||
|
|
||||||
|
#print (" Press any ENTER to exit")
|
||||||
|
target.close()
|
||||||
|
#f=input()
|
||||||
|
#==========================================================#
|
||||||
@ -0,0 +1,392 @@
|
|||||||
|
|
||||||
|
# coding: utf-8
|
||||||
|
|
||||||
|
# In[64]:
|
||||||
|
|
||||||
|
# Set working direcotry where python code is located and results are to be stored
|
||||||
|
import os
|
||||||
|
os.chdir('J:/Project/wrl2018064 Fisheries RAP/04_Working/05_Modelling/RMA/HEMIP/RMA_result_explorer_code')
|
||||||
|
|
||||||
|
import struct
|
||||||
|
import matplotlib.pyplot as plt
|
||||||
|
import math
|
||||||
|
from py_rmatools import rma
|
||||||
|
import glob
|
||||||
|
|
||||||
|
get_ipython().magic('matplotlib qt')
|
||||||
|
plt.rcParams.update({'figure.max_open_warning': 0})
|
||||||
|
|
||||||
|
|
||||||
|
River ='Tweed' #'Clarence'
|
||||||
|
foldername ='TWD_HYD_CAL_28' #'046_CLA_CAL_01'
|
||||||
|
run_directory = 'J:/Project/wrl2018064 Fisheries RAP/04_Working/05_Modelling/RMA/HEMIP/Models/' + River + '/03_Simulations/RAP_SLR/' + foldername +'/'
|
||||||
|
#set directory path for output files
|
||||||
|
output_directory = 'J:/Project/wrl2018064 Fisheries RAP/04_Working/05_Modelling/RMA/HEMIP/Models/' + River + '/04_Results/Output/'+ foldername + '_SERAPHIN/'
|
||||||
|
if not os.path.exists(output_directory):
|
||||||
|
os.makedirs(output_directory)
|
||||||
|
|
||||||
|
|
||||||
|
# In[65]:
|
||||||
|
meshpath = glob.glob(run_directory + '*.rm1')
|
||||||
|
meshFilename = meshpath[0]
|
||||||
|
#meshFilename = run_directory + 'woolo_v8.rm1'
|
||||||
|
channelWidth = 100
|
||||||
|
|
||||||
|
#rmapath = glob.glob(run_directory + '*.rma')
|
||||||
|
RMAfilename = meshpath[0]
|
||||||
|
RMAfilename = run_directory + 'Tweed_2017.rma' #'yamba_iluka_2008_044.rma'
|
||||||
|
|
||||||
|
#If RMA11
|
||||||
|
constNum = [0]
|
||||||
|
|
||||||
|
os.chdir(run_directory)
|
||||||
|
|
||||||
|
# In[66]:
|
||||||
|
def isElementOneD(nodelist):
|
||||||
|
if len(nodelist) == 2:
|
||||||
|
return True
|
||||||
|
return False
|
||||||
|
|
||||||
|
def isElementSquare(nodelist):
|
||||||
|
if len(nodelist) == 4:
|
||||||
|
return True
|
||||||
|
return False
|
||||||
|
|
||||||
|
def square2Triangle(ElementNum):
|
||||||
|
nodelist = ElementDict[ElementNum]
|
||||||
|
if isElementSquare(nodelist):
|
||||||
|
ElementDict[ElementNum] = [nodelist[0], nodelist[1], nodelist[2]]
|
||||||
|
ElementList.append(max(ElementList) + 1)
|
||||||
|
ElementDict[ElementList[-1]]= [nodelist[0], nodelist[2], nodelist[3]]
|
||||||
|
|
||||||
|
def oneD2triangle(ElementNum):
|
||||||
|
if isElementOneD(ElementDict[ElementNum]):
|
||||||
|
nAe = ElementDict[ElementNum][0] #nAe Node A existing
|
||||||
|
nBe = ElementDict[ElementNum][1]
|
||||||
|
|
||||||
|
if not nAe in node1Dduplicate: node1Dduplicate[nAe] = []
|
||||||
|
if not nBe in node1Dduplicate: node1Dduplicate[nBe] = []
|
||||||
|
|
||||||
|
xA = nodeDict[nAe][0]
|
||||||
|
xB = nodeDict[nBe][0]
|
||||||
|
yA = nodeDict[nAe][1]
|
||||||
|
yB = nodeDict[nBe][1]
|
||||||
|
|
||||||
|
normalVec = [-(yB - yA),(xB - xA)]
|
||||||
|
dist = math.sqrt(normalVec[0]**2 + normalVec[1]**2)
|
||||||
|
normalVec[0] = normalVec[0] / dist
|
||||||
|
normalVec[1] = normalVec[1] / dist
|
||||||
|
xA2 = xA + channelWidth * normalVec[0]
|
||||||
|
xB2 = xB + channelWidth * normalVec[0]
|
||||||
|
yA2 = yA + channelWidth * normalVec[1]
|
||||||
|
yB2 = yB + channelWidth * normalVec[1]
|
||||||
|
|
||||||
|
|
||||||
|
nA = max(NodeList) + 1
|
||||||
|
nB = max(NodeList) + 2
|
||||||
|
|
||||||
|
node1Dduplicate[nAe].append(nA)
|
||||||
|
node1Dduplicate[nBe].append(nB)
|
||||||
|
|
||||||
|
node2nodevalue[nA] = nAe
|
||||||
|
node2nodevalue[nB] = nBe
|
||||||
|
|
||||||
|
|
||||||
|
NodeList.append(nA)
|
||||||
|
NodeList.append(nB)
|
||||||
|
nodeDict[nA] = [xA2, yA2, -1.01]
|
||||||
|
nodeDict[nB] = [xB2, yB2, -1.01]
|
||||||
|
|
||||||
|
newEle = max(ElementList) + 1
|
||||||
|
ElementList .append(newEle)
|
||||||
|
ElementDict[ElementNum] = [nAe, nA, nBe]
|
||||||
|
ElementDict[newEle] = [nA, nB, nBe]
|
||||||
|
|
||||||
|
def RMA11toSerafin():
|
||||||
|
f = open('{}.slf'.format(RMAfilename), 'wb')
|
||||||
|
|
||||||
|
f.write(struct.pack(">l",80))
|
||||||
|
str='{0: >80}'.format('SERAFIN ')
|
||||||
|
f.write(str.encode('ascii'))
|
||||||
|
f.write(struct.pack(">l",80))
|
||||||
|
|
||||||
|
f.write(struct.pack(">l",8))
|
||||||
|
f.write(struct.pack(">l",len(constNum)))
|
||||||
|
f.write(struct.pack(">l",0))
|
||||||
|
f.write(struct.pack(">l",8))
|
||||||
|
|
||||||
|
for c in constName:
|
||||||
|
f.write(struct.pack(">l",32))
|
||||||
|
str='{0: <32}'.format(c)
|
||||||
|
f.write(str.encode('ascii'))
|
||||||
|
f.write(struct.pack(">l",32))
|
||||||
|
|
||||||
|
|
||||||
|
f.write(struct.pack(">l",40))
|
||||||
|
f.write(struct.pack(">l",1))
|
||||||
|
f.write(struct.pack(">l",0))
|
||||||
|
f.write(struct.pack(">l",0))
|
||||||
|
f.write(struct.pack(">l",0))
|
||||||
|
f.write(struct.pack(">l",0))
|
||||||
|
f.write(struct.pack(">l",0))
|
||||||
|
f.write(struct.pack(">l",0))
|
||||||
|
f.write(struct.pack(">l",0))
|
||||||
|
f.write(struct.pack(">l",0))
|
||||||
|
f.write(struct.pack(">l",1))
|
||||||
|
f.write(struct.pack(">l",40))
|
||||||
|
|
||||||
|
f.write(struct.pack(">l",24))
|
||||||
|
f.write(struct.pack(">l",R.year))
|
||||||
|
f.write(struct.pack(">l",1))
|
||||||
|
f.write(struct.pack(">l",1))
|
||||||
|
f.write(struct.pack(">l",0))
|
||||||
|
f.write(struct.pack(">l",0))
|
||||||
|
f.write(struct.pack(">l",0))
|
||||||
|
f.write(struct.pack(">l",24))
|
||||||
|
|
||||||
|
f.write(struct.pack(">l",16))
|
||||||
|
f.write(struct.pack(">l",len(ElementList)))
|
||||||
|
f.write(struct.pack(">l",len(NodeList)))
|
||||||
|
f.write(struct.pack(">l",3))
|
||||||
|
f.write(struct.pack(">l",1))
|
||||||
|
f.write(struct.pack(">l",16))
|
||||||
|
|
||||||
|
|
||||||
|
f.write(struct.pack(">l",len(ElementList)*3*4))
|
||||||
|
for el in ElementList:
|
||||||
|
for nd in ElementDict[el]:
|
||||||
|
f.write(struct.pack(">l",nodeOrdered[nd]))
|
||||||
|
f.write(struct.pack(">l",len(ElementList)*3*4))
|
||||||
|
|
||||||
|
f.write(struct.pack(">l",len(NodeList)))
|
||||||
|
for i in range(0,len(NodeList)):
|
||||||
|
f.write(struct.pack(">l",0))
|
||||||
|
f.write(struct.pack(">l",len(NodeList)))
|
||||||
|
|
||||||
|
f.write(struct.pack(">l",len(NodeList)*4))
|
||||||
|
for key, value in nodeDict.items():
|
||||||
|
f.write(struct.pack(">f",value[0]))
|
||||||
|
f.write(struct.pack(">l",len(NodeList)*4))
|
||||||
|
|
||||||
|
f.write(struct.pack(">l",len(NodeList)*4))
|
||||||
|
for key, value in nodeDict.items():
|
||||||
|
f.write(struct.pack(">f",value[1]))
|
||||||
|
f.write(struct.pack(">l",len(NodeList)*4))
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
while R.next():
|
||||||
|
#for i in range(3):
|
||||||
|
f.write(struct.pack(">l",4))
|
||||||
|
f.write(struct.pack(">f",R.time * 3600))
|
||||||
|
f.write(struct.pack(">l",4))
|
||||||
|
|
||||||
|
for c in constNum:
|
||||||
|
f.write(struct.pack(">l",len(NodeList)*4))
|
||||||
|
for key, value in nodeDict.items():
|
||||||
|
if key in node2nodevalue.keys():
|
||||||
|
f.write(struct.pack(">f",R.constit[c][node2nodevalue[key]]))
|
||||||
|
else:
|
||||||
|
f.write(struct.pack(">f",R.constit[c][key]))
|
||||||
|
|
||||||
|
f.write(struct.pack(">l",len(NodeList)*4))
|
||||||
|
|
||||||
|
R.next()
|
||||||
|
|
||||||
|
f.close()
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
def RMA2toSerafin():
|
||||||
|
f = open('{}.slf'.format(RMAfilename), 'wb')
|
||||||
|
|
||||||
|
f.write(struct.pack(">l",80))
|
||||||
|
str='{0: >80}'.format('SERAFIN ')
|
||||||
|
f.write(str.encode('ascii'))
|
||||||
|
f.write(struct.pack(">l",80))
|
||||||
|
|
||||||
|
f.write(struct.pack(">l",8))
|
||||||
|
f.write(struct.pack(">l",len(constName)))
|
||||||
|
f.write(struct.pack(">l",0))
|
||||||
|
f.write(struct.pack(">l",8))
|
||||||
|
|
||||||
|
for c in constName:
|
||||||
|
f.write(struct.pack(">l",32))
|
||||||
|
str='{0: <32}'.format(c)
|
||||||
|
f.write(str.encode('ascii'))
|
||||||
|
f.write(struct.pack(">l",32))
|
||||||
|
|
||||||
|
|
||||||
|
f.write(struct.pack(">l",40))
|
||||||
|
f.write(struct.pack(">l",1))
|
||||||
|
f.write(struct.pack(">l",0))
|
||||||
|
f.write(struct.pack(">l",0))
|
||||||
|
f.write(struct.pack(">l",0))
|
||||||
|
f.write(struct.pack(">l",0))
|
||||||
|
f.write(struct.pack(">l",0))
|
||||||
|
f.write(struct.pack(">l",0))
|
||||||
|
f.write(struct.pack(">l",0))
|
||||||
|
f.write(struct.pack(">l",0))
|
||||||
|
f.write(struct.pack(">l",1))
|
||||||
|
f.write(struct.pack(">l",40))
|
||||||
|
|
||||||
|
f.write(struct.pack(">l",24))
|
||||||
|
f.write(struct.pack(">l",R.year))
|
||||||
|
f.write(struct.pack(">l",1))
|
||||||
|
f.write(struct.pack(">l",1))
|
||||||
|
f.write(struct.pack(">l",0))
|
||||||
|
f.write(struct.pack(">l",0))
|
||||||
|
f.write(struct.pack(">l",0))
|
||||||
|
f.write(struct.pack(">l",24))
|
||||||
|
|
||||||
|
f.write(struct.pack(">l",16))
|
||||||
|
f.write(struct.pack(">l",len(ElementList)))
|
||||||
|
f.write(struct.pack(">l",len(NodeList)))
|
||||||
|
f.write(struct.pack(">l",3))
|
||||||
|
f.write(struct.pack(">l",1))
|
||||||
|
f.write(struct.pack(">l",16))
|
||||||
|
|
||||||
|
|
||||||
|
f.write(struct.pack(">l",len(ElementList)*3*4))
|
||||||
|
for el in ElementList:
|
||||||
|
for nd in ElementDict[el]:
|
||||||
|
f.write(struct.pack(">l",nodeOrdered[nd]))
|
||||||
|
f.write(struct.pack(">l",len(ElementList)*3*4))
|
||||||
|
|
||||||
|
f.write(struct.pack(">l",len(NodeList)))
|
||||||
|
for i in range(0,len(NodeList)):
|
||||||
|
f.write(struct.pack(">l",0))
|
||||||
|
f.write(struct.pack(">l",len(NodeList)))
|
||||||
|
|
||||||
|
f.write(struct.pack(">l",len(NodeList)*4))
|
||||||
|
for key, value in nodeDict.items():
|
||||||
|
f.write(struct.pack(">f",value[0]))
|
||||||
|
f.write(struct.pack(">l",len(NodeList)*4))
|
||||||
|
|
||||||
|
f.write(struct.pack(">l",len(NodeList)*4))
|
||||||
|
for key, value in nodeDict.items():
|
||||||
|
f.write(struct.pack(">f",value[1]))
|
||||||
|
f.write(struct.pack(">l",len(NodeList)*4))
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
while R.next():
|
||||||
|
|
||||||
|
f.write(struct.pack(">l",4))
|
||||||
|
f.write(struct.pack(">f",R.time * 3600))
|
||||||
|
f.write(struct.pack(">l",4))
|
||||||
|
|
||||||
|
|
||||||
|
f.write(struct.pack(">l",len(NodeList)*4))
|
||||||
|
for key, value in nodeDict.items():
|
||||||
|
if key in node2nodevalue.keys():
|
||||||
|
f.write(struct.pack(">f",R.xvel[node2nodevalue[key]]))
|
||||||
|
else:
|
||||||
|
f.write(struct.pack(">f",R.xvel[key]))
|
||||||
|
f.write(struct.pack(">l",len(NodeList)*4))
|
||||||
|
|
||||||
|
f.write(struct.pack(">l",len(NodeList)*4))
|
||||||
|
for key, value in nodeDict.items():
|
||||||
|
if key in node2nodevalue.keys():
|
||||||
|
f.write(struct.pack(">f",R.yvel[node2nodevalue[key]]))
|
||||||
|
else:
|
||||||
|
f.write(struct.pack(">f",R.yvel[key]))
|
||||||
|
f.write(struct.pack(">l",len(NodeList)*4))
|
||||||
|
|
||||||
|
f.write(struct.pack(">l",len(NodeList)*4))
|
||||||
|
for key, value in nodeDict.items():
|
||||||
|
if key in node2nodevalue.keys():
|
||||||
|
f.write(struct.pack(">f",R.depth[node2nodevalue[key]]))
|
||||||
|
else:
|
||||||
|
f.write(struct.pack(">f",R.depth[key]))
|
||||||
|
f.write(struct.pack(">l",len(NodeList)*4))
|
||||||
|
|
||||||
|
f.write(struct.pack(">l",len(NodeList)*4))
|
||||||
|
for key, value in nodeDict.items():
|
||||||
|
if key in node2nodevalue.keys():
|
||||||
|
f.write(struct.pack(">f",R.elevation[node2nodevalue[key]]))
|
||||||
|
else:
|
||||||
|
f.write(struct.pack(">f",R.elevation[key]))
|
||||||
|
f.write(struct.pack(">l",len(NodeList)*4))
|
||||||
|
|
||||||
|
|
||||||
|
R.next()
|
||||||
|
|
||||||
|
f.close()
|
||||||
|
|
||||||
|
|
||||||
|
# In[67]:
|
||||||
|
|
||||||
|
#Read mesh file and extract node (except mid node) and elements - plus convert 1D element to 2D for vizualisation
|
||||||
|
NodeList = []
|
||||||
|
ElementList = []
|
||||||
|
ElementDict = {}
|
||||||
|
nodeDict = {}
|
||||||
|
node1Dduplicate = {} #Original Number: List of Duplicates
|
||||||
|
node2nodevalue = {} #link between the node number and the node value to use
|
||||||
|
#(e.g. if node 10 is a 1D node: 10 is not duplicate so {1:1},
|
||||||
|
#but node 2050 (duplicate of 10) (1D to 2D) the value of the duplicated
|
||||||
|
#node will be the same as the original so we might have {2050: 10})
|
||||||
|
|
||||||
|
with open(meshFilename) as f:
|
||||||
|
line = f.readline()
|
||||||
|
line = f.readline()
|
||||||
|
line = f.readline()
|
||||||
|
line = f.readline()
|
||||||
|
|
||||||
|
cpt = 1
|
||||||
|
while line and line != ' 9999\n':
|
||||||
|
temp = line.split()
|
||||||
|
ElementDict[int(temp[0])] = [int(temp[i]) for i in range(1,9,2) if temp[i] != '0' and int(temp[9]) < 100]
|
||||||
|
ElementList.append(int(temp[0]))
|
||||||
|
line = f.readline()
|
||||||
|
|
||||||
|
for key, value in ElementDict.items():
|
||||||
|
NodeList.extend(value)
|
||||||
|
|
||||||
|
NodeList = list(set(NodeList))
|
||||||
|
|
||||||
|
line = f.readline()
|
||||||
|
while line and line != ' 9999\n':
|
||||||
|
temp = line.split()
|
||||||
|
if int(temp[0]) in NodeList:
|
||||||
|
nodeDict[int(temp[0])] = [float(temp[1]),float(temp[2]),float(temp[3])]
|
||||||
|
line = f.readline()
|
||||||
|
|
||||||
|
|
||||||
|
for e in ElementList:
|
||||||
|
oneD2triangle(e)
|
||||||
|
square2Triangle(e)
|
||||||
|
|
||||||
|
for key in list(ElementDict): #Remove Special Element 902.....
|
||||||
|
if len(ElementDict[key]) != 3:
|
||||||
|
print(key, ElementDict[key])
|
||||||
|
ElementDict.pop(key)
|
||||||
|
ElementList.remove(key)
|
||||||
|
|
||||||
|
nodeOrdered = {}
|
||||||
|
cpt = 1
|
||||||
|
for key, value in nodeDict.items():
|
||||||
|
nodeOrdered[key] = cpt
|
||||||
|
cpt +=1
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
# # Open and Read First Step of the RMA File and Save a Serafin
|
||||||
|
|
||||||
|
# In[72]:
|
||||||
|
|
||||||
|
R=rma()
|
||||||
|
R.open(RMAfilename)
|
||||||
|
R.next()
|
||||||
|
|
||||||
|
if R.type==b'RMA11 ':
|
||||||
|
constName = []
|
||||||
|
for c in constNum:
|
||||||
|
constName.append(R.constit_name[c].decode("utf-8"))
|
||||||
|
RMA11toSerafin()
|
||||||
|
|
||||||
|
if R.type==b'RMA2 ':
|
||||||
|
constName = ['X-VEL','Y-VEL','DEPTH','FREE SURFACE']
|
||||||
|
RMA2toSerafin()
|
||||||
|
|
||||||
@ -0,0 +1,483 @@
|
|||||||
|
# -*- coding: utf-8 -*-
|
||||||
|
#==========================================================#
|
||||||
|
#Last Updated - June 2018
|
||||||
|
#@author: z5025317 Valentin Heimhuber
|
||||||
|
#code for creating climate prioritization plots for NARCLIM variables.
|
||||||
|
#Inputs: Uses CSV files that contain all 12 NARCLIM model runs time series for 1 grid cell created with: P1_NARCliM_NC_to_CSV_CCRC_SS.py
|
||||||
|
|
||||||
|
#Datum offset factors can be found at https://www.mhl.nsw.gov.au/docs/Data%20Conditions%20and%20Fit%20for%20Purpose.pdf
|
||||||
|
#==========================================================#
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#Load packages
|
||||||
|
#==========================================================#
|
||||||
|
import numpy as np
|
||||||
|
import os
|
||||||
|
import pandas as pd
|
||||||
|
import geopandas as gpd
|
||||||
|
import glob
|
||||||
|
import matplotlib
|
||||||
|
import matplotlib.pyplot as plt
|
||||||
|
from datetime import datetime
|
||||||
|
from datetime import timedelta
|
||||||
|
#from matplotlib.backends.backend_pdf import PdfPages
|
||||||
|
import seaborn
|
||||||
|
matplotlib.style.use('ggplot')
|
||||||
|
#set plot parameters
|
||||||
|
ALPHA_figs = 1
|
||||||
|
font = {'family' : 'sans-serif',
|
||||||
|
'weight' : 'normal',
|
||||||
|
'size' : 14}
|
||||||
|
matplotlib.rc('font', **font)
|
||||||
|
#==========================================================#
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#Set Input parameters
|
||||||
|
#==========================================================#
|
||||||
|
#set scenario codes and beginning and end years and corresponding scenario code
|
||||||
|
River = 'Clarence'
|
||||||
|
Order_ID = 'Core_ord_2' #choose order column name
|
||||||
|
fs= ['basecase_2008' , '046_CLA_CAL_01'] #input scenarios
|
||||||
|
startdate = '2008 05 01'
|
||||||
|
enddate = '2008 12 30'
|
||||||
|
tideanalysis_day = '2008 06 01'
|
||||||
|
Surrogate_year = '2019' #plot histrogram for MHL data for this year, if gauge wasn't active yet in the year of the model run
|
||||||
|
|
||||||
|
#River = 'Macleay'
|
||||||
|
#Order_ID = 'Core_order' #choose order column name
|
||||||
|
#fs= ['FinalCalibration', 'FinalCalibration_V2']
|
||||||
|
#startdate = '2007 04 13'
|
||||||
|
#enddate = '2007 04 21'
|
||||||
|
#tideanalysis_day = '2007 04 17'
|
||||||
|
#
|
||||||
|
#River = 'Hastings'
|
||||||
|
#Order_ID = 'Core_order' #choose order column name
|
||||||
|
#fs= ['HAS_CAL_01' , 'HAS_CAL_02']
|
||||||
|
#startdate = '2017 01 01'
|
||||||
|
#enddate = '2017 03 30'
|
||||||
|
#tideanalysis_day = '2017 01 12'
|
||||||
|
|
||||||
|
|
||||||
|
#======================#
|
||||||
|
#Set optional parameters
|
||||||
|
#======================#
|
||||||
|
#set plot parameters
|
||||||
|
ylims = [-1,1.7] #usually the min and max observed water levels in the estuary in AHD used for plot ylims
|
||||||
|
bandwidth = 0.3 #width of bins parameter for seaborn.kde histogram plots
|
||||||
|
|
||||||
|
#HDvariables = ['depth', 'elev']
|
||||||
|
variable = 'elev' #depth or vel
|
||||||
|
maxrowsincsv = 30000000 #limits the nr. of timesteps read in via the RMA extracted txt files
|
||||||
|
#scenario_real_names = ['TWD_HYD_CAL_03', 'TWD_HYD_CAL_04'] #['TWD_HYD_CAL_01', 'TWD_HYD_CAL_02'] #'2008_RMA_1m_SLR']
|
||||||
|
scenario_real_names = fs #these will be used in the plotting so weird scenarios codes can be replaced with more intuitive names if desired. Set to fs if scenario codes from run logfile should be used
|
||||||
|
#==========================================================#
|
||||||
|
#End of set Input parameters
|
||||||
|
#========================================================#
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
#========================================================#
|
||||||
|
#mostly automated part of the code but might have to be double checked - debugged
|
||||||
|
#========================================================#
|
||||||
|
|
||||||
|
scenario_dict = dict(zip(fs, scenario_real_names))
|
||||||
|
Plot_scenario = fs[0] +'_vs_' + fs[1] + Order_ID #'Cal_05vs06vsMHL'
|
||||||
|
|
||||||
|
#set directory path for input and output files
|
||||||
|
main_input_directory = 'J:/Project/wrl2018064 Fisheries RAP/04_Working/05_Modelling/RMA/HEMIP/Models/' + River + '/04_Results/Output/'
|
||||||
|
output_directory = 'J:/Project/wrl2018064 Fisheries RAP/04_Working/05_Modelling/RMA/HEMIP/Models/' + River + '/04_Results/Output/' + '/Postprocessed'
|
||||||
|
if not os.path.exists(output_directory + '/' + Plot_scenario):
|
||||||
|
os.makedirs(output_directory+ '/' + Plot_scenario)
|
||||||
|
|
||||||
|
#load and refine node vs mesh shapefile to store the results of the statistics
|
||||||
|
Gauge_exchange_df = pd.read_csv(glob.glob(main_input_directory + fs[0] + '_' + Order_ID + '/*.csv' )[0])
|
||||||
|
keys = Gauge_exchange_df['NrstNode'].values
|
||||||
|
gauges = Gauge_exchange_df['Station Na'].values
|
||||||
|
#node_dict = dict(zip(keys, gauges))
|
||||||
|
order = Gauge_exchange_df[Order_ID].astype(int).values
|
||||||
|
order_dict = dict(zip(gauges, order))
|
||||||
|
|
||||||
|
#load and refine node vs mesh shapefile to store the results of the statistics
|
||||||
|
Gauge_exchange_df = pd.read_csv(glob.glob(main_input_directory + fs[1] + '_' + Order_ID + '/*.csv' )[0])
|
||||||
|
keys2 = Gauge_exchange_df['NrstNode'].values
|
||||||
|
gauges2 = Gauge_exchange_df['Station Na'].values
|
||||||
|
keys = np.append(keys, keys2)
|
||||||
|
gauges = np.append(gauges, gauges2)
|
||||||
|
node_dict = dict(zip(keys, gauges)) # A PROBLEM REMAINS THAT IF THERE ARE TWO mhl GAUGES THAT RESULTED IN THE SAME NODE id, ONE OF THOSE GAUGES IS LOST HERE CAUSE KEYS NEED TO BE UNIQUE
|
||||||
|
|
||||||
|
gauges = list(node_dict.values()) #MAKE SURE TO ONLY USE GAUGES THAT MADE IT IN THE DICTIONARY
|
||||||
|
|
||||||
|
#Load in situ gauge data
|
||||||
|
WL_df = pd.DataFrame()
|
||||||
|
for gauge in gauges:
|
||||||
|
#gauge = gauges[1]
|
||||||
|
#gauge = 'Harrington'
|
||||||
|
print('loading MHL gauge data for ' + str(gauge))
|
||||||
|
CSVpath = glob.glob('J:/Project/wrl2018064 Fisheries RAP/04_Working/05_Modelling/RMA/HEMIP/Global_Data/MHL_Gauge_Data/20200409_Recieved/*/' + '*' + gauge.replace(" ", "") + '*' )
|
||||||
|
Full_df = pd.read_csv(CSVpath[0] ,header= 0, skiprows= 30, parse_dates = True)
|
||||||
|
Full_df.index = pd.to_datetime(Full_df.Date, format = '%d/%m/%Y') + pd.to_timedelta(Full_df.Time, unit='h')
|
||||||
|
#Full_df = Full_df.loc[datetime.strptime(startdate , '%Y %m %d').date() : datetime.strptime(enddate , '%Y %m %d').date()]
|
||||||
|
Full_df = Full_df.iloc[:,[-2]]
|
||||||
|
Full_df.columns = [gauge]
|
||||||
|
Full_df = Full_df.loc[~Full_df.index.duplicated(keep='first')] #get rid of possible duplicate dates
|
||||||
|
Full_df = Full_df.replace(to_replace ='---', value =np.NaN) #--- is used as the no data value in the MHL data provided
|
||||||
|
Full_df = pd.DataFrame(pd.to_numeric(Full_df[gauge]))
|
||||||
|
Full_df = Full_df - np.float(Gauge_exchange_df['AHDadjust'][Gauge_exchange_df['Station Na']==gauge]) #subtract the datum adjustment factor provided by MHL as written in the shapefile
|
||||||
|
WL_df = pd.concat([WL_df, Full_df], axis=1)
|
||||||
|
#postprocess the in situ gauge dataframe
|
||||||
|
#WL_df = WL_df.replace(to_replace ='---', value =np.NaN) #--- is used as the no data value in the MHL data provided
|
||||||
|
#WL_df = WL_df.convert_objects(convert_numeric=True)
|
||||||
|
#WL_df = WL_df - datum_offset
|
||||||
|
order_colnames=[]
|
||||||
|
for colname in WL_df.columns:
|
||||||
|
order_colnames.append(str(order_dict[colname]) + '_' + colname)
|
||||||
|
#WL_df.columns = order_colnames
|
||||||
|
WL_df.columns = [str(s) + '_MHL' for s in order_colnames]
|
||||||
|
order_colnames.sort() #this will later be used to loop through the MHL gauges in a downstream to upstream order
|
||||||
|
order_colnames = pd.Series(order_colnames).str.replace("(",'')
|
||||||
|
order_colnames = pd.Series(order_colnames).str.replace(")",'')
|
||||||
|
order_colnames = order_colnames[~order_colnames.duplicated(keep='first')]
|
||||||
|
print('Performing analysis in the following order of locations')
|
||||||
|
print(order_colnames)
|
||||||
|
#========================================================#
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
#========================================================#
|
||||||
|
#fully automated part of the code doing the data extraction
|
||||||
|
#========================================================#
|
||||||
|
#load RMA2 data
|
||||||
|
Summary_df = pd.DataFrame()
|
||||||
|
df = pd.DataFrame()
|
||||||
|
for f in fs:
|
||||||
|
#set input and output directories
|
||||||
|
input_directory = main_input_directory + f + '_' + Order_ID
|
||||||
|
# Set working direcotry (where postprocessed NARClIM data is located)
|
||||||
|
os.chdir(input_directory)
|
||||||
|
#Load data file
|
||||||
|
if variable == 'depth' or variable == 'elev':
|
||||||
|
Clim_Var_CSVs = glob.glob('*' + variable + '*')
|
||||||
|
clim_var_csv_path = Clim_Var_CSVs[0]
|
||||||
|
df = pd.read_csv(clim_var_csv_path, index_col=False, sep=' ', nrows= maxrowsincsv)
|
||||||
|
df.index = pd.to_datetime(df.Year, format = '%Y') + pd.to_timedelta(df.Hour, unit='h')
|
||||||
|
df= df.drop(columns=['Year', 'Hour'])
|
||||||
|
a=len(df.columns)-1
|
||||||
|
df=df.iloc[:,:a]
|
||||||
|
if variable == 'vel':
|
||||||
|
#x velocity
|
||||||
|
Clim_Var_CSVs = glob.glob('*' +'x'+ variable + '*')
|
||||||
|
clim_var_csv_path = Clim_Var_CSVs[0]
|
||||||
|
df = pd.read_csv(clim_var_csv_path, index_col=False, sep=' ', nrows= maxrowsincsv)
|
||||||
|
df.index = pd.to_datetime(df.Year, format = '%Y') + pd.to_timedelta(df.Hour, unit='h')
|
||||||
|
dfx= df.drop(columns=['Year', 'Hour','1'])
|
||||||
|
#y velocity
|
||||||
|
Clim_Var_CSVs = glob.glob('*' +'y'+ variable + '*')
|
||||||
|
clim_var_csv_path = Clim_Var_CSVs[0]
|
||||||
|
df = pd.read_csv(clim_var_csv_path, index_col=False, sep=' ',nrows= maxrowsincsv)
|
||||||
|
df.index = pd.to_datetime(df.Year, format = '%Y') + pd.to_timedelta(df.Hour, unit='h')
|
||||||
|
dfy= df.drop(columns=['Year', 'Hour','1'])
|
||||||
|
df = np.sqrt(dfx*dfx + dfy*dfy)
|
||||||
|
df.columns = df.columns + '_'+ f + '_'+ variable
|
||||||
|
#cut down the df to start and end date
|
||||||
|
df = df[datetime.strptime(startdate , '%Y %m %d').date():datetime.strptime(enddate, '%Y %m %d').date()]
|
||||||
|
Summary_df = pd.concat([Summary_df, df], axis=1, join='outer')
|
||||||
|
HD_Summary_df = Summary_df
|
||||||
|
#========================================================#
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
#========================================================#
|
||||||
|
#interactive data analysis part of the code - alternatively, the dataframe could be written to csv at this stage and analysed with a separate code.
|
||||||
|
#========================================================#
|
||||||
|
#Summary_df.columns = chainages
|
||||||
|
#subset the input data frame
|
||||||
|
Summary_df_nodes = pd.DataFrame()
|
||||||
|
#for node, gauges in nodes:
|
||||||
|
for key,value in node_dict.items():
|
||||||
|
df1 = HD_Summary_df.filter(regex='^'+ str(key)+'_').filter(regex=variable)
|
||||||
|
df1.columns = [value + '_' + str(s) for s in df1.columns]
|
||||||
|
Summary_df_nodes = pd.concat([Summary_df_nodes, df1], axis=1, join='outer')
|
||||||
|
|
||||||
|
for key,value in scenario_dict.items():
|
||||||
|
Summary_df_nodes.columns = pd.Series(Summary_df_nodes.columns).str.replace(key, value)
|
||||||
|
|
||||||
|
combined_df = pd.DataFrame()
|
||||||
|
combined_df = pd.concat([Summary_df_nodes , WL_df], axis=1, join='outer')
|
||||||
|
combined_df.columns = pd.Series(combined_df.columns).str.replace("(",'') #brackets mess up the regex commands below
|
||||||
|
combined_df.columns = pd.Series(combined_df.columns).str.replace(")",'')
|
||||||
|
combined_df = combined_df.loc[:,~combined_df.columns.duplicated()]
|
||||||
|
combined_df_hourly = combined_df.resample('1H').max()
|
||||||
|
|
||||||
|
#this needs to be fixed to be more generic!
|
||||||
|
Histogram_df = combined_df.loc[datetime.strptime(startdate , '%Y %m %d').date() : datetime.strptime(enddate , '%Y %m %d').date()] #dataframe for histogram comparison between RMA and MHL
|
||||||
|
|
||||||
|
#========================================================#
|
||||||
|
#drop first gauge which doesn't have any data in 2006
|
||||||
|
#gauges = gauges[1:]
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
#========================================================#
|
||||||
|
# Plot water level histograms at control points
|
||||||
|
#========================================================#
|
||||||
|
ylims = [-0.9,2.5]
|
||||||
|
#set plot parameters
|
||||||
|
ALPHA_figs = 1
|
||||||
|
font = {'family' : 'sans-serif',
|
||||||
|
'weight' : 'normal',
|
||||||
|
'size' : 5}
|
||||||
|
matplotlib.rc('font', **font)
|
||||||
|
lwd_hist = 2 #line width of histograms
|
||||||
|
|
||||||
|
i=1
|
||||||
|
png_out_name = output_directory + '/' + Plot_scenario + '/RMA_vs_MHL_gauges_water level histogram and exceedance planes '+ startdate + '_' + enddate + '.pdf'
|
||||||
|
fig = plt.figure(figsize=(len(gauges)*7,12))
|
||||||
|
|
||||||
|
for Gauge in order_colnames:
|
||||||
|
#Gauge = order_colnames[0]
|
||||||
|
ax=plt.subplot(1,len(gauges),i)
|
||||||
|
plt.title( Gauge + ' WL '+ startdate + '-' + enddate)
|
||||||
|
xlocation = 0.6
|
||||||
|
#Gauge_only_df = Histogram_df.filter(regex=Gauge[3:])
|
||||||
|
Gauge_only_df = combined_df.filter(regex=Gauge[3:])
|
||||||
|
Gauge_only_df = Gauge_only_df.iloc[:,[0,1,2]]
|
||||||
|
#scenario 1
|
||||||
|
TS_1 = Gauge_only_df[Gauge+'_MHL']
|
||||||
|
TS_1.name = 'MHL full period' + str(TS_1.index[0].date()) + '_' + str(TS_1.index[-1].date())
|
||||||
|
if len(TS_1[TS_1.notnull()])>0:
|
||||||
|
color_1 = 'blue'
|
||||||
|
width = 1
|
||||||
|
#full period density comparison for individual gauges overlaid by tidal planes
|
||||||
|
seaborn.kdeplot(TS_1, vertical=True, color=color_1, lw=1, linestyle='dotted', ax=ax)
|
||||||
|
|
||||||
|
Gauge_only_df = Gauge_only_df[Gauge_only_df.iloc[:,0].notnull()]
|
||||||
|
TS_1 = Gauge_only_df[Gauge+'_MHL']
|
||||||
|
TS_1 = TS_1.loc[datetime.strptime(startdate , '%Y %m %d').date() : datetime.strptime(enddate , '%Y %m %d').date()]
|
||||||
|
TS_1.name = 'MHL period from ' + startdate + '_' + enddate
|
||||||
|
if len(TS_1[TS_1.notnull()])>0:
|
||||||
|
color_1 = 'royalblue'
|
||||||
|
width = 1
|
||||||
|
#full period density comparison for individual gauges overlaid by tidal planes
|
||||||
|
seaborn.kdeplot(TS_1, vertical=True, color=color_1,bw=bandwidth, lw=lwd_hist, ax=ax)
|
||||||
|
#seaborn.kdeplot(Gauge_only_df.iloc[:,2], vertical=True, color=color_1, lw=3)
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,87), color=color_1, linestyle='solid', lw=width, alpha=1)
|
||||||
|
plt.text( xlocation , (np.nanpercentile(TS_1,87)), '13% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,93.6), color=color_1, linestyle='dotted', lw=width, alpha=1)
|
||||||
|
plt.text(xlocation , (np.nanpercentile(TS_1,93.6)), '6.4% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,98.7), color=color_1, linestyle='dashed', lw=width, alpha=1)
|
||||||
|
plt.text( xlocation ,np.nanpercentile(TS_1,98.7) , '1.3% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,99.99), color=color_1, linestyle='dashdot', lw=width, alpha=1)
|
||||||
|
plt.text( xlocation ,np.nanpercentile(TS_1,99.99) , '0.01% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,50), color=color_1, linestyle='solid', lw=width, alpha=1)
|
||||||
|
plt.text( xlocation , np.nanpercentile(TS_1,50), '50% exceedance', ha='left', va='bottom')
|
||||||
|
else:
|
||||||
|
TS_1 = Gauge_only_df[Gauge+'_MHL']
|
||||||
|
TS_1 = TS_1.loc[datetime.strptime(Surrogate_year + ' ' + startdate[5:], '%Y %m %d').date() : datetime.strptime('2019 ' + enddate[5:] , '%Y %m %d').date()]
|
||||||
|
TS_1.name = 'MHL perd outside of model perd ' + startdate + '_' + enddate
|
||||||
|
if len(TS_1[TS_1.notnull()])>0:
|
||||||
|
color_1 = 'royalblue'
|
||||||
|
width = 1
|
||||||
|
#full period density comparison for individual gauges overlaid by tidal planes
|
||||||
|
seaborn.kdeplot(TS_1, vertical=True, color=color_1,bw=bandwidth, lw=lwd_hist, ax=ax)
|
||||||
|
#seaborn.kdeplot(Gauge_only_df.iloc[:,2], vertical=True, color=color_1, lw=3)
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,87), color=color_1, linestyle='solid', lw=width, alpha=1)
|
||||||
|
plt.text( xlocation , (np.nanpercentile(TS_1,87)), '13% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,93.6), color=color_1, linestyle='dotted', lw=width, alpha=1)
|
||||||
|
plt.text(xlocation , (np.nanpercentile(TS_1,93.6)), '6.4% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,98.7), color=color_1, linestyle='dashed', lw=width, alpha=1)
|
||||||
|
plt.text( xlocation ,np.nanpercentile(TS_1,98.7) , '1.3% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,99.99), color=color_1, linestyle='dashdot', lw=width, alpha=1)
|
||||||
|
plt.text( xlocation ,np.nanpercentile(TS_1,99.99) , '0.01% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,50), color=color_1, linestyle='solid', lw=width, alpha=1)
|
||||||
|
plt.text( xlocation , np.nanpercentile(TS_1,50), '50% exceedance', ha='left', va='bottom')
|
||||||
|
|
||||||
|
#scenario 2
|
||||||
|
#TS_1 = Gauge_only_df.filter(regex='elev')
|
||||||
|
TS_1 = Gauge_only_df.iloc[:,0][Gauge_only_df.iloc[:,0].notnull()]
|
||||||
|
color_1 = 'red'
|
||||||
|
width = 1
|
||||||
|
seaborn.kdeplot(TS_1, vertical=True, color=color_1,bw=bandwidth, lw=lwd_hist, ax=ax)
|
||||||
|
#plt.axhline(y=np.nanpercentile(TS_1,87), color=color_1, linestyle='solid', lw=width, alpha=1)
|
||||||
|
#plt.text( xlocation , (np.nanpercentile(TS_1,87)), '13% exceedance', ha='left', va='bottom')
|
||||||
|
#plt.axhline(y=np.nanpercentile(TS_1,93.6), color=color_1, linestyle='dotted', lw=width, alpha=1)
|
||||||
|
#plt.text(xlocation , (np.nanpercentile(TS_1,93.6)), '6.4% exceedance', ha='left', va='bottom')
|
||||||
|
#plt.axhline(y=np.nanpercentile(TS_1,98.7), color=color_1, linestyle='dashed', lw=width, alpha=1)
|
||||||
|
#plt.text( xlocation ,np.nanpercentile(TS_1,98.7) , '1.3% exceedance', ha='left', va='bottom')
|
||||||
|
#plt.axhline(y=np.nanpercentile(TS_1,99.99), color=color_1, linestyle='dashdot', lw=width, alpha=1)
|
||||||
|
#plt.text( xlocation ,np.nanpercentile(TS_1,99.99) , '0.01% exceedance', ha='left', va='bottom')
|
||||||
|
#plt.axhline(y=np.nanpercentile(TS_1,50), color=color_1, linestyle='solid', lw=width, alpha=1)
|
||||||
|
#plt.text( xlocation , np.nanpercentile(TS_1,50), '50% exceedance', ha='left', va='bottom')
|
||||||
|
|
||||||
|
#scenario 3
|
||||||
|
TS_1 = Gauge_only_df.iloc[:,1][Gauge_only_df.iloc[:,1].notnull()]
|
||||||
|
color_1 = 'limegreen'
|
||||||
|
width = 1
|
||||||
|
seaborn.kdeplot(TS_1, vertical=True, color=color_1,bw=bandwidth, lw=lwd_hist, ax=ax)
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,87), color=color_1, linestyle='solid', lw=width, alpha=1)
|
||||||
|
#plt.text( xlocation , (np.nanpercentile(TS_1,87)), '13% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,93.6), color=color_1, linestyle='dotted', lw=width, alpha=1)
|
||||||
|
#plt.text(xlocation , (np.nanpercentile(TS_1,93.6)), '6.4% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,98.7), color=color_1, linestyle='dashed', lw=width, alpha=1)
|
||||||
|
#plt.text( xlocation ,np.nanpercentile(TS_1,98.7) , '1.3% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,99.99), color=color_1, linestyle='dashdot', lw=width, alpha=1)
|
||||||
|
#plt.text( xlocation ,np.nanpercentile(TS_1,99.99) , '0.01% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,50), color=color_1, linestyle='solid', lw=width, alpha=1)
|
||||||
|
#plt.text( xlocation , np.nanpercentile(TS_1,50), '50% exceedance', ha='left', va='bottom')
|
||||||
|
|
||||||
|
#finish the plot
|
||||||
|
plt.ylim(ylims)
|
||||||
|
if i == 1:
|
||||||
|
plt.ylabel("Water level [m AHD]")
|
||||||
|
|
||||||
|
plt.xlabel("Probability/density")
|
||||||
|
fig.tight_layout()
|
||||||
|
i=i+1
|
||||||
|
fig.savefig(png_out_name)
|
||||||
|
plt.close()
|
||||||
|
#========================================================#
|
||||||
|
|
||||||
|
|
||||||
|
#========================================================#
|
||||||
|
# Plot MHL water levels only
|
||||||
|
#========================================================#
|
||||||
|
ylims = [-1,1.5]
|
||||||
|
#set plot parameters
|
||||||
|
ALPHA_figs = 1
|
||||||
|
font = {'family' : 'sans-serif',
|
||||||
|
'weight' : 'normal',
|
||||||
|
'size' : 6}
|
||||||
|
matplotlib.rc('font', **font)
|
||||||
|
|
||||||
|
i=1
|
||||||
|
png_out_name = output_directory + '/' + Plot_scenario + '/MHL_gauges_water level histograms and exceedance planes '+ startdate + '_' + enddate + '.pdf'
|
||||||
|
fig = plt.figure(figsize=(len(gauges)*5,11))
|
||||||
|
|
||||||
|
for Gauge in order_colnames:
|
||||||
|
#Gauge = order_colnames[0]
|
||||||
|
ax=plt.subplot(1,len(gauges),i)
|
||||||
|
plt.title( Gauge + ' wL '+ startdate + '-' + enddate)
|
||||||
|
xlocation = 0.6
|
||||||
|
combined_df.columns
|
||||||
|
TS_1 = combined_df[Gauge+'_MHL']
|
||||||
|
TS_1 = TS_1[TS_1.notnull()]
|
||||||
|
#scenario 1
|
||||||
|
TS_1.name = 'Full Period ' + str(TS_1.index[0].date()) + '_' + str(TS_1.index[-1].date())
|
||||||
|
color_1 = 'royalblue'
|
||||||
|
width = 1
|
||||||
|
#full period density comparison for individual gauges overlaid by tidal planes
|
||||||
|
seaborn.kdeplot(TS_1, vertical=True, color=color_1,bw=bandwidth, lw=2, ax=ax)
|
||||||
|
#seaborn.kdeplot(Gauge_only_df.iloc[:,2], vertical=True, color=color_1, lw=3)
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,87), color=color_1, linestyle='solid', lw=width, alpha=1)
|
||||||
|
plt.text( xlocation , (np.nanpercentile(TS_1,87)), '13% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,93.6), color=color_1, linestyle='dotted', lw=width, alpha=1)
|
||||||
|
plt.text(xlocation , (np.nanpercentile(TS_1,93.6)), '6.4% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,98.7), color=color_1, linestyle='dashed', lw=width, alpha=1)
|
||||||
|
plt.text( xlocation ,np.nanpercentile(TS_1,98.7) , '1.3% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,99.99), color=color_1, linestyle='dashdot', lw=width, alpha=1)
|
||||||
|
plt.text( xlocation ,np.nanpercentile(TS_1,99.99) , '0.01% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,50), color=color_1, linestyle='solid', lw=width, alpha=1)
|
||||||
|
plt.text( xlocation , np.nanpercentile(TS_1,50), '50% exceedance', ha='left', va='bottom')
|
||||||
|
|
||||||
|
#scenario 2
|
||||||
|
#TS_1 = Gauge_only_df.filter(regex='elev')
|
||||||
|
|
||||||
|
TS_1 = TS_1.loc[datetime.strptime(startdate , '%Y %m %d').date() : datetime.strptime(enddate , '%Y %m %d').date()]
|
||||||
|
if len(TS_1[TS_1.notnull()])>0:
|
||||||
|
TS_1.name = 'Period from ' + startdate + '_' + enddate
|
||||||
|
color_1 = 'red'
|
||||||
|
width = 1
|
||||||
|
seaborn.kdeplot(TS_1, vertical=True, color=color_1,bw=bandwidth, lw=2, ax=ax)
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,87), color=color_1, linestyle='solid', lw=width, alpha=1)
|
||||||
|
plt.text( xlocation , (np.nanpercentile(TS_1,87)), '13% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,93.6), color=color_1, linestyle='dotted', lw=width, alpha=1)
|
||||||
|
plt.text(xlocation , (np.nanpercentile(TS_1,93.6)), '6.4% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,98.7), color=color_1, linestyle='dashed', lw=width, alpha=1)
|
||||||
|
plt.text( xlocation ,np.nanpercentile(TS_1,98.7) , '1.3% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,99.99), color=color_1, linestyle='dashdot', lw=width, alpha=1)
|
||||||
|
plt.text( xlocation ,np.nanpercentile(TS_1,99.99) , '0.01% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,50), color=color_1, linestyle='solid', lw=width, alpha=1)
|
||||||
|
plt.text( xlocation , np.nanpercentile(TS_1,50), '50% exceedance', ha='left', va='bottom')
|
||||||
|
|
||||||
|
#finish the plot
|
||||||
|
plt.ylim(ylims)
|
||||||
|
if i == 1:
|
||||||
|
plt.ylabel("Water level [m AHD]")
|
||||||
|
|
||||||
|
plt.xlabel("Probability/density")
|
||||||
|
fig.tight_layout()
|
||||||
|
i=i+1
|
||||||
|
fig.savefig(png_out_name)
|
||||||
|
plt.close()
|
||||||
|
#========================================================#
|
||||||
|
|
||||||
|
|
||||||
|
#========================================================#
|
||||||
|
# Plot time series over various intervals at control points
|
||||||
|
#========================================================#
|
||||||
|
#set plot parameters
|
||||||
|
ALPHA_figs = 1
|
||||||
|
font = {'family' : 'sans-serif',
|
||||||
|
'weight' : 'normal',
|
||||||
|
'size' : 5}
|
||||||
|
matplotlib.rc('font', **font)
|
||||||
|
|
||||||
|
halfwindows = [1,2,5,10,15]
|
||||||
|
for halfwindow in halfwindows:
|
||||||
|
#halfwindow = 10
|
||||||
|
png_out_name = output_directory + '/' + Plot_scenario + '/water level time series '+ startdate + '_' + enddate + ' _window_of_' + str(halfwindow*2) +'_days.pdf'
|
||||||
|
fig = plt.figure(figsize=(10,len(gauges)*3))
|
||||||
|
i=1
|
||||||
|
for Gauge in order_colnames:
|
||||||
|
Gauge_only_df = combined_df.filter(regex=Gauge[3:])
|
||||||
|
#combined_df.columns
|
||||||
|
#Gauge_only_df = df1.filter(regex=Gauge)
|
||||||
|
#Gauge_only_df_1 = Gauge_only_df.loc[(Gauge_only_df.index >= '2008-05-09 12:00:00') & (Gauge_only_df.index <= '2008-05-20 12:00:00')]
|
||||||
|
Gauge_only_df_1 = Gauge_only_df[datetime.strptime(tideanalysis_day , '%Y %m %d').date()- timedelta(days=halfwindow) : datetime.strptime(tideanalysis_day , '%Y %m %d').date() + timedelta(days=halfwindow)]
|
||||||
|
Gauge_only_df_1 = Gauge_only_df_1[Gauge_only_df_1.iloc[:,0].notnull()]
|
||||||
|
ax=plt.subplot(len(gauges),1,i)
|
||||||
|
plt.title('Tidal water levels at ' + Gauge + ' | ' + River +' Estuary')
|
||||||
|
ax.set_prop_cycle(color=['steelblue', 'coral', 'steelblue', 'deeppink'],linestyle=[ '-', '-','--','-'], lw=[0.8,0.8,0.8,0.8])
|
||||||
|
Gauge_only_df_1.iloc[:,[0,1,2]].plot( legend=False, ax=ax)
|
||||||
|
|
||||||
|
plt.axhline(y=0, color='black', linestyle='-', lw=0.8, alpha=0.5)
|
||||||
|
#plt.axhline(y=0.9, color='tomato', linestyle='--', lw=1, alpha=0.5)
|
||||||
|
plt.ylim(ylims)
|
||||||
|
plt.ylabel("Water level [m AHD]")
|
||||||
|
plt.xlabel("Time")
|
||||||
|
ax.legend()
|
||||||
|
fig.tight_layout()
|
||||||
|
i=i+1
|
||||||
|
fig.savefig(png_out_name)
|
||||||
|
plt.close()
|
||||||
|
#========================================================#
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
##========================================================#
|
||||||
|
##write out exceedance data to csv
|
||||||
|
##========================================================#
|
||||||
|
#Summary={}
|
||||||
|
#Summary['13% exceedance'] = Wollow_13ExPr
|
||||||
|
#Summary['6.4% exceedance'] = Wollow_6p4ExPr
|
||||||
|
#Summary['1.3% exceedance'] = Wollow_1_3ExPr
|
||||||
|
#Summary['0.01% exceedance'] = Wollow_0p01ExPr
|
||||||
|
#Summary['50% exceedance'] = Wollow_50ExPr
|
||||||
|
#pdf1 = pd.DataFrame(Summary, index=[0])
|
||||||
|
#pdf1.to_csv(os.path.join( Out_Folder + Gauge + '_entrance_stats.csv'))
|
||||||
|
##========================================================#
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -0,0 +1,749 @@
|
|||||||
|
# -*- coding: utf-8 -*-
|
||||||
|
#==========================================================#
|
||||||
|
#Last Updated - June 2018
|
||||||
|
#@author: z5025317 Valentin Heimhuber
|
||||||
|
#code for creating climate prioritization plots for NARCLIM variables.
|
||||||
|
#Inputs: Uses CSV files that contain all 12 NARCLIM model runs time series for 1 grid cell created with: P1_NARCliM_NC_to_CSV_CCRC_SS.py
|
||||||
|
|
||||||
|
#Datum offset factors can be found at https://www.mhl.nsw.gov.au/docs/Data%20Conditions%20and%20Fit%20for%20Purpose.pdf
|
||||||
|
#==========================================================#
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#Load packages
|
||||||
|
#==========================================================#
|
||||||
|
import numpy as np
|
||||||
|
import os
|
||||||
|
import pandas as pd
|
||||||
|
import geopandas as gpd
|
||||||
|
import glob
|
||||||
|
import matplotlib
|
||||||
|
import matplotlib.pyplot as plt
|
||||||
|
from datetime import datetime
|
||||||
|
from datetime import timedelta
|
||||||
|
#from matplotlib.backends.backend_pdf import PdfPages
|
||||||
|
import seaborn
|
||||||
|
matplotlib.style.use('ggplot')
|
||||||
|
#set plot parameters
|
||||||
|
ALPHA_figs = 1
|
||||||
|
font = {'family' : 'sans-serif',
|
||||||
|
'weight' : 'normal',
|
||||||
|
'size' : 14}
|
||||||
|
matplotlib.rc('font', **font)
|
||||||
|
#==========================================================#
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#Set Input parameters
|
||||||
|
#==========================================================#
|
||||||
|
#set scenario codes and beginning and end years and corresponding scenario code
|
||||||
|
River = 'Hastings'
|
||||||
|
Order_ID = 'Core_order' #choose order column name
|
||||||
|
|
||||||
|
#input scenarios
|
||||||
|
fs= ['HAS_CAL_01' , 'HAS_CAL_02'] #,'TWD_HYD_CAL_12'] #['TWD_HYD_CAL_05', 'TWD_HYD_CAL_06'] #['TWD_HYD_CAL_01','TWD_HYD_CAL_02']#, 'SLR_1m_2008_FN1']
|
||||||
|
#scenario_real_names = ['TWD_HYD_CAL_03', 'TWD_HYD_CAL_04'] #['TWD_HYD_CAL_01', 'TWD_HYD_CAL_02'] #'2008_RMA_1m_SLR'] #these will be used in the plotting so weird scenarios codes can be replaced with more intuitive names if desired
|
||||||
|
scenario_real_names = fs
|
||||||
|
scenario_dict = dict(zip(fs, scenario_real_names))
|
||||||
|
|
||||||
|
#name of plot scenario/experiment . This is a unique identifier for this particular scenario comparison
|
||||||
|
Plot_scenario = fs[0] +'_vs_' + fs[1] + 'v2'#'Cal_05vs06vsMHL'
|
||||||
|
|
||||||
|
#HDvariables = ['depth', 'elev']
|
||||||
|
variable = 'elev' #depth or vel
|
||||||
|
|
||||||
|
maxrowsincsv = 30000000 #limits the nr. of timesteps read in via the RMA extracted txt files
|
||||||
|
ylims = [-1,1.7] #usually the min and max observed water levels in the estuary in AHD used for plot ylims
|
||||||
|
|
||||||
|
#time frames for analysis
|
||||||
|
startdate = '2017 01 01'
|
||||||
|
enddate = '2017 03 30'
|
||||||
|
tideanalysis_day = '2017 02 01'
|
||||||
|
#year=range(startyear, endyear+1)
|
||||||
|
#========================================================#
|
||||||
|
|
||||||
|
|
||||||
|
#========================================================#
|
||||||
|
#mostly automated part of the code but might have to be double checked - debugged
|
||||||
|
#========================================================#
|
||||||
|
#set directory path for input and output files
|
||||||
|
main_input_directory = 'J:/Project/wrl2018064 Fisheries RAP/04_Working/05_Modelling/RMA/HEMIP/Models/' + River + '/04_Results/Output/'
|
||||||
|
output_directory = 'J:/Project/wrl2018064 Fisheries RAP/04_Working/05_Modelling/RMA/HEMIP/Models/' + River + '/04_Results/Output/' + '/Postprocessed'
|
||||||
|
if not os.path.exists(output_directory + '/' + Plot_scenario):
|
||||||
|
os.makedirs(output_directory+ '/' + Plot_scenario)
|
||||||
|
|
||||||
|
#load and refine node vs mesh shapefile to store the results of the statistics
|
||||||
|
Gauge_exchange_df = pd.read_csv(glob.glob(main_input_directory + fs[0] + '_' + Order_ID + '/*.csv' )[0])
|
||||||
|
keys = Gauge_exchange_df['NrstNode'].values
|
||||||
|
gauges = Gauge_exchange_df['Station Na'].values
|
||||||
|
#node_dict = dict(zip(keys, gauges))
|
||||||
|
order = Gauge_exchange_df[Order_ID].astype(int).values
|
||||||
|
order_dict = dict(zip(gauges, order))
|
||||||
|
|
||||||
|
#load and refine node vs mesh shapefile to store the results of the statistics
|
||||||
|
Gauge_exchange_df = pd.read_csv(glob.glob(main_input_directory + fs[1] + '_' + Order_ID + '/*.csv' )[0])
|
||||||
|
keys2 = Gauge_exchange_df['NrstNode'].values
|
||||||
|
gauges2 = Gauge_exchange_df['Station Na'].values
|
||||||
|
keys = np.append(keys, keys2)
|
||||||
|
gauges = np.append(gauges, gauges2)
|
||||||
|
node_dict = dict(zip(keys, gauges))
|
||||||
|
|
||||||
|
|
||||||
|
#Load in situ gauge data
|
||||||
|
WL_df = pd.DataFrame()
|
||||||
|
for gauge in gauges:
|
||||||
|
#gauge = gauges[1]
|
||||||
|
#gauge = 'Harrington'
|
||||||
|
print ('loading MHL gauge data for ' + gauge)
|
||||||
|
CSVpath = glob.glob('J:/Project/wrl2018064 Fisheries RAP/04_Working/05_Modelling/RMA/HEMIP/Global_Data/MHL_Gauge_Data/20200409_Recieved/*/' + '*' + gauge.replace(" ", "") + '*' )
|
||||||
|
Full_df = pd.read_csv(CSVpath[0] ,header= 0, skiprows= 30, parse_dates = True)
|
||||||
|
Full_df.index = pd.to_datetime(Full_df.Date, format = '%d/%m/%Y') + pd.to_timedelta(Full_df.Time, unit='h')
|
||||||
|
#Full_df = Full_df.loc[datetime.strptime(startdate , '%Y %m %d').date() : datetime.strptime(enddate , '%Y %m %d').date()]
|
||||||
|
Full_df = Full_df.iloc[:,[-2]]
|
||||||
|
Full_df.columns = [gauge]
|
||||||
|
Full_df = Full_df.loc[~Full_df.index.duplicated(keep='first')] #get rid of possible duplicate dates
|
||||||
|
Full_df = Full_df.replace(to_replace ='---', value =np.NaN) #--- is used as the no data value in the MHL data provided
|
||||||
|
Full_df = pd.DataFrame(pd.to_numeric(Full_df[gauge]))
|
||||||
|
Full_df = Full_df - np.float(Gauge_exchange_df['AHDadjust'][Gauge_exchange_df['Station Na']==gauge]) #subtract the datum adjustment factor provided by MHL as written in the shapefile
|
||||||
|
WL_df = pd.concat([WL_df, Full_df], axis=1)
|
||||||
|
#postprocess the in situ gauge dataframe
|
||||||
|
#WL_df = WL_df.replace(to_replace ='---', value =np.NaN) #--- is used as the no data value in the MHL data provided
|
||||||
|
#WL_df = WL_df.convert_objects(convert_numeric=True)
|
||||||
|
#WL_df = WL_df - datum_offset
|
||||||
|
order_colnames=[]
|
||||||
|
for colname in WL_df.columns:
|
||||||
|
print (colname)
|
||||||
|
order_colnames.append(str(order_dict[colname]) + '_' + colname)
|
||||||
|
#WL_df.columns = order_colnames
|
||||||
|
WL_df.columns = [str(s) + '_MHL' for s in order_colnames]
|
||||||
|
order_colnames.sort() #this will late be used to loop through the MHL gauges in a downstream to upstream order
|
||||||
|
order_colnames = pd.Series(order_colnames).str.replace("(",'')
|
||||||
|
order_colnames = pd.Series(order_colnames).str.replace(")",'')
|
||||||
|
#========================================================#
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
#========================================================#
|
||||||
|
#fully automated part of the code doing the data extraction
|
||||||
|
#========================================================#
|
||||||
|
#load RMA2 data
|
||||||
|
Summary_df = pd.DataFrame()
|
||||||
|
df = pd.DataFrame()
|
||||||
|
for f in fs:
|
||||||
|
#set input and output directories
|
||||||
|
input_directory = main_input_directory + f + '_' + Order_ID
|
||||||
|
# Set working direcotry (where postprocessed NARClIM data is located)
|
||||||
|
os.chdir(input_directory)
|
||||||
|
#Load data file
|
||||||
|
if variable == 'depth' or variable == 'elev':
|
||||||
|
Clim_Var_CSVs = glob.glob('*' + variable + '*')
|
||||||
|
clim_var_csv_path = Clim_Var_CSVs[0]
|
||||||
|
df = pd.read_csv(clim_var_csv_path, index_col=False, sep=' ', nrows= maxrowsincsv)
|
||||||
|
df.index = pd.to_datetime(df.Year, format = '%Y') + pd.to_timedelta(df.Hour, unit='h')
|
||||||
|
df= df.drop(columns=['Year', 'Hour'])
|
||||||
|
a=len(df.columns)-1
|
||||||
|
df=df.iloc[:,:a]
|
||||||
|
if variable == 'vel':
|
||||||
|
#x velocity
|
||||||
|
Clim_Var_CSVs = glob.glob('*' +'x'+ variable + '*')
|
||||||
|
clim_var_csv_path = Clim_Var_CSVs[0]
|
||||||
|
df = pd.read_csv(clim_var_csv_path, index_col=False, sep=' ', nrows= maxrowsincsv)
|
||||||
|
df.index = pd.to_datetime(df.Year, format = '%Y') + pd.to_timedelta(df.Hour, unit='h')
|
||||||
|
dfx= df.drop(columns=['Year', 'Hour','1'])
|
||||||
|
#y velocity
|
||||||
|
Clim_Var_CSVs = glob.glob('*' +'y'+ variable + '*')
|
||||||
|
clim_var_csv_path = Clim_Var_CSVs[0]
|
||||||
|
df = pd.read_csv(clim_var_csv_path, index_col=False, sep=' ',nrows= maxrowsincsv)
|
||||||
|
df.index = pd.to_datetime(df.Year, format = '%Y') + pd.to_timedelta(df.Hour, unit='h')
|
||||||
|
dfy= df.drop(columns=['Year', 'Hour','1'])
|
||||||
|
df = np.sqrt(dfx*dfx + dfy*dfy)
|
||||||
|
df.columns = df.columns + '_'+ f + '_'+ variable
|
||||||
|
#cut down the df to start and end date
|
||||||
|
df = df[datetime.strptime(startdate , '%Y %m %d').date():datetime.strptime(enddate, '%Y %m %d').date()]
|
||||||
|
Summary_df = pd.concat([Summary_df, df], axis=1, join='outer')
|
||||||
|
HD_Summary_df = Summary_df
|
||||||
|
#========================================================#
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
#========================================================#
|
||||||
|
#interactive data analysis part of the code - alternatively, the dataframe could be written to csv at this stage and analysed with a separate code.
|
||||||
|
#========================================================#
|
||||||
|
#Summary_df.columns = chainages
|
||||||
|
#subset the input data frame
|
||||||
|
Summary_df_nodes = pd.DataFrame()
|
||||||
|
#for node, gauges in nodes:
|
||||||
|
for key,value in node_dict.items():
|
||||||
|
df1 = HD_Summary_df.filter(regex='^'+ str(key)+'_').filter(regex=variable)
|
||||||
|
df1.columns = [value + '_' + str(s) for s in df1.columns]
|
||||||
|
Summary_df_nodes = pd.concat([Summary_df_nodes, df1], axis=1, join='outer')
|
||||||
|
|
||||||
|
for key,value in scenario_dict.items():
|
||||||
|
Summary_df_nodes.columns = pd.Series(Summary_df_nodes.columns).str.replace(key, value)
|
||||||
|
|
||||||
|
combined_df = pd.DataFrame()
|
||||||
|
combined_df = pd.concat([Summary_df_nodes , WL_df], axis=1, join='outer')
|
||||||
|
combined_df.columns = pd.Series(combined_df.columns).str.replace("(",'') #brackets mess up the regex commands below
|
||||||
|
combined_df.columns = pd.Series(combined_df.columns).str.replace(")",'')
|
||||||
|
combined_df_hourly = combined_df.resample('1H').max()
|
||||||
|
|
||||||
|
#this needs to be fixed to be more generic!
|
||||||
|
Histogram_df = combined_df_hourly.loc[datetime.strptime(startdate , '%Y %m %d').date() : datetime.strptime(enddate , '%Y %m %d').date()] #dataframe for histogram comparison between RMA and MHL
|
||||||
|
#========================================================#
|
||||||
|
#drop first gauge which doesn't have any data in 2006
|
||||||
|
#gauges = gauges[1:]
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
#========================================================#
|
||||||
|
# Plot water level histograms at control points
|
||||||
|
#========================================================#
|
||||||
|
ylims = [-0.9,2.5]
|
||||||
|
#set plot parameters
|
||||||
|
ALPHA_figs = 1
|
||||||
|
font = {'family' : 'sans-serif',
|
||||||
|
'weight' : 'normal',
|
||||||
|
'size' : 6}
|
||||||
|
matplotlib.rc('font', **font)
|
||||||
|
|
||||||
|
i=1
|
||||||
|
png_out_name = output_directory + '/' + Plot_scenario + '/RMA_vs_MHL_gauges_water level histogram and exceedance planes '+ startdate + '_' + enddate + '.pdf'
|
||||||
|
fig = plt.figure(figsize=(len(gauges)*5,11))
|
||||||
|
|
||||||
|
for Gauge in order_colnames:
|
||||||
|
#Gauge = order_colnames[0]
|
||||||
|
ax=plt.subplot(1,len(gauges),i)
|
||||||
|
plt.title( Gauge + ' water level density comparison '+ startdate + '-' + enddate)
|
||||||
|
xlocation = 0.6
|
||||||
|
Gauge_only_df = Histogram_df.filter(regex=Gauge[2:])
|
||||||
|
combined_df.columns
|
||||||
|
#scenario 1
|
||||||
|
TS_1 = Gauge_only_df[Gauge+'_MHL'].iloc[:,0]
|
||||||
|
if len(TS_1[TS_1.notnull()])>0:
|
||||||
|
color_1 = 'royalblue'
|
||||||
|
width = 1
|
||||||
|
#full period density comparison for individual gauges overlaid by tidal planes
|
||||||
|
seaborn.kdeplot(TS_1, vertical=True, color=color_1, lw=2, ax=ax)
|
||||||
|
#seaborn.kdeplot(Gauge_only_df.iloc[:,2], vertical=True, color=color_1, lw=3)
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,87), color=color_1, linestyle='solid', lw=width, alpha=1)
|
||||||
|
plt.text( xlocation , (np.nanpercentile(TS_1,87)), '13% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,93.6), color=color_1, linestyle='dotted', lw=width, alpha=1)
|
||||||
|
plt.text(xlocation , (np.nanpercentile(TS_1,93.6)), '6.4% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,98.7), color=color_1, linestyle='dashed', lw=width, alpha=1)
|
||||||
|
plt.text( xlocation ,np.nanpercentile(TS_1,98.7) , '1.3% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,99.99), color=color_1, linestyle='dashdot', lw=width, alpha=1)
|
||||||
|
plt.text( xlocation ,np.nanpercentile(TS_1,99.99) , '0.01% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,50), color=color_1, linestyle='solid', lw=width, alpha=1)
|
||||||
|
plt.text( xlocation , np.nanpercentile(TS_1,50), '50% exceedance', ha='left', va='bottom')
|
||||||
|
|
||||||
|
#scenario 2
|
||||||
|
#TS_1 = Gauge_only_df.filter(regex='elev')
|
||||||
|
TS_1 = Gauge_only_df.iloc[:,0][Gauge_only_df.iloc[:,0].notnull()]
|
||||||
|
color_1 = 'red'
|
||||||
|
width = 1
|
||||||
|
seaborn.kdeplot(TS_1, vertical=True, color=color_1, lw=2, ax=ax)
|
||||||
|
#plt.axhline(y=np.nanpercentile(TS_1,87), color=color_1, linestyle='solid', lw=width, alpha=1)
|
||||||
|
#plt.text( xlocation , (np.nanpercentile(TS_1,87)), '13% exceedance', ha='left', va='bottom')
|
||||||
|
#plt.axhline(y=np.nanpercentile(TS_1,93.6), color=color_1, linestyle='dotted', lw=width, alpha=1)
|
||||||
|
#plt.text(xlocation , (np.nanpercentile(TS_1,93.6)), '6.4% exceedance', ha='left', va='bottom')
|
||||||
|
#plt.axhline(y=np.nanpercentile(TS_1,98.7), color=color_1, linestyle='dashed', lw=width, alpha=1)
|
||||||
|
#plt.text( xlocation ,np.nanpercentile(TS_1,98.7) , '1.3% exceedance', ha='left', va='bottom')
|
||||||
|
#plt.axhline(y=np.nanpercentile(TS_1,99.99), color=color_1, linestyle='dashdot', lw=width, alpha=1)
|
||||||
|
#plt.text( xlocation ,np.nanpercentile(TS_1,99.99) , '0.01% exceedance', ha='left', va='bottom')
|
||||||
|
#plt.axhline(y=np.nanpercentile(TS_1,50), color=color_1, linestyle='solid', lw=width, alpha=1)
|
||||||
|
#plt.text( xlocation , np.nanpercentile(TS_1,50), '50% exceedance', ha='left', va='bottom')
|
||||||
|
|
||||||
|
#scenario 3
|
||||||
|
TS_1 = Gauge_only_df.iloc[:,1][Gauge_only_df.iloc[:,1].notnull()]
|
||||||
|
color_1 = 'limegreen'
|
||||||
|
width = 1
|
||||||
|
seaborn.kdeplot(TS_1, vertical=True, color=color_1, lw=2, ax=ax)
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,87), color=color_1, linestyle='solid', lw=width, alpha=1)
|
||||||
|
#plt.text( xlocation , (np.nanpercentile(TS_1,87)), '13% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,93.6), color=color_1, linestyle='dotted', lw=width, alpha=1)
|
||||||
|
#plt.text(xlocation , (np.nanpercentile(TS_1,93.6)), '6.4% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,98.7), color=color_1, linestyle='dashed', lw=width, alpha=1)
|
||||||
|
#plt.text( xlocation ,np.nanpercentile(TS_1,98.7) , '1.3% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,99.99), color=color_1, linestyle='dashdot', lw=width, alpha=1)
|
||||||
|
#plt.text( xlocation ,np.nanpercentile(TS_1,99.99) , '0.01% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,50), color=color_1, linestyle='solid', lw=width, alpha=1)
|
||||||
|
#plt.text( xlocation , np.nanpercentile(TS_1,50), '50% exceedance', ha='left', va='bottom')
|
||||||
|
|
||||||
|
#finish the plot
|
||||||
|
plt.ylim(ylims)
|
||||||
|
if i == 1:
|
||||||
|
plt.ylabel("Water level [m AHD]")
|
||||||
|
|
||||||
|
plt.xlabel("Probability/density")
|
||||||
|
fig.tight_layout()
|
||||||
|
i=i+1
|
||||||
|
fig.savefig(png_out_name)
|
||||||
|
plt.close()
|
||||||
|
#========================================================#
|
||||||
|
|
||||||
|
|
||||||
|
#========================================================#
|
||||||
|
# Plot MHL water levels only
|
||||||
|
#========================================================#
|
||||||
|
ylims = [-1,1.5]
|
||||||
|
#set plot parameters
|
||||||
|
ALPHA_figs = 1
|
||||||
|
font = {'family' : 'sans-serif',
|
||||||
|
'weight' : 'normal',
|
||||||
|
'size' : 6}
|
||||||
|
matplotlib.rc('font', **font)
|
||||||
|
|
||||||
|
i=1
|
||||||
|
png_out_name = output_directory + '/' + Plot_scenario + '/MHL_gauges_water level histograms and exceedance planes '+ startdate + '_' + enddate + '.pdf'
|
||||||
|
fig = plt.figure(figsize=(len(gauges)*5,11))
|
||||||
|
|
||||||
|
for Gauge in order_colnames:
|
||||||
|
#Gauge = order_colnames[0]
|
||||||
|
ax=plt.subplot(1,len(gauges),i)
|
||||||
|
plt.title( Gauge + ' water level density comparison '+ startdate + '-' + enddate)
|
||||||
|
xlocation = 0.6
|
||||||
|
TS_1 = combined_df[Gauge+'_MHL'].iloc[:,0]
|
||||||
|
TS_1 = TS_1[TS_1.notnull()]
|
||||||
|
#scenario 1
|
||||||
|
TS_1.name = 'Full Period ' + str(TS_1.index[0].date()) + '_' + str(TS_1.index[-1].date())
|
||||||
|
color_1 = 'royalblue'
|
||||||
|
width = 1
|
||||||
|
#full period density comparison for individual gauges overlaid by tidal planes
|
||||||
|
seaborn.kdeplot(TS_1, vertical=True, color=color_1, lw=2, ax=ax)
|
||||||
|
#seaborn.kdeplot(Gauge_only_df.iloc[:,2], vertical=True, color=color_1, lw=3)
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,87), color=color_1, linestyle='solid', lw=width, alpha=1)
|
||||||
|
plt.text( xlocation , (np.nanpercentile(TS_1,87)), '13% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,93.6), color=color_1, linestyle='dotted', lw=width, alpha=1)
|
||||||
|
plt.text(xlocation , (np.nanpercentile(TS_1,93.6)), '6.4% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,98.7), color=color_1, linestyle='dashed', lw=width, alpha=1)
|
||||||
|
plt.text( xlocation ,np.nanpercentile(TS_1,98.7) , '1.3% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,99.99), color=color_1, linestyle='dashdot', lw=width, alpha=1)
|
||||||
|
plt.text( xlocation ,np.nanpercentile(TS_1,99.99) , '0.01% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,50), color=color_1, linestyle='solid', lw=width, alpha=1)
|
||||||
|
plt.text( xlocation , np.nanpercentile(TS_1,50), '50% exceedance', ha='left', va='bottom')
|
||||||
|
|
||||||
|
#scenario 2
|
||||||
|
#TS_1 = Gauge_only_df.filter(regex='elev')
|
||||||
|
|
||||||
|
TS_1 = TS_1.loc[datetime.strptime(startdate , '%Y %m %d').date() : datetime.strptime(enddate , '%Y %m %d').date()]
|
||||||
|
if len(TS_1[TS_1.notnull()])>0:
|
||||||
|
TS_1.name = 'Period from ' + startdate + '_' + enddate
|
||||||
|
color_1 = 'red'
|
||||||
|
width = 1
|
||||||
|
seaborn.kdeplot(TS_1, vertical=True, color=color_1, lw=2, ax=ax)
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,87), color=color_1, linestyle='solid', lw=width, alpha=1)
|
||||||
|
plt.text( xlocation , (np.nanpercentile(TS_1,87)), '13% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,93.6), color=color_1, linestyle='dotted', lw=width, alpha=1)
|
||||||
|
plt.text(xlocation , (np.nanpercentile(TS_1,93.6)), '6.4% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,98.7), color=color_1, linestyle='dashed', lw=width, alpha=1)
|
||||||
|
plt.text( xlocation ,np.nanpercentile(TS_1,98.7) , '1.3% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,99.99), color=color_1, linestyle='dashdot', lw=width, alpha=1)
|
||||||
|
plt.text( xlocation ,np.nanpercentile(TS_1,99.99) , '0.01% exceedance', ha='left', va='bottom')
|
||||||
|
plt.axhline(y=np.nanpercentile(TS_1,50), color=color_1, linestyle='solid', lw=width, alpha=1)
|
||||||
|
plt.text( xlocation , np.nanpercentile(TS_1,50), '50% exceedance', ha='left', va='bottom')
|
||||||
|
|
||||||
|
#finish the plot
|
||||||
|
plt.ylim(ylims)
|
||||||
|
if i == 1:
|
||||||
|
plt.ylabel("Water level [m AHD]")
|
||||||
|
|
||||||
|
plt.xlabel("Probability/density")
|
||||||
|
fig.tight_layout()
|
||||||
|
i=i+1
|
||||||
|
fig.savefig(png_out_name)
|
||||||
|
plt.close()
|
||||||
|
#========================================================#
|
||||||
|
|
||||||
|
|
||||||
|
#========================================================#
|
||||||
|
# Plot time series over various intervals at control points
|
||||||
|
#========================================================#
|
||||||
|
#set plot parameters
|
||||||
|
ALPHA_figs = 1
|
||||||
|
font = {'family' : 'sans-serif',
|
||||||
|
'weight' : 'normal',
|
||||||
|
'size' : 5}
|
||||||
|
matplotlib.rc('font', **font)
|
||||||
|
|
||||||
|
halfwindows = [1,2,5,10]
|
||||||
|
for halfwindow in halfwindows:
|
||||||
|
#halfwindow = 10
|
||||||
|
png_out_name = output_directory + '/' + Plot_scenario + '/water level time series '+ startdate + '_' + enddate + ' _window_of_' + str(halfwindow*2) +'_days.pdf'
|
||||||
|
fig = plt.figure(figsize=(10,len(gauges)*3))
|
||||||
|
i=1
|
||||||
|
for Gauge in order_colnames:
|
||||||
|
Gauge_only_df = combined_df.filter(regex=Gauge[2:])
|
||||||
|
#Gauge_only_df = df1.filter(regex=Gauge)
|
||||||
|
#Gauge_only_df_1 = Gauge_only_df.loc[(Gauge_only_df.index >= '2008-05-09 12:00:00') & (Gauge_only_df.index <= '2008-05-20 12:00:00')]
|
||||||
|
Gauge_only_df_1 = Gauge_only_df[datetime.strptime(tideanalysis_day , '%Y %m %d').date()- timedelta(days=halfwindow) : datetime.strptime(tideanalysis_day , '%Y %m %d').date() + timedelta(days=halfwindow) ]
|
||||||
|
Gauge_only_df_1 = Gauge_only_df_1[Gauge_only_df_1.iloc[:,0].notnull()]
|
||||||
|
ax=plt.subplot(len(gauges),1,i)
|
||||||
|
plt.title('Tidal water levels at ' + Gauge + ' | ' + River +' Estuary')
|
||||||
|
ax.set_prop_cycle(color=['steelblue', 'coral', 'steelblue', 'deeppink'],linestyle=[ '-', '-','--','-'], lw=[0.8,0.8,0.8,0.8])
|
||||||
|
Gauge_only_df_1.iloc[:,[0,1,2]].plot( legend=False, ax=ax)
|
||||||
|
|
||||||
|
plt.axhline(y=0, color='black', linestyle='-', lw=0.8, alpha=0.5)
|
||||||
|
#plt.axhline(y=0.9, color='tomato', linestyle='--', lw=1, alpha=0.5)
|
||||||
|
plt.ylim(ylims)
|
||||||
|
plt.ylabel("Water level [m AHD]")
|
||||||
|
plt.xlabel("Time")
|
||||||
|
ax.legend()
|
||||||
|
fig.tight_layout()
|
||||||
|
i=i+1
|
||||||
|
fig.savefig(png_out_name)
|
||||||
|
plt.close()
|
||||||
|
#========================================================#
|
||||||
|
# Plot water level histograms at control points
|
||||||
|
#========================================================#
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
##========================================================#
|
||||||
|
##write out exceedance data to csv
|
||||||
|
##========================================================#
|
||||||
|
#Summary={}
|
||||||
|
#Summary['13% exceedance'] = Wollow_13ExPr
|
||||||
|
#Summary['6.4% exceedance'] = Wollow_6p4ExPr
|
||||||
|
#Summary['1.3% exceedance'] = Wollow_1_3ExPr
|
||||||
|
#Summary['0.01% exceedance'] = Wollow_0p01ExPr
|
||||||
|
#Summary['50% exceedance'] = Wollow_50ExPr
|
||||||
|
#pdf1 = pd.DataFrame(Summary, index=[0])
|
||||||
|
#pdf1.to_csv(os.path.join( Out_Folder + Gauge + '_entrance_stats.csv'))
|
||||||
|
##========================================================#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
##Create Bathymetry along the nodes and chainages
|
||||||
|
#Elev_df = HD_Summary_df.filter(regex='Hwq003').filter(regex='elev')
|
||||||
|
#Elev_df.columns = chainages
|
||||||
|
#Depth_df = HD_Summary_df.filter(regex='Hwq003').filter(regex='depth')
|
||||||
|
#Depth_df.columns = chainages
|
||||||
|
#Bathy_df = pd.DataFrame(Elev_df.loc[maxtide_index] - Depth_df.loc[maxtide_index])
|
||||||
|
#Bathy_df.columns = ['Bathymetry']
|
||||||
|
#Bathy_df.plot()
|
||||||
|
#
|
||||||
|
#bathy_out_path = 'H:/WRL_Projects/Hunter_CC_Modeling/Module_6/03_Results/Chainages/Hunter_nodes_bathy.csv'
|
||||||
|
#Bathy_df.to_csv(bathy_out_path)
|
||||||
|
##plt.show()
|
||||||
|
#
|
||||||
|
#
|
||||||
|
##==========================================================#
|
||||||
|
##Tidal analysis
|
||||||
|
##==========================================================#
|
||||||
|
##read in tide data
|
||||||
|
#tides_df = tides_dfm[datetime.strptime(tideanalysis_day , '%Y %m %d').date()- timedelta(days=2) : datetime.strptime(tideanalysis_day , '%Y %m %d').date() + timedelta(days=3) ]
|
||||||
|
#central_tides_df = tides_dfm[datetime.strptime(tideanalysis_day , '%Y %m %d').date():datetime.strptime(tideanalysis_day , '%Y %m %d').date()]
|
||||||
|
#
|
||||||
|
#maxtide_index = central_tides_df['tide'].idxmax()
|
||||||
|
#end_maxtide_index = maxtide_index + timedelta(days=0.4)
|
||||||
|
#beg_maxtide_index = maxtide_index - timedelta(days=0.2)
|
||||||
|
#short_tides_df = tides_df[beg_maxtide_index: end_maxtide_index]
|
||||||
|
#short_tides_df.plot(cmap='viridis', legend=True)
|
||||||
|
#mintide_index = short_tides_df['tide'].idxmin()
|
||||||
|
#
|
||||||
|
##plot the minimum and maximum elevation along the estuary occuring within a single tidal cycle
|
||||||
|
#Short_tide_elev_df = HD_Summary_df.filter(regex='elev')[min(short_tides_df.index):max(short_tides_df.index)]
|
||||||
|
#max_min_1cycle_elev_0slr = pd.concat([Short_tide_elev_df.filter(regex=fs[0]).max(), Short_tide_elev_df.filter(regex=fs[0]).min()], axis=1, join='inner')
|
||||||
|
#max_min_1cycle_elev_09slr = pd.concat([Short_tide_elev_df.filter(regex=fs[1]).max(), Short_tide_elev_df.filter(regex=fs[1]).min()], axis=1, join='inner')
|
||||||
|
#max_min_1cycle_elev_0slr.index = chainages
|
||||||
|
#max_min_1cycle_elev_09slr.index = chainages
|
||||||
|
#max_min_1cycle_elev = pd.concat([max_min_1cycle_elev_0slr, max_min_1cycle_elev_09slr], axis=1, join='outer')
|
||||||
|
#max_min_1cycle_elev.columns = ['MaxElev 0 SLR','MinElev 0 SLR','MaxElev 0.9 SLR','MinElev 0.9 SLR' ]
|
||||||
|
#max_min_1cycle_elev.plot(cmap='viridis', legend=True)
|
||||||
|
#
|
||||||
|
##plot the elevation along the estuary at exactly the time of high and low tide
|
||||||
|
#max_min_extime_elev_0slr = pd.concat([HD_Summary_df.filter(regex=fs[0]).filter(regex='elev').loc[maxtide_index], Summary_df.filter(regex=fs[0]).loc[mintide_index]], axis=1, join='outer')
|
||||||
|
#max_min_extime_elev_09slr = pd.concat([HD_Summary_df.filter(regex=fs[1]).filter(regex='elev').loc[maxtide_index], Summary_df.filter(regex=fs[1]).loc[mintide_index]], axis=1, join='outer')
|
||||||
|
#max_min_extime_elev_0slr.index = chainages
|
||||||
|
#max_min_extime_elev_09slr.index = chainages
|
||||||
|
#max_min_extime_elev = pd.concat([max_min_extime_elev_0slr, max_min_extime_elev_09slr], axis=1, join='outer')
|
||||||
|
#max_min_extime_elev.columns = ['HigT Elev 0SLR','LowT Elev 0SLR','HigT Elev 0.9 SLR','LowT Elev 0.9 SLR' ]
|
||||||
|
#max_min_extime_elev.plot(cmap='viridis', legend=True)
|
||||||
|
#
|
||||||
|
#png_out_name = output_directory +'/' + Plot_scenario + '/' + variable + '_high_low_tide_analysis_' + Plot_scenario + '.pdf'
|
||||||
|
#fig = plt.figure(figsize=(17,20))
|
||||||
|
#ax=plt.subplot(3,1,1)
|
||||||
|
#plt.title('Max and min water surface elevation along the estuary over one tidal cycle')
|
||||||
|
#ax.set_prop_cycle(color=['slateblue', 'slateblue', 'tomato', 'tomato'], linestyle=['--', '-', '--', '-'], lw=[2,2,2,2])
|
||||||
|
#max_min_1cycle_elev.plot( legend=False, ax=ax)
|
||||||
|
#plt.axhline(y=0, color='slateblue', linestyle='--', lw=1, alpha=0.5)
|
||||||
|
#plt.axhline(y=0.9, color='tomato', linestyle='--', lw=1, alpha=0.5)
|
||||||
|
#plt.ylim(ylims)
|
||||||
|
#plt.ylabel("Water level [m AHD]")
|
||||||
|
#plt.xlabel("Distance from ocean boundary [km]")
|
||||||
|
## Put a legend to the right of the current axis
|
||||||
|
##lgd = ax.legend(loc='center left', bbox_to_anchor=(1, 0.5))
|
||||||
|
#ax.legend()
|
||||||
|
##plot tides
|
||||||
|
#ax=plt.subplot(3,1,2)
|
||||||
|
#plt.title('Max and min water surface elevation along the estuary at time of high & low tide')
|
||||||
|
#ax.set_prop_cycle(color=['slateblue', 'slateblue', 'tomato', 'tomato'], linestyle=['--', '-', '--', '-'], lw=[2,2,2,2])
|
||||||
|
#max_min_extime_elev.plot(legend=False, ax=ax)
|
||||||
|
#plt.ylabel("Water level [m AHD]")
|
||||||
|
#plt.ylim(ylims)
|
||||||
|
#plt.xlabel("Distance from ocean boundary [km]")
|
||||||
|
##lgd = ax.legend(loc='center left', bbox_to_anchor=(1, 0.5))
|
||||||
|
#ax.legend()
|
||||||
|
##plot tides
|
||||||
|
#ax=plt.subplot(3,1,3)
|
||||||
|
#plt.ylim(ylims)
|
||||||
|
#plt.title('Tide at open ocean boundary')
|
||||||
|
#short_tides_df.plot(cmap='viridis', legend=False, ax=ax)
|
||||||
|
#ax.axvline(maxtide_index, color='black', linestyle='--')
|
||||||
|
#ax.axvline(mintide_index, color='black', linestyle='-')
|
||||||
|
#plt.xlabel("Time")
|
||||||
|
#plt.ylabel("Water level [m AHD]")
|
||||||
|
##lgd = ax.legend(loc='center left', bbox_to_anchor=(1, 0.5))
|
||||||
|
#ax.legend()
|
||||||
|
#fig.tight_layout()
|
||||||
|
#fig.savefig(png_out_name)
|
||||||
|
#plt.close()
|
||||||
|
#
|
||||||
|
#
|
||||||
|
##==========================================================#
|
||||||
|
##animate 2 tidal cycles baseline scenario:
|
||||||
|
##==========================================================#
|
||||||
|
#Six_day_tide_elev_df = HD_Summary_df.filter(regex=fs[0]).filter(regex='elev')[maxtide_index - timedelta(days=2): maxtide_index + timedelta(days=3)]
|
||||||
|
#Six_day_tide_elev_df.columns = chainages
|
||||||
|
#Six_day_tides_df = tides_df[maxtide_index - timedelta(days=2): maxtide_index + timedelta(days=3)]
|
||||||
|
#Six_day_tides_df.plot(cmap='viridis', legend=True)
|
||||||
|
#
|
||||||
|
#Six_day_flow_df = Flow_df[maxtide_index - timedelta(days=2): maxtide_index + timedelta(days=3)]
|
||||||
|
#Six_day_flow_df = pd.concat([Six_day_tides_df, Six_day_flow_df], axis=1, join='outer')['Q[ML/d]'].interpolate()
|
||||||
|
#Six_day_flow_df.plot(cmap='viridis', legend=True)
|
||||||
|
#
|
||||||
|
#ii=0
|
||||||
|
#for index in Six_day_tide_elev_df.index[0::4]:
|
||||||
|
# ii=ii+1
|
||||||
|
# #index = Six_day_tide_elev_df.index[1]
|
||||||
|
# png_out_path = output_directory + '/' + Plot_scenario + '/TidalCycle_' + variable + '_' + Plot_scenario + '/'
|
||||||
|
# if not os.path.exists(png_out_path):
|
||||||
|
# os.makedirs(png_out_path)
|
||||||
|
# #png_out_name = png_out_path + str(index) + 'longitudinalXS.png'
|
||||||
|
# png_out_name = png_out_path + str(ii) + variable + '_longitudinalXS.png'
|
||||||
|
# fig = plt.figure(figsize=(17,20))
|
||||||
|
# ax=plt.subplot(3,1,1)
|
||||||
|
# plt.title('Water surface elevation along the estuary')
|
||||||
|
# Six_day_tide_elev_df.loc[index].plot(color='blue', legend=False)
|
||||||
|
# #plt.axhline(y=0, color='r', linestyle='--', lw=1, alpha=0.5)
|
||||||
|
# plt.axhline(tides_df.loc[index].values, color='black',lw=0.5, linestyle='--')
|
||||||
|
# plt.ylim(ylims)
|
||||||
|
# plt.ylabel("Water level [m AHD]")
|
||||||
|
# plt.xlabel("Distance from ocean boundary [km]")
|
||||||
|
# #plot tides
|
||||||
|
# ax=plt.subplot(3,1,2)
|
||||||
|
# plt.ylim(-1.1,1.3)
|
||||||
|
# plt.title('Tide at open ocean boundary')
|
||||||
|
# Six_day_tides_df.plot(cmap='viridis', legend=False, ax=ax)
|
||||||
|
# ax.axvline(index, color='green', linestyle='--')
|
||||||
|
# plt.xlabel("Time")
|
||||||
|
# plt.ylabel("Water level [m AHD]")
|
||||||
|
#
|
||||||
|
# ax=plt.subplot(3,1,3)
|
||||||
|
# #plt.ylim(ylims)
|
||||||
|
# plt.title('Flow at the upstream river boundary')
|
||||||
|
# Six_day_flow_df.plot(color='black', legend=False, ax=ax)
|
||||||
|
# ax.axvline(index, color='green', linestyle='--')
|
||||||
|
# plt.xlabel("Time")
|
||||||
|
# plt.ylabel("Hunter Inflow [ML/day]")
|
||||||
|
#
|
||||||
|
# fig.tight_layout()
|
||||||
|
# fig.savefig(png_out_name)
|
||||||
|
# plt.close()
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
#
|
||||||
|
##==========================================================#
|
||||||
|
##animate 2 tidal cycles baseline + SLR scenario:
|
||||||
|
##==========================================================#
|
||||||
|
#Six_day_tide_elev_df_0slr = HD_Summary_df.filter(regex=fs[0]).filter(regex='elev')[maxtide_index - timedelta(days=1): maxtide_index + timedelta(days=1)]
|
||||||
|
#Six_day_tide_elev_df_0slr.columns = chainages
|
||||||
|
#Six_day_tide_elev_df_09slr = HD_Summary_df.filter(regex=fs[1]).filter(regex='elev')[maxtide_index - timedelta(days=1): maxtide_index + timedelta(days=1)]
|
||||||
|
#Six_day_tide_elev_df_09slr.columns = chainages
|
||||||
|
#Six_day_tides_df = tides_df[maxtide_index - timedelta(days=1): maxtide_index + timedelta(days=1.5)]
|
||||||
|
#Six_day_tides_df.plot(cmap='viridis', legend=True)
|
||||||
|
#
|
||||||
|
#ii=0
|
||||||
|
#for index in Six_day_tide_elev_df_0slr.index:
|
||||||
|
# ii=ii+1
|
||||||
|
# #index = Six_day_tide_elev_df_0slr.index[1]
|
||||||
|
# png_out_path = output_directory + '/' + Plot_scenario + '/TidalCycle_SLR_' + variable + '_' + Plot_scenario + '/'
|
||||||
|
# if not os.path.exists(png_out_path):
|
||||||
|
# os.makedirs(png_out_path)
|
||||||
|
#
|
||||||
|
# #png_out_name = png_out_path + str(index) + 'longitudinalXS.png'
|
||||||
|
# png_out_name = png_out_path + str(ii) + variable + '_longitudinalXS.png'
|
||||||
|
# max_min_extime_elev_both = pd.concat([Six_day_tide_elev_df_0slr.loc[index], Six_day_tide_elev_df_09slr.loc[index]], axis=1, join='outer')
|
||||||
|
# max_min_extime_elev_both.columns = ['Present Day','0.9m SLR']
|
||||||
|
#
|
||||||
|
# fig = plt.figure(figsize=(17,12))
|
||||||
|
# ax=plt.subplot(2,1,1)
|
||||||
|
# plt.ylim(ylims)
|
||||||
|
# plt.title('Water surface elevation along the estuary')
|
||||||
|
# ax.set_prop_cycle(color=['slateblue','tomato'], linestyle=['-', '-'], lw=[2,2])
|
||||||
|
# max_min_extime_elev_both.plot(ax=ax)
|
||||||
|
# ax.legend(loc=1)
|
||||||
|
# plt.axhline(y=0, color='r', linestyle='--', lw=1, alpha=0.5)
|
||||||
|
# plt.ylim(-1.1,2.5)
|
||||||
|
# plt.ylabel("Water level [m AHD]")
|
||||||
|
# plt.xlabel("Distance from ocean boundary [km]")
|
||||||
|
#
|
||||||
|
# #plot tides
|
||||||
|
# ax=plt.subplot(2,1,2)
|
||||||
|
# plt.ylim(-1.1,1.5)
|
||||||
|
# plt.title('Tide at open ocean boundary')
|
||||||
|
# Six_day_tides_df.plot(cmap='viridis', legend=False, ax=ax)
|
||||||
|
# ax.axvline(index, color='green', linestyle='--')
|
||||||
|
# plt.xlabel("Time")
|
||||||
|
# plt.ylabel("Water level [m AHD]")
|
||||||
|
# fig.tight_layout()
|
||||||
|
# fig.savefig(png_out_name)
|
||||||
|
plt.close()
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
#for NODE in node:
|
||||||
|
# NODE = str(NODE)
|
||||||
|
# #=========#
|
||||||
|
# #comparison time series plot at node
|
||||||
|
# #=========#
|
||||||
|
# #out name
|
||||||
|
# png_out_file_name = comparison_code + '_' + variable + '_' + NODE + '_time_series.png'
|
||||||
|
# png_out_path = png_output_directory + '/' + png_out_file_name
|
||||||
|
# #
|
||||||
|
# plotin_df = Summary_df.filter(regex=NODE)
|
||||||
|
# #prepare data frame for plot
|
||||||
|
# fig = plt.figure(figsize=(14,18))
|
||||||
|
# ax=plt.subplot(4,1,1)
|
||||||
|
# #start and end dat of plots
|
||||||
|
# plt.title(variable + '_' + NODE + ' - time series')
|
||||||
|
# start_date = datetime(int('1996'), int('02'), int('01'))
|
||||||
|
# end_date = datetime(int('1996'), int('02'), int('5'))
|
||||||
|
# plotin_df1=plotin_df[start_date:end_date]
|
||||||
|
# ymin = min(plotin_df1.min()) - 0.01 *min(plotin_df1.min())
|
||||||
|
# ymax = max(plotin_df1.max()) + 0.01 *max(plotin_df1.max())
|
||||||
|
# plotin_df1.plot(ylim=(ymin,ymax) ,legend=False, ax=ax)
|
||||||
|
# #plt.legend( loc=1)
|
||||||
|
# plt.xticks([])
|
||||||
|
#
|
||||||
|
# ax=plt.subplot(4,1,2)
|
||||||
|
# start_date = datetime(int('1996'), int('02'), int('01'))
|
||||||
|
# end_date = datetime(int('1996'), int('02'), int('3'))
|
||||||
|
# plotin_df2=plotin_df[start_date:end_date]
|
||||||
|
# ymin = min(plotin_df2.min()) - 0.1 *min(plotin_df2.min())
|
||||||
|
# ymax = max(plotin_df2.max()) + 0.1 *max(plotin_df2.max())
|
||||||
|
# plotin_df2.plot(ylim=(ymin,ymax),legend=False, ax=ax)
|
||||||
|
# #plt.legend( loc=1)
|
||||||
|
# ax.xaxis.grid(False)
|
||||||
|
#
|
||||||
|
# ax=plt.subplot(4,1,3)
|
||||||
|
# plt.title(variable + '_' + NODE + ' - monthly maximum')
|
||||||
|
# Monthly_max = plotin_df.resample('M').max()
|
||||||
|
# Monthly_max.plot(ax=ax,legend=False)
|
||||||
|
# plt.legend( loc=1)
|
||||||
|
# ax.xaxis.grid(False)
|
||||||
|
#
|
||||||
|
# ax=plt.subplot(4,1,4)
|
||||||
|
# plt.title(variable + '_' + NODE + ' - monthly mean')
|
||||||
|
# Monthly_mean = plotin_df.resample('M').mean()
|
||||||
|
# Monthly_mean.plot(ax=ax)
|
||||||
|
# #plt.legend(bbox_to_anchor=(0., 1.02, 1., .102), loc=3,
|
||||||
|
# # ncol=2, mode="expand", borderaxespad=0.)
|
||||||
|
# #plt.legend( loc=1)
|
||||||
|
# ax.xaxis.grid(False)
|
||||||
|
#
|
||||||
|
# #ax.patch.set_alpha(ALPHA_figs)
|
||||||
|
# fig.patch.set_alpha(ALPHA_figs)
|
||||||
|
# fig.tight_layout()
|
||||||
|
# fig.savefig(png_out_path)
|
||||||
|
# plt.close()
|
||||||
|
# #=========#
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -0,0 +1,163 @@
|
|||||||
|
from struct import *
|
||||||
|
from pylab import *
|
||||||
|
import sys
|
||||||
|
|
||||||
|
# Updated 10/11/15 BMM : Added mesh.
|
||||||
|
# Updated 10/11/15 MD : Added dictionnary initialisation in mesh.
|
||||||
|
|
||||||
|
class rma:
|
||||||
|
def __init__(self):
|
||||||
|
self.file='not opened yet'
|
||||||
|
# May want to do some other things here later
|
||||||
|
|
||||||
|
def open(self,filename):
|
||||||
|
self.file=open(('%s.rma' % (filename)),'rb')
|
||||||
|
self.header=self.file.read(1000)
|
||||||
|
self.type=self.header[0:10]
|
||||||
|
self.title=self.header[100:172]
|
||||||
|
self.geometry=self.header[200:300]
|
||||||
|
self.num_nodes=int(self.header[40:50])
|
||||||
|
self.num_elements=int(self.header[50:60])
|
||||||
|
if self.type==b'RMA11 ':
|
||||||
|
self.num_constits=int(self.header[60:70])
|
||||||
|
if len(self.header[80:90].strip())==0:
|
||||||
|
self.num_sedlayers=0
|
||||||
|
else:
|
||||||
|
self.num_sedlayers=int(self.header[80:90])
|
||||||
|
self.constit_name=[]
|
||||||
|
self.constit_name.append("NULL")
|
||||||
|
i=1
|
||||||
|
#print(self.num_constits)
|
||||||
|
while i <= self.num_constits:
|
||||||
|
#print(i, self.num_constits, i <= self.num_constits)
|
||||||
|
self.constit_name.append(self.header[300+(i-1)*8:308+(i-1)*8])
|
||||||
|
if self.header[300+(i-1)*8:308+(i-1)*8]==" SSED ":
|
||||||
|
self.constit_name.append(" BSHEAR")
|
||||||
|
self.constit_name.append("BedThick")
|
||||||
|
j=1
|
||||||
|
while j<=self.num_sedlayers:
|
||||||
|
self.constit_name.append(" L%dThick" % j)
|
||||||
|
j=j+1
|
||||||
|
i=i+1
|
||||||
|
#if self.num_sedlayers > 0:
|
||||||
|
# self.num_constits=self.num_constits+2+self.num_sedlayers
|
||||||
|
|
||||||
|
# Header format in RMA2
|
||||||
|
|
||||||
|
# HEADER(1:10) ='RMA2 '
|
||||||
|
# HEADER(11:20)=DATEC = Date of run
|
||||||
|
# HEADER(21:30)=TIMEC = Time of run
|
||||||
|
# HEADER(31:40)=ZONEC = Time zone
|
||||||
|
# HEADER(41:50)=NP = Number of nodes
|
||||||
|
# HEADER(51:60)=NE = Number of elements
|
||||||
|
# HEADER(101:172)=TITLE = Title line
|
||||||
|
# HEADER(201:300)=FNAME = File name of binary geometry
|
||||||
|
|
||||||
|
# Header format in RMA11
|
||||||
|
# HEADER(1:10) - Model
|
||||||
|
# HEADER(11:20) - DATEC of model runtime
|
||||||
|
# HEADER(21:30) - TIMEC of model runtime
|
||||||
|
# HEADER(31:40) - ZONEC of model runtime
|
||||||
|
# HEADER(41:90) - '(5I10)' NP,NE,NQAL,IGS,LGS or '(5I10)' NP,NE,NQAL,ISEDS,NLAYT
|
||||||
|
# HEADER(101:172) - TITLE
|
||||||
|
# HEADER(301:540) - '(30A8)' CLABL
|
||||||
|
# HEADER(201:248) - FNAMD directory of the geometry
|
||||||
|
# HEADER(251:298) - FNAM2 filename of the geometry
|
||||||
|
|
||||||
|
def mesh(self,filename):
|
||||||
|
self.meshfile=open(('%s.rm1' % (filename)),'r')
|
||||||
|
l=self.meshfile.readline()
|
||||||
|
while l[0:5]!=' 9999' and len(l)!=5:
|
||||||
|
l=self.meshfile.readline()
|
||||||
|
l=self.meshfile.readline()
|
||||||
|
self.node_e={}
|
||||||
|
self.node_n={}
|
||||||
|
self.node_z={}
|
||||||
|
while l[0:10]!=' 9999' and len(l)!=10:
|
||||||
|
ll=l.split()
|
||||||
|
self.node_e[ll[0]]=ll[1]
|
||||||
|
self.node_n[ll[0]]=ll[2]
|
||||||
|
self.node_z[ll[0]]=ll[3]
|
||||||
|
l=self.meshfile.readline()
|
||||||
|
|
||||||
|
|
||||||
|
def next(self):
|
||||||
|
# This reads the next timestep and populates the variables.
|
||||||
|
# Reset all of the variables
|
||||||
|
self.time=0.0
|
||||||
|
self.year=0
|
||||||
|
self.xvel=[]
|
||||||
|
self.yvel=[]
|
||||||
|
self.zvel=[]
|
||||||
|
self.depth=[]
|
||||||
|
self.elevation=[]
|
||||||
|
|
||||||
|
# Add in an entry to fill position 0. Important since RMA files start numbering nodes from 1.
|
||||||
|
self.xvel.append(-999)
|
||||||
|
self.yvel.append(-999)
|
||||||
|
self.zvel.append(-999)
|
||||||
|
self.depth.append(-999)
|
||||||
|
self.elevation.append(-999)
|
||||||
|
|
||||||
|
if self.type==b'RMA2 ':
|
||||||
|
# WRITE(IRMAFM) TETT,NP,IYRR,((VEL(J,K),J=1,3),K=1,NP),(WSEL(J),J=1,NP),(VDOT(3,K),K=1,NP)
|
||||||
|
t=self.file.read(12)
|
||||||
|
if t:
|
||||||
|
a=unpack('fii',t)
|
||||||
|
self.time=a[0]
|
||||||
|
np=int(a[1])
|
||||||
|
self.year=a[2]
|
||||||
|
if (np!=self.num_nodes):
|
||||||
|
print ("Warning - NP (%d) on this timestep does not match header (%d)" % (np,self.num_nodes))
|
||||||
|
b=unpack('%df' % 5*np, self.file.read(20*np))
|
||||||
|
i=1
|
||||||
|
while i<=np:
|
||||||
|
self.xvel.append(b[0+(i-1)*3])
|
||||||
|
self.yvel.append(b[1+(i-1)*3])
|
||||||
|
self.depth.append(b[2+(i-1)*3])
|
||||||
|
self.elevation.append(b[np*3+(i-1)])
|
||||||
|
i=i+1
|
||||||
|
|
||||||
|
if self.type==b'RMA11 ':
|
||||||
|
self.constit=[]
|
||||||
|
c=0
|
||||||
|
# Start at zero to leave an empty array space. Constits numbered 1 .. num_constits
|
||||||
|
while c<=self.num_constits:
|
||||||
|
self.constit.append([])
|
||||||
|
# Put a null into the 0 position so that RMA node numbers are in the same numbered array position.
|
||||||
|
self.constit[c].append(-999)
|
||||||
|
c=c+1
|
||||||
|
# READ(file1,END=100) TETT1,NQAL,NP,IYRR, ((VEL(K,J),J=1,NP),K=1,3), (wd(j),j=1,np), (wsel(j),j=1,np), ((TCON1(K,J),J=1,NP),K=1,NQAL-5)
|
||||||
|
t=self.file.read(16)
|
||||||
|
if t:
|
||||||
|
a=unpack('fiii',t)
|
||||||
|
self.time=a[0]
|
||||||
|
nqal=int(a[1])
|
||||||
|
np=int(a[2])
|
||||||
|
self.year=a[3]
|
||||||
|
if ((nqal-5)!=(self.num_constits)):
|
||||||
|
print ("Warning - NQAL-5 (%d) on this timestep does not match header (%d)" % (nqal-5,self.num_constits))
|
||||||
|
if (np!=self.num_nodes):
|
||||||
|
print ("Warning - NP (%d) on this timestep does not match header (%d)" % (np,self.num_nodes))
|
||||||
|
b=unpack('%df' % nqal*np, self.file.read(4*nqal*np))
|
||||||
|
i=1
|
||||||
|
while i<=np:
|
||||||
|
|
||||||
|
self.xvel.append(b[0+(i-1)*3])
|
||||||
|
self.yvel.append(b[1+(i-1)*3])
|
||||||
|
self.zvel.append(b[2+(i-1)*3])
|
||||||
|
self.depth.append(b[np*3+(i-1)])
|
||||||
|
self.elevation.append(b[np*4+(i-1)])
|
||||||
|
c=1
|
||||||
|
while c<=self.num_constits:
|
||||||
|
self.constit[c].append(b[np*((c-1)+5)+(i-1)])
|
||||||
|
c=c+1
|
||||||
|
i=i+1
|
||||||
|
|
||||||
|
|
||||||
|
if len(self.xvel)==1:
|
||||||
|
# Note that this is a 1 now as we've filled the zero array position
|
||||||
|
return False
|
||||||
|
else:
|
||||||
|
return True
|
||||||
|
|
||||||
@ -0,0 +1,199 @@
|
|||||||
|
from struct import *
|
||||||
|
from pylab import *
|
||||||
|
import sys
|
||||||
|
|
||||||
|
|
||||||
|
# Updated 10/11/15 BMM : Added mesh.
|
||||||
|
# Updated 10/11/15 MD : Added dictionnary initialisation in mesh.
|
||||||
|
|
||||||
|
class rma:
|
||||||
|
def __init__(self):
|
||||||
|
self.file = 'not opened yet'
|
||||||
|
|
||||||
|
# May want to do some other things here later
|
||||||
|
|
||||||
|
def open(self, filename):
|
||||||
|
self.file = open(('%s.rma' % (filename)), 'rb')
|
||||||
|
self.header = self.file.read(1000).decode("utf-8")
|
||||||
|
self.type = self.header[0:10]
|
||||||
|
self.title = self.header[100:172]
|
||||||
|
self.geometry = self.header[200:300]
|
||||||
|
self.num_nodes = int(self.header[40:50])
|
||||||
|
self.num_elements = int(self.header[50:60])
|
||||||
|
if self.type == 'RMA11 ':
|
||||||
|
self.num_constits = int(self.header[60:70])
|
||||||
|
if len(self.header[80:90].strip()) == 0:
|
||||||
|
self.num_sedlayers = 0
|
||||||
|
else:
|
||||||
|
self.num_sedlayers = int(self.header[80:90])
|
||||||
|
self.constit_name = []
|
||||||
|
self.constit_name.append("NULL")
|
||||||
|
i = 1
|
||||||
|
print(self.num_constits)
|
||||||
|
print(self.header[300:1000])
|
||||||
|
while i <= self.num_constits:
|
||||||
|
# print self.header[300:400]
|
||||||
|
self.constit_name.append(self.header[300 + (i - 1) * 8:308 + (i - 1) * 8])
|
||||||
|
if self.header[300 + (i - 1) * 8:308 + (i - 1) * 8] == " SSED ":
|
||||||
|
self.constit_name.append(" BSHEAR")
|
||||||
|
self.constit_name.append("BedThick")
|
||||||
|
j = 1
|
||||||
|
print(self.num_sedlayers)
|
||||||
|
while j <= self.num_sedlayers:
|
||||||
|
self.constit_name.append(" L%dThick" % j)
|
||||||
|
j = j + 1
|
||||||
|
i = i + 1
|
||||||
|
# print i
|
||||||
|
|
||||||
|
# print self.num_constits
|
||||||
|
# print i
|
||||||
|
# if self.num_sedlayers > 0:
|
||||||
|
# self.num_constits=self.num_constits+2+self.num_sedlayers
|
||||||
|
|
||||||
|
# Header format in RMA2
|
||||||
|
|
||||||
|
# HEADER(1:10) ='RMA2 '
|
||||||
|
# HEADER(11:20)=DATEC = Date of run
|
||||||
|
# HEADER(21:30)=TIMEC = Time of run
|
||||||
|
# HEADER(31:40)=ZONEC = Time zone
|
||||||
|
# HEADER(41:50)=NP = Number of nodes
|
||||||
|
# HEADER(51:60)=NE = Number of elements
|
||||||
|
# HEADER(101:172)=TITLE = Title line
|
||||||
|
# HEADER(201:300)=FNAME = File name of binary geometry
|
||||||
|
|
||||||
|
# Header format in RMA11
|
||||||
|
# HEADER(1:10) - Model
|
||||||
|
# HEADER(11:20) - DATEC of model runtime
|
||||||
|
# HEADER(21:30) - TIMEC of model runtime
|
||||||
|
# HEADER(31:40) - ZONEC of model runtime
|
||||||
|
# HEADER(41:90) - '(5I10)' NP,NE,NQAL,IGS,LGS or '(5I10)' NP,NE,NQAL,ISEDS,NLAYT
|
||||||
|
# HEADER(101:172) - TITLE
|
||||||
|
# HEADER(301:540) - '(30A8)' CLABL
|
||||||
|
# HEADER(201:248) - FNAMD directory of the geometry
|
||||||
|
# HEADER(251:298) - FNAM2 filename of the geometry
|
||||||
|
|
||||||
|
def mesh(self, filename):
|
||||||
|
self.meshfile = open(('%s.rm1' % (filename)), 'r')
|
||||||
|
l = self.meshfile.readline()
|
||||||
|
|
||||||
|
while l[0:5] != ' 9999' and len(l) != 5:
|
||||||
|
l = self.meshfile.readline()
|
||||||
|
l = self.meshfile.readline()
|
||||||
|
self.node_e = {}
|
||||||
|
self.node_n = {}
|
||||||
|
self.node_z = {}
|
||||||
|
while l[0:10] != ' 9999' and len(l) != 10:
|
||||||
|
ll = l.split()
|
||||||
|
self.node_e[ll[0]] = ll[1]
|
||||||
|
self.node_n[ll[0]] = ll[2]
|
||||||
|
self.node_z[ll[0]] = ll[3]
|
||||||
|
l = self.meshfile.readline
|
||||||
|
|
||||||
|
def next(self):
|
||||||
|
# This reads the next timestep and populates the variables.
|
||||||
|
# Reset all of the variables
|
||||||
|
self.time = 0.0
|
||||||
|
self.year = 0
|
||||||
|
self.xvel = []
|
||||||
|
self.yvel = []
|
||||||
|
self.zvel = []
|
||||||
|
self.depth = []
|
||||||
|
self.elevation = []
|
||||||
|
self.temperature = []
|
||||||
|
self.salinity = []
|
||||||
|
self.sussed = []
|
||||||
|
|
||||||
|
# Add in an entry to fill position 0. Important since RMA files start numbering nodes from 1.
|
||||||
|
self.xvel.append(-999)
|
||||||
|
self.yvel.append(-999)
|
||||||
|
self.zvel.append(-999)
|
||||||
|
self.depth.append(-999)
|
||||||
|
self.elevation.append(-999)
|
||||||
|
self.temperature.append(-999)
|
||||||
|
self.salinity.append(-999)
|
||||||
|
self.sussed.append(-999)
|
||||||
|
|
||||||
|
if self.type == 'RMA2 ':
|
||||||
|
# WRITE(IRMAFM) TETT,NP,IYRR,((VEL(J,K),J=1,3),K=1,NP),(WSEL(J),J=1,NP),(VDOT(3,K),K=1,NP)
|
||||||
|
t = self.file.read(12)
|
||||||
|
if t:
|
||||||
|
a = unpack('fii', t)
|
||||||
|
self.time = a[0]
|
||||||
|
np = int(a[1])
|
||||||
|
self.year = a[2]
|
||||||
|
if (np != self.num_nodes):
|
||||||
|
print("Warning - NP (%d) on this timestep does not match header (%d)" % (np, self.num_nodes))
|
||||||
|
b = unpack('%df' % 5 * np, self.file.read(20 * np))
|
||||||
|
tempA = [(x - 1) * 3 for x in range(1, np + 1)]
|
||||||
|
tempB = [np * 3 + (x - 1) for x in range(1, np + 1)]
|
||||||
|
self.xvel.extend([b[i] for i in tempA])
|
||||||
|
self.yvel.extend([b[i + 1] for i in tempA])
|
||||||
|
self.depth.extend([b[i + 2] for i in tempA])
|
||||||
|
self.elevation.extend([b[i] for i in tempB])
|
||||||
|
|
||||||
|
if self.type == 'RMA11 ':
|
||||||
|
self.constit = []
|
||||||
|
c = 0
|
||||||
|
# Start at zero to leave an empty array space. Constits numbered 1 .. num_constits
|
||||||
|
while c <= self.num_constits:
|
||||||
|
self.constit.append([])
|
||||||
|
# Put a null into the 0 position so that RMA node numbers are in the same numbered array position.
|
||||||
|
self.constit[c].append(-999)
|
||||||
|
c = c + 1
|
||||||
|
# READ(file1,END=100) TETT1,NQAL,NP,IYRR, ((VEL(K,J),J=1,NP),K=1,3), (wd(j),j=1,np), (wsel(j),j=1,np), ((TCON1(K,J),J=1,NP),K=1,NQAL-5)
|
||||||
|
t = self.file.read(16)
|
||||||
|
if t:
|
||||||
|
a = unpack('fiii', t)
|
||||||
|
self.time = a[0]
|
||||||
|
nqal = int(a[1])
|
||||||
|
np = int(a[2])
|
||||||
|
self.year = a[3]
|
||||||
|
if ((nqal - 5) != (self.num_constits)):
|
||||||
|
print("Warning - NQAL-5 (%d) on this timestep does not match header (%d)" % (
|
||||||
|
nqal - 5, self.num_constits))
|
||||||
|
if (np != self.num_nodes):
|
||||||
|
print("Warning - NP (%d) on this timestep does not match header (%d)" % (np, self.num_nodes))
|
||||||
|
b = unpack('%df' % nqal * np, self.file.read(4 * nqal * np))
|
||||||
|
|
||||||
|
tempA = [(x - 1) * 3 for x in range(1, np + 1)]
|
||||||
|
tempB = [np * 3 + (x - 1) for x in range(1, np + 1)]
|
||||||
|
tempC = [np * 4 + (x - 1) for x in range(1, np + 1)]
|
||||||
|
self.xvel.extend([b[i] for i in tempA])
|
||||||
|
self.yvel.extend([b[i + 1] for i in tempA])
|
||||||
|
self.zvel.extend([b[i + 2] for i in tempA])
|
||||||
|
self.depth.extend([b[i] for i in tempB])
|
||||||
|
self.elevation.extend([b[i] for i in tempC])
|
||||||
|
for c in range(1, self.num_constits + 1):
|
||||||
|
(self.constit[c].extend([b[np * ((c - 1) + 5) + (x - 1)] for x in range(1, np + 1)]))
|
||||||
|
if self.type == 'RMA10 ':
|
||||||
|
# WRITE(IRMAFM) TETT,NP,NDF,NE,IYRR,((VSING(K,J),K=1,NDF),VVEL(J),WSLL(J),J=1,NP),(DFCT(J),J=1,NE),(VSING(7,J),J=1,NP)
|
||||||
|
# WRITE(IRMAFM) TETT,NP,IYRR,((VEL(J,K),J=1,3),K=1,NP),(WSEL(J),J=1,NP),(VDOT(3,K),K=1,NP)
|
||||||
|
t = self.file.read(20)
|
||||||
|
if t:
|
||||||
|
a = unpack('fiiii', t)
|
||||||
|
self.time = a[0]
|
||||||
|
np = a[1]
|
||||||
|
ndf = 6
|
||||||
|
ne = a[3]
|
||||||
|
self.year = a[4]
|
||||||
|
if (np != self.num_nodes):
|
||||||
|
print("Warning - NP1 (%d) on this timestep does not match header (%d)" % (np, self.num_nodes))
|
||||||
|
tempRead = np * (3 + ndf) + ne
|
||||||
|
b = unpack('%df' % tempRead, self.file.read(4 * tempRead))
|
||||||
|
i = 1
|
||||||
|
while i <= np:
|
||||||
|
self.xvel.append(b[0 + (i - 1) * 8])
|
||||||
|
self.yvel.append(b[1 + (i - 1) * 8])
|
||||||
|
self.depth.append(b[2 + (i - 1) * 8])
|
||||||
|
self.salinity.append(b[3 + (i - 1) * 8])
|
||||||
|
self.temperature.append(b[4 + (i - 1) * 8])
|
||||||
|
self.sussed.append(b[5 + (i - 1) * 8])
|
||||||
|
self.zvel.append(b[6 + (i - 1) * 8])
|
||||||
|
self.elevation.append(b[7 + (i - 1) * 8])
|
||||||
|
i = i + 1
|
||||||
|
|
||||||
|
if len(self.xvel) == 1:
|
||||||
|
# Note that this is a 1 now as we've filled the zero array position
|
||||||
|
return False
|
||||||
|
else:
|
||||||
|
return True
|
||||||
@ -0,0 +1 @@
|
|||||||
|
from .pyrma import loadMesh, point
|
||||||
@ -0,0 +1,54 @@
|
|||||||
|
# -*- coding: utf-8 -*-
|
||||||
|
"""
|
||||||
|
Created on Tue Mar 24 19:02:20 2020
|
||||||
|
|
||||||
|
@author: z5025317
|
||||||
|
"""
|
||||||
|
|
||||||
|
#load existing tgr time series boundary, raise by 1m and output a new tgr file
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#Load packages
|
||||||
|
#==========================================================#
|
||||||
|
import numpy as np
|
||||||
|
import os
|
||||||
|
import pandas as pd
|
||||||
|
import glob
|
||||||
|
|
||||||
|
os.chdir('C:/Users/z5025317/UNSW/Danial Khojasteh - HEMIP/RMA_result_explorer_code')
|
||||||
|
River = 'Shoalhaven'
|
||||||
|
|
||||||
|
tgr_csv_folder_path = 'C:/Users/z5025317/UNSW/Danial Khojasteh - HEMIP/Models/' + River + '/02_Input/Boundary_conditions/Tide/'
|
||||||
|
|
||||||
|
filenames = glob.glob(tgr_csv_folder_path + '*05.csv')
|
||||||
|
for tgr_csv_name in filenames:
|
||||||
|
print (tgr_csv_name)
|
||||||
|
#tgr_csv_name = 'R45_2008_existing_run_tgr.csv'
|
||||||
|
|
||||||
|
Waterlevel_increases = [0.25, 0.5, 1, 2] # in m AHD
|
||||||
|
|
||||||
|
for Waterlevel_increase in Waterlevel_increases:
|
||||||
|
tgr_outname = tgr_csv_folder_path + os.path.basename(tgr_csv_name)[:-4] + '_plus_SLR_' + str(Waterlevel_increase) + 'm'
|
||||||
|
|
||||||
|
Full_df = pd.read_csv(tgr_csv_name ,header= 0, parse_dates = False)
|
||||||
|
Full_df.columns = ['1','2','3','4']
|
||||||
|
df = Full_df #.loc[1:2000]
|
||||||
|
# str(df['2'][1500].astype(int))
|
||||||
|
|
||||||
|
# RMA2: create input file
|
||||||
|
|
||||||
|
fq = open(
|
||||||
|
os.path.join(tgr_csv_folder_path, tgr_outname + '.tgr'),
|
||||||
|
'w')
|
||||||
|
|
||||||
|
fq.write('TT Manning base case tide + SLR of ' + str(Waterlevel_increase) + 'm \n')
|
||||||
|
#fq.write('{:<5}{:>3}{:>8}{:>8}\n'.format('CLH', '', '2', '2008'))
|
||||||
|
fq.write('{:<5}{:>3}{:>8}{:>8}\n'.format('CLH', '', int(df['3'][0]), int(df['4'][0])))
|
||||||
|
for i in range(1,len(df)-1,1):
|
||||||
|
# For each new element
|
||||||
|
fq.write('{:<5}{:>3}{:>8}{:>8}\n'.format(df['1'][i], df['2'][i], df['3'][i], str(np.round(df['4'][i].astype(float)+ Waterlevel_increase,3))))
|
||||||
|
fq.write('ENDDATA')
|
||||||
|
fq.close()
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -0,0 +1,49 @@
|
|||||||
|
# -*- coding: utf-8 -*-
|
||||||
|
"""
|
||||||
|
Created on Tue Mar 24 19:02:20 2020
|
||||||
|
|
||||||
|
@author: z5025317
|
||||||
|
"""
|
||||||
|
|
||||||
|
#load existing tgr time series boundary, raise by 1m and output a new tgr file
|
||||||
|
|
||||||
|
#==========================================================#
|
||||||
|
#Load packages
|
||||||
|
#==========================================================#
|
||||||
|
import numpy as np
|
||||||
|
import os
|
||||||
|
import pandas as pd
|
||||||
|
import glob
|
||||||
|
|
||||||
|
os.chdir('C:/Users/z5025317/UNSW/Danial Khojasteh - HEMIP/RMA_result_explorer_code')
|
||||||
|
year = '2017'
|
||||||
|
|
||||||
|
Ocean_gauges_folder = 'J:/Project/wrl2018064 Fisheries RAP/04_Working/05_Modelling/RMA/HEMIP/Global_HEMIP_Data/MHL_Gauge_Data/20200409_Recieved/Open_ocean/'
|
||||||
|
filenames = glob.glob(Ocean_gauges_folder + '*.csv')
|
||||||
|
filenames = filenames[,[0,1,3]]
|
||||||
|
timestep = 0
|
||||||
|
for tgr_csv_name in filenames:
|
||||||
|
print (tgr_csv_name)
|
||||||
|
tgr_csv_name = filenames[3]
|
||||||
|
tgr_outname = Ocean_gauges_folder + os.path.basename(tgr_csv_name)[:-4] + '_2' + year
|
||||||
|
|
||||||
|
Full_df = pd.read_csv(tgr_csv_name ,header= 0, skiprows= 30, parse_dates = True)
|
||||||
|
Full_df.index = pd.to_datetime(Full_df.Date, format = '%d/%m/%Y') + pd.to_timedelta(Full_df.Time, unit='h')
|
||||||
|
Full_df = Full_df.iloc[:,[-2]]
|
||||||
|
Full_df.columns = ['WL[AHD]']
|
||||||
|
Full_df = Full_df.loc[(Full_df.index >= year + '-01-01 00:00:00') & (Full_df.index <= str(np.int(year)+1) + '-01-01 00:00:00')]
|
||||||
|
# str(df['2'][1500].astype(int))
|
||||||
|
|
||||||
|
# RMA2: create input file
|
||||||
|
fq = open(
|
||||||
|
os.path.join(Ocean_gauges_folder, tgr_outname + '.tgr'),
|
||||||
|
'w')
|
||||||
|
|
||||||
|
fq.write('TT MHL tide for ' + os.path.basename(tgr_csv_name)+ ' ' + year + '\n')
|
||||||
|
fq.write('{:<5}{:>3}{:>8}{:>8}\n'.format('CL', '', '2', year))
|
||||||
|
#fq.write('{:<5}{:>3}{:>8}{:>8}\n'.format('CL', '', int(df['3'][0]), int(df['4'][0])))
|
||||||
|
for i in range(1,len(Full_df),1):
|
||||||
|
# For each new element
|
||||||
|
fq.write('{:<5}{:>3}{:>8}{:>8}\n'.format('HD', str(np.int(Full_df.index[i-1].strftime('%j'))), str(np.round((np.float(Full_df.index[i-1].strftime('%M'))+ np.float(Full_df.index[i-1].strftime('%H'))*60) /60,2)), str(np.round(np.float(Full_df['WL[AHD]'][i-1]),3))))
|
||||||
|
fq.write('ENDDATA')
|
||||||
|
fq.close()
|
||||||
Loading…
Reference in New Issue