[WIP] add first iteration and incomplete packaging files generated with pyscaffold
davidovitch
9 years ago
parent
d0b4af3bdc
commit
d73621af72
@ -0,0 +1,8 @@
|
||||
==========
|
||||
Developers
|
||||
==========
|
||||
|
||||
* Per A. Brodtkorb
|
||||
* Georg Lindgren
|
||||
* David Verelst
|
||||
|
||||
@ -0,0 +1,11 @@
|
||||
=========
|
||||
Changelog
|
||||
=========
|
||||
|
||||
Version 0.1
|
||||
===========
|
||||
|
||||
- Feature A added
|
||||
- FIX: nasty bug #1729 fixed
|
||||
- add your changes here!
|
||||
|
||||
@ -0,0 +1,17 @@
|
||||
WAFO is free software; you can redistribute it and/or modify it under the terms
|
||||
of the GNU General Public License (GPL, http://www.gnu.org/copyleft/gpl.html)
|
||||
as published by the Free Software Foundation; either version 3 of the License,
|
||||
or (at your option) any later version.
|
||||
|
||||
WAFO is distributed in the hope that it will be useful, but WITHOUT ANY
|
||||
WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A
|
||||
PARTICULAR PURPOSE.
|
||||
|
||||
A small number of files (listed in COPYRIGHTS) are distributed under the
|
||||
GNU LESSER GENERAL PUBLIC LICENSE (LGPL, http://www.gnu.org/licenses/lgpl.html);
|
||||
either version 3 of the License, or (at your option) any later version.
|
||||
|
||||
See the GNU General Public License for more details http://www.gnu.org/licenses/
|
||||
|
||||
We encourage you to submit new code for possible inclusion in future versions of
|
||||
WAFO.
|
||||
@ -0,0 +1,74 @@
|
||||
==========================================
|
||||
Wave Analysis for Fatigue and Oceanography
|
||||
==========================================
|
||||
|
||||
Description
|
||||
===========
|
||||
|
||||
WAFO is a toolbox Python routines for statistical analysis and simulation of
|
||||
random waves and random loads. WAFO is freely redistributable software, see WAFO
|
||||
icence, cf. the GNU General Public License (GPL) and contain tools for:
|
||||
|
||||
Fatigue Analysis
|
||||
----------------
|
||||
-Fatigue life prediction for random loads
|
||||
-Theoretical density of rainflow cycles
|
||||
|
||||
Sea modelling
|
||||
-------------
|
||||
-Simulation of linear and non-linear Gaussian waves
|
||||
-Estimation of seamodels (spectrums)
|
||||
-Joint wave height, wave steepness, wave period distributions
|
||||
|
||||
Statistics
|
||||
------------
|
||||
-Extreme value analysis
|
||||
-Kernel density estimation
|
||||
-Hidden markov models
|
||||
|
||||
WAFO consists of several subpackages and classes with short descriptions given
|
||||
below.
|
||||
|
||||
Classes:
|
||||
TimeSeries - Data analysis of time series. Example: extraction of
|
||||
turning points, estimation of spectrum and covariance function.
|
||||
Estimation transformation used in transformed Gaussian model.
|
||||
CovData - Computation of spectral functions, linear
|
||||
and non-linear time series simulation.
|
||||
SpecData - Computation of spectral moments and covariance functions, linear
|
||||
and non-linear time series simulation.
|
||||
Ex: common spectra implemented, directional spectra,
|
||||
bandwidth measures, exact distributions for wave characteristics.
|
||||
|
||||
CyclePairs - Cycle counting, discretization, and crossings, calculation of
|
||||
damage. Simulation of discrete Markov chains, switching Markov
|
||||
chains, harmonic oscillator. Ex: Rainflow cycles and matrix,
|
||||
discretization of loads. Damage of a rainflow count or
|
||||
matrix, damage matrix, S-N plot.
|
||||
|
||||
|
||||
Subpackages:
|
||||
TRANSFORM - Modelling with linear or transformed Gaussian waves. Ex:
|
||||
STATS - Statistical tools and extreme-value distributions.
|
||||
Ex: generation of random numbers, estimation of parameters,
|
||||
evaluation of pdf and cdf
|
||||
KDETOOLS - Kernel-density estimation.
|
||||
MISC - Miscellaneous routines.
|
||||
DOCS - Documentation of toolbox, definitions. An overview is given
|
||||
in the routine wafomenu.
|
||||
DATA - Measurements from marine applications.
|
||||
|
||||
WAFO homepage: <http://www.maths.lth.se/matstat/wafo/>
|
||||
On the WAFO home page you will find:
|
||||
- The WAFO Tutorial
|
||||
- New versions of WAFO to download.
|
||||
- Reported bugs.
|
||||
- List of publications related to WAFO.
|
||||
|
||||
|
||||
Note
|
||||
====
|
||||
|
||||
This project has been set up using PyScaffold 2.4.2. For details and usage
|
||||
information on PyScaffold see http://pyscaffold.readthedocs.org/.
|
||||
|
||||
@ -0,0 +1,177 @@
|
||||
# Makefile for Sphinx documentation
|
||||
#
|
||||
|
||||
# You can set these variables from the command line.
|
||||
SPHINXOPTS =
|
||||
SPHINXBUILD = sphinx-build
|
||||
PAPER =
|
||||
BUILDDIR = _build
|
||||
|
||||
# User-friendly check for sphinx-build
|
||||
ifeq ($(shell which $(SPHINXBUILD) >/dev/null 2>&1; echo $?), 1)
|
||||
$(error The '$(SPHINXBUILD)' command was not found. Make sure you have Sphinx installed, then set the SPHINXBUILD environment variable to point to the full path of the '$(SPHINXBUILD)' executable. Alternatively you can add the directory with the executable to your PATH. If you don't have Sphinx installed, grab it from http://sphinx-doc.org/)
|
||||
endif
|
||||
|
||||
# Internal variables.
|
||||
PAPEROPT_a4 = -D latex_paper_size=a4
|
||||
PAPEROPT_letter = -D latex_paper_size=letter
|
||||
ALLSPHINXOPTS = -d $(BUILDDIR)/doctrees $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) .
|
||||
# the i18n builder cannot share the environment and doctrees with the others
|
||||
I18NSPHINXOPTS = $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) .
|
||||
|
||||
.PHONY: help clean html dirhtml singlehtml pickle json htmlhelp qthelp devhelp epub latex latexpdf text man changes linkcheck doctest gettext
|
||||
|
||||
help:
|
||||
@echo "Please use \`make <target>' where <target> is one of"
|
||||
@echo " html to make standalone HTML files"
|
||||
@echo " dirhtml to make HTML files named index.html in directories"
|
||||
@echo " singlehtml to make a single large HTML file"
|
||||
@echo " pickle to make pickle files"
|
||||
@echo " json to make JSON files"
|
||||
@echo " htmlhelp to make HTML files and a HTML help project"
|
||||
@echo " qthelp to make HTML files and a qthelp project"
|
||||
@echo " devhelp to make HTML files and a Devhelp project"
|
||||
@echo " epub to make an epub"
|
||||
@echo " latex to make LaTeX files, you can set PAPER=a4 or PAPER=letter"
|
||||
@echo " latexpdf to make LaTeX files and run them through pdflatex"
|
||||
@echo " latexpdfja to make LaTeX files and run them through platex/dvipdfmx"
|
||||
@echo " text to make text files"
|
||||
@echo " man to make manual pages"
|
||||
@echo " texinfo to make Texinfo files"
|
||||
@echo " info to make Texinfo files and run them through makeinfo"
|
||||
@echo " gettext to make PO message catalogs"
|
||||
@echo " changes to make an overview of all changed/added/deprecated items"
|
||||
@echo " xml to make Docutils-native XML files"
|
||||
@echo " pseudoxml to make pseudoxml-XML files for display purposes"
|
||||
@echo " linkcheck to check all external links for integrity"
|
||||
@echo " doctest to run all doctests embedded in the documentation (if enabled)"
|
||||
|
||||
clean:
|
||||
rm -rf $(BUILDDIR)/*
|
||||
|
||||
html:
|
||||
$(SPHINXBUILD) -b html $(ALLSPHINXOPTS) $(BUILDDIR)/html
|
||||
@echo
|
||||
@echo "Build finished. The HTML pages are in $(BUILDDIR)/html."
|
||||
|
||||
dirhtml:
|
||||
$(SPHINXBUILD) -b dirhtml $(ALLSPHINXOPTS) $(BUILDDIR)/dirhtml
|
||||
@echo
|
||||
@echo "Build finished. The HTML pages are in $(BUILDDIR)/dirhtml."
|
||||
|
||||
singlehtml:
|
||||
$(SPHINXBUILD) -b singlehtml $(ALLSPHINXOPTS) $(BUILDDIR)/singlehtml
|
||||
@echo
|
||||
@echo "Build finished. The HTML page is in $(BUILDDIR)/singlehtml."
|
||||
|
||||
pickle:
|
||||
$(SPHINXBUILD) -b pickle $(ALLSPHINXOPTS) $(BUILDDIR)/pickle
|
||||
@echo
|
||||
@echo "Build finished; now you can process the pickle files."
|
||||
|
||||
json:
|
||||
$(SPHINXBUILD) -b json $(ALLSPHINXOPTS) $(BUILDDIR)/json
|
||||
@echo
|
||||
@echo "Build finished; now you can process the JSON files."
|
||||
|
||||
htmlhelp:
|
||||
$(SPHINXBUILD) -b htmlhelp $(ALLSPHINXOPTS) $(BUILDDIR)/htmlhelp
|
||||
@echo
|
||||
@echo "Build finished; now you can run HTML Help Workshop with the" \
|
||||
".hhp project file in $(BUILDDIR)/htmlhelp."
|
||||
|
||||
qthelp:
|
||||
$(SPHINXBUILD) -b qthelp $(ALLSPHINXOPTS) $(BUILDDIR)/qthelp
|
||||
@echo
|
||||
@echo "Build finished; now you can run "qcollectiongenerator" with the" \
|
||||
".qhcp project file in $(BUILDDIR)/qthelp, like this:"
|
||||
@echo "# qcollectiongenerator $(BUILDDIR)/qthelp/pywafo.qhcp"
|
||||
@echo "To view the help file:"
|
||||
@echo "# assistant -collectionFile $(BUILDDIR)/qthelp/pywafo.qhc"
|
||||
|
||||
devhelp:
|
||||
$(SPHINXBUILD) -b devhelp $(ALLSPHINXOPTS) $(BUILDDIR)/devhelp
|
||||
@echo
|
||||
@echo "Build finished."
|
||||
@echo "To view the help file:"
|
||||
@echo "# mkdir -p $HOME/.local/share/devhelp/pywafo"
|
||||
@echo "# ln -s $(BUILDDIR)/devhelp $HOME/.local/share/devhelp/pywafo"
|
||||
@echo "# devhelp"
|
||||
|
||||
epub:
|
||||
$(SPHINXBUILD) -b epub $(ALLSPHINXOPTS) $(BUILDDIR)/epub
|
||||
@echo
|
||||
@echo "Build finished. The epub file is in $(BUILDDIR)/epub."
|
||||
|
||||
latex:
|
||||
$(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex
|
||||
@echo
|
||||
@echo "Build finished; the LaTeX files are in $(BUILDDIR)/latex."
|
||||
@echo "Run \`make' in that directory to run these through (pdf)latex" \
|
||||
"(use \`make latexpdf' here to do that automatically)."
|
||||
|
||||
latexpdf:
|
||||
$(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex
|
||||
@echo "Running LaTeX files through pdflatex..."
|
||||
$(MAKE) -C $(BUILDDIR)/latex all-pdf
|
||||
@echo "pdflatex finished; the PDF files are in $(BUILDDIR)/latex."
|
||||
|
||||
latexpdfja:
|
||||
$(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex
|
||||
@echo "Running LaTeX files through platex and dvipdfmx..."
|
||||
$(MAKE) -C $(BUILDDIR)/latex all-pdf-ja
|
||||
@echo "pdflatex finished; the PDF files are in $(BUILDDIR)/latex."
|
||||
|
||||
text:
|
||||
$(SPHINXBUILD) -b text $(ALLSPHINXOPTS) $(BUILDDIR)/text
|
||||
@echo
|
||||
@echo "Build finished. The text files are in $(BUILDDIR)/text."
|
||||
|
||||
man:
|
||||
$(SPHINXBUILD) -b man $(ALLSPHINXOPTS) $(BUILDDIR)/man
|
||||
@echo
|
||||
@echo "Build finished. The manual pages are in $(BUILDDIR)/man."
|
||||
|
||||
texinfo:
|
||||
$(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo
|
||||
@echo
|
||||
@echo "Build finished. The Texinfo files are in $(BUILDDIR)/texinfo."
|
||||
@echo "Run \`make' in that directory to run these through makeinfo" \
|
||||
"(use \`make info' here to do that automatically)."
|
||||
|
||||
info:
|
||||
$(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo
|
||||
@echo "Running Texinfo files through makeinfo..."
|
||||
make -C $(BUILDDIR)/texinfo info
|
||||
@echo "makeinfo finished; the Info files are in $(BUILDDIR)/texinfo."
|
||||
|
||||
gettext:
|
||||
$(SPHINXBUILD) -b gettext $(I18NSPHINXOPTS) $(BUILDDIR)/locale
|
||||
@echo
|
||||
@echo "Build finished. The message catalogs are in $(BUILDDIR)/locale."
|
||||
|
||||
changes:
|
||||
$(SPHINXBUILD) -b changes $(ALLSPHINXOPTS) $(BUILDDIR)/changes
|
||||
@echo
|
||||
@echo "The overview file is in $(BUILDDIR)/changes."
|
||||
|
||||
linkcheck:
|
||||
$(SPHINXBUILD) -b linkcheck $(ALLSPHINXOPTS) $(BUILDDIR)/linkcheck
|
||||
@echo
|
||||
@echo "Link check complete; look for any errors in the above output " \
|
||||
"or in $(BUILDDIR)/linkcheck/output.txt."
|
||||
|
||||
doctest:
|
||||
$(SPHINXBUILD) -b doctest $(ALLSPHINXOPTS) $(BUILDDIR)/doctest
|
||||
@echo "Testing of doctests in the sources finished, look at the " \
|
||||
"results in $(BUILDDIR)/doctest/output.txt."
|
||||
|
||||
xml:
|
||||
$(SPHINXBUILD) -b xml $(ALLSPHINXOPTS) $(BUILDDIR)/xml
|
||||
@echo
|
||||
@echo "Build finished. The XML files are in $(BUILDDIR)/xml."
|
||||
|
||||
pseudoxml:
|
||||
$(SPHINXBUILD) -b pseudoxml $(ALLSPHINXOPTS) $(BUILDDIR)/pseudoxml
|
||||
@echo
|
||||
@echo "Build finished. The pseudo-XML files are in $(BUILDDIR)/pseudoxml."
|
||||
@ -0,0 +1,2 @@
|
||||
.. _authors:
|
||||
.. include:: ../AUTHORS.rst
|
||||
@ -0,0 +1,2 @@
|
||||
.. _changes:
|
||||
.. include:: ../CHANGES.rst
|
||||
@ -0,0 +1,238 @@
|
||||
# -*- coding: utf-8 -*-
|
||||
#
|
||||
# This file is execfile()d with the current directory set to its containing dir.
|
||||
#
|
||||
# Note that not all possible configuration values are present in this
|
||||
# autogenerated file.
|
||||
#
|
||||
# All configuration values have a default; values that are commented out
|
||||
# serve to show the default.
|
||||
|
||||
import sys
|
||||
import os
|
||||
import inspect
|
||||
from sphinx import apidoc
|
||||
|
||||
|
||||
__location__ = os.path.join(os.getcwd(), os.path.dirname(
|
||||
inspect.getfile(inspect.currentframe())))
|
||||
|
||||
package = "wafo"
|
||||
namespace = []
|
||||
namespace_pkg = ".".join([namespace[-1], package]) if namespace else package
|
||||
|
||||
# If extensions (or modules to document with autodoc) are in another directory,
|
||||
# add these directories to sys.path here. If the directory is relative to the
|
||||
# documentation root, use os.path.abspath to make it absolute, like shown here.
|
||||
# sys.path.insert(0, os.path.abspath('.'))
|
||||
|
||||
# -- General configuration -----------------------------------------------------
|
||||
|
||||
# If your documentation needs a minimal Sphinx version, state it here.
|
||||
# needs_sphinx = '1.0'
|
||||
|
||||
# Add any Sphinx extension module names here, as strings. They can be extensions
|
||||
# coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
|
||||
extensions = ['sphinx.ext.autodoc', 'sphinx.ext.intersphinx', 'sphinx.ext.todo',
|
||||
'sphinx.ext.autosummary', 'sphinx.ext.viewcode', 'sphinx.ext.coverage',
|
||||
'sphinx.ext.doctest', 'sphinx.ext.ifconfig', 'sphinx.ext.pngmath']
|
||||
|
||||
# Add any paths that contain templates here, relative to this directory.
|
||||
templates_path = ['_templates']
|
||||
|
||||
# The suffix of source filenames.
|
||||
source_suffix = '.rst'
|
||||
|
||||
# The encoding of source files.
|
||||
# source_encoding = 'utf-8-sig'
|
||||
|
||||
# The master toctree document.
|
||||
master_doc = 'index'
|
||||
|
||||
# General information about the project.
|
||||
project = u'pywafo'
|
||||
copyright = u'2015, davidovitch'
|
||||
|
||||
# The version info for the project you're documenting, acts as replacement for
|
||||
# |version| and |release|, also used in various other places throughout the
|
||||
# built documents.
|
||||
#
|
||||
# The short X.Y version.
|
||||
version = '' # Is set by calling `setup.py docs`
|
||||
# The full version, including alpha/beta/rc tags.
|
||||
release = '' # Is set by calling `setup.py docs`
|
||||
|
||||
# The language for content autogenerated by Sphinx. Refer to documentation
|
||||
# for a list of supported languages.
|
||||
# language = None
|
||||
|
||||
# There are two options for replacing |today|: either, you set today to some
|
||||
# non-false value, then it is used:
|
||||
# today = ''
|
||||
# Else, today_fmt is used as the format for a strftime call.
|
||||
# today_fmt = '%B %d, %Y'
|
||||
|
||||
# List of patterns, relative to source directory, that match files and
|
||||
# directories to ignore when looking for source files.
|
||||
exclude_patterns = ['_build']
|
||||
|
||||
# The reST default role (used for this markup: `text`) to use for all documents.
|
||||
# default_role = None
|
||||
|
||||
# If true, '()' will be appended to :func: etc. cross-reference text.
|
||||
# add_function_parentheses = True
|
||||
|
||||
# If true, the current module name will be prepended to all description
|
||||
# unit titles (such as .. function::).
|
||||
# add_module_names = True
|
||||
|
||||
# If true, sectionauthor and moduleauthor directives will be shown in the
|
||||
# output. They are ignored by default.
|
||||
# show_authors = False
|
||||
|
||||
# The name of the Pygments (syntax highlighting) style to use.
|
||||
pygments_style = 'sphinx'
|
||||
|
||||
# A list of ignored prefixes for module index sorting.
|
||||
# modindex_common_prefix = []
|
||||
|
||||
# If true, keep warnings as "system message" paragraphs in the built documents.
|
||||
# keep_warnings = False
|
||||
|
||||
|
||||
# -- Options for HTML output ---------------------------------------------------
|
||||
|
||||
# The theme to use for HTML and HTML Help pages. See the documentation for
|
||||
# a list of builtin themes.
|
||||
html_theme = 'alabaster'
|
||||
|
||||
# Theme options are theme-specific and customize the look and feel of a theme
|
||||
# further. For a list of options available for each theme, see the
|
||||
# documentation.
|
||||
# html_theme_options = {}
|
||||
|
||||
# Add any paths that contain custom themes here, relative to this directory.
|
||||
# html_theme_path = []
|
||||
|
||||
# The name for this set of Sphinx documents. If None, it defaults to
|
||||
# "<project> v<release> documentation".
|
||||
try:
|
||||
from namespace_pkg import __version__ as version
|
||||
except ImportError:
|
||||
pass
|
||||
else:
|
||||
release = version
|
||||
|
||||
# A shorter title for the navigation bar. Default is the same as html_title.
|
||||
# html_short_title = None
|
||||
|
||||
# The name of an image file (relative to this directory) to place at the top
|
||||
# of the sidebar.
|
||||
# html_logo = ""
|
||||
|
||||
# The name of an image file (within the static path) to use as favicon of the
|
||||
# docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32
|
||||
# pixels large.
|
||||
# html_favicon = None
|
||||
|
||||
# Add any paths that contain custom static files (such as style sheets) here,
|
||||
# relative to this directory. They are copied after the builtin static files,
|
||||
# so a file named "default.css" will overwrite the builtin "default.css".
|
||||
html_static_path = ['_static']
|
||||
|
||||
# If not '', a 'Last updated on:' timestamp is inserted at every page bottom,
|
||||
# using the given strftime format.
|
||||
# html_last_updated_fmt = '%b %d, %Y'
|
||||
|
||||
# If true, SmartyPants will be used to convert quotes and dashes to
|
||||
# typographically correct entities.
|
||||
# html_use_smartypants = True
|
||||
|
||||
# Custom sidebar templates, maps document names to template names.
|
||||
# html_sidebars = {}
|
||||
|
||||
# Additional templates that should be rendered to pages, maps page names to
|
||||
# template names.
|
||||
# html_additional_pages = {}
|
||||
|
||||
# If false, no module index is generated.
|
||||
# html_domain_indices = True
|
||||
|
||||
# If false, no index is generated.
|
||||
# html_use_index = True
|
||||
|
||||
# If true, the index is split into individual pages for each letter.
|
||||
# html_split_index = False
|
||||
|
||||
# If true, links to the reST sources are added to the pages.
|
||||
# html_show_sourcelink = True
|
||||
|
||||
# If true, "Created using Sphinx" is shown in the HTML footer. Default is True.
|
||||
# html_show_sphinx = True
|
||||
|
||||
# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True.
|
||||
# html_show_copyright = True
|
||||
|
||||
# If true, an OpenSearch description file will be output, and all pages will
|
||||
# contain a <link> tag referring to it. The value of this option must be the
|
||||
# base URL from which the finished HTML is served.
|
||||
# html_use_opensearch = ''
|
||||
|
||||
# This is the file name suffix for HTML files (e.g. ".xhtml").
|
||||
# html_file_suffix = None
|
||||
|
||||
# Output file base name for HTML help builder.
|
||||
htmlhelp_basename = 'wafo-doc'
|
||||
|
||||
|
||||
# -- Options for LaTeX output --------------------------------------------------
|
||||
|
||||
latex_elements = {
|
||||
# The paper size ('letterpaper' or 'a4paper').
|
||||
# 'papersize': 'letterpaper',
|
||||
|
||||
# The font size ('10pt', '11pt' or '12pt').
|
||||
# 'pointsize': '10pt',
|
||||
|
||||
# Additional stuff for the LaTeX preamble.
|
||||
# 'preamble': '',
|
||||
}
|
||||
|
||||
# Grouping the document tree into LaTeX files. List of tuples
|
||||
# (source start file, target name, title, author, documentclass [howto/manual]).
|
||||
latex_documents = [
|
||||
('index', 'user_guide.tex', u'pywafo Documentation',
|
||||
u'davidovitch', 'manual'),
|
||||
]
|
||||
|
||||
# The name of an image file (relative to this directory) to place at the top of
|
||||
# the title page.
|
||||
# latex_logo = ""
|
||||
|
||||
# For "manual" documents, if this is true, then toplevel headings are parts,
|
||||
# not chapters.
|
||||
# latex_use_parts = False
|
||||
|
||||
# If true, show page references after internal links.
|
||||
# latex_show_pagerefs = False
|
||||
|
||||
# If true, show URL addresses after external links.
|
||||
# latex_show_urls = False
|
||||
|
||||
# Documents to append as an appendix to all manuals.
|
||||
# latex_appendices = []
|
||||
|
||||
# If false, no module index is generated.
|
||||
# latex_domain_indices = True
|
||||
|
||||
# -- External mapping ------------------------------------------------------------
|
||||
python_version = '.'.join(map(str, sys.version_info[0:2]))
|
||||
intersphinx_mapping = {
|
||||
'sphinx': ('http://sphinx.pocoo.org', None),
|
||||
'python': ('http://docs.python.org/' + python_version, None),
|
||||
'matplotlib': ('http://matplotlib.sourceforge.net', None),
|
||||
'numpy': ('http://docs.scipy.org/doc/numpy', None),
|
||||
'sklearn': ('http://scikit-learn.org/stable', None),
|
||||
'pandas': ('http://pandas.pydata.org/pandas-docs/stable', None),
|
||||
'scipy': ('http://docs.scipy.org/doc/scipy/reference/', None),
|
||||
}
|
||||
@ -0,0 +1,45 @@
|
||||
======
|
||||
pywafo
|
||||
======
|
||||
|
||||
This is the documentation of **pywafo**.
|
||||
|
||||
.. note::
|
||||
|
||||
This is the main page of your project's `Sphinx <http://sphinx-doc.org/>`_
|
||||
documentation. It is formatted in `reStructuredText
|
||||
<http://sphinx-doc.org/rest.html>`__. Add additional pages by creating
|
||||
rst-files in ``docs`` and adding them to the `toctree
|
||||
<http://sphinx-doc.org/markup/toctree.html>`_ below. Use then
|
||||
`references <http://sphinx-doc.org/markup/inline.html>`__ in order to link
|
||||
them from this page, e.g. :ref:`authors <authors>` and :ref:`changes`.
|
||||
It is also possible to refer to the documentation of other Python packages
|
||||
with the `Python domain syntax
|
||||
<http://sphinx-doc.org/domains.html#the-python-domain>`__. By default you
|
||||
can reference the documentation of `Sphinx <http://sphinx.pocoo.org>`__,
|
||||
`Python <http://docs.python.org/>`__, `matplotlib
|
||||
<http://matplotlib.sourceforge.net>`__, `NumPy
|
||||
<http://docs.scipy.org/doc/numpy>`__, `Scikit-Learn
|
||||
<http://scikit-learn.org/stable>`__, `Pandas
|
||||
<http://pandas.pydata.org/pandas-docs/stable>`__, `SciPy
|
||||
<http://docs.scipy.org/doc/scipy/reference/>`__. You can add more by
|
||||
extending the ``intersphinx_mapping`` in your Sphinx's ``conf.py``.
|
||||
|
||||
Contents
|
||||
========
|
||||
|
||||
.. toctree::
|
||||
:maxdepth: 2
|
||||
|
||||
License <license>
|
||||
Authors <authors>
|
||||
Changelog <changes>
|
||||
Module Reference <api/modules>
|
||||
|
||||
|
||||
Indices and tables
|
||||
==================
|
||||
|
||||
* :ref:`genindex`
|
||||
* :ref:`modindex`
|
||||
* :ref:`search`
|
||||
@ -0,0 +1,7 @@
|
||||
.. _license:
|
||||
|
||||
=======
|
||||
License
|
||||
=======
|
||||
|
||||
.. literalinclude:: ../LICENSE.txt
|
||||
@ -0,0 +1,6 @@
|
||||
# Add your requirements here like:
|
||||
six
|
||||
numpy>=1.4
|
||||
numdifftools>=0.2
|
||||
scipy>=0.9
|
||||
|
||||
@ -0,0 +1,87 @@
|
||||
[metadata]
|
||||
name = wafo
|
||||
summary = Wave Analysis for Fatigue and Oceanography
|
||||
author = WAFO-group
|
||||
author-email = none
|
||||
license = GPLv3
|
||||
home-page = http://www.maths.lth.se/matstat/wafo/
|
||||
description-file = README.rst
|
||||
# Add here all kinds of additional classifiers as defined under
|
||||
# https://pypi.python.org/pypi?%3Aaction=list_classifiers
|
||||
classifiers = Development Status :: 4 - Beta,
|
||||
Programming Language :: Python,
|
||||
Programming Language :: Python :: 2.7,
|
||||
Programming Language :: Python :: 3,
|
||||
Programming Language :: Python :: 3.3,
|
||||
Programming Language :: Python :: 3.4,
|
||||
Environment :: Console,
|
||||
Intended Audience :: Education,
|
||||
Intended Audience :: Science/Research,
|
||||
License :: OSI Approved :: GPL License,
|
||||
Operating System :: OS Independent,
|
||||
Operating System :: POSIX :: Linux,
|
||||
Operating System :: Unix,
|
||||
Operating System :: MacOS,
|
||||
Operating System :: Microsoft :: Windows
|
||||
Topic :: Scientific/Engineering :: Mathematics
|
||||
|
||||
[entry_points]
|
||||
# Add here console scripts like:
|
||||
# console_scripts =
|
||||
# hello_world = wafo.module:function
|
||||
# as well as other entry_points.
|
||||
|
||||
|
||||
[files]
|
||||
# Add here 'data_files', 'packages' or 'namespace_packages'.
|
||||
# Additional data files are defined as key value pairs of source and target:
|
||||
packages =
|
||||
wafo
|
||||
# data_files =
|
||||
# share/wafo_docs = docs/*
|
||||
|
||||
[extras]
|
||||
# Add here additional requirements for extra features, like:
|
||||
# PDF =
|
||||
# ReportLab>=1.2
|
||||
# RXP
|
||||
|
||||
[test]
|
||||
# py.test options when running `python setup.py test`
|
||||
addopts = tests
|
||||
|
||||
[pytest]
|
||||
# Options for py.test:
|
||||
# Specify command line options as you would do when invoking py.test directly.
|
||||
# e.g. --cov-report html (or xml) for html/xml output or --junitxml junit.xml
|
||||
# in order to write a coverage file that can be read by Jenkins.
|
||||
addopts =
|
||||
--cov wafo --cov-report term-missing
|
||||
--verbose
|
||||
|
||||
[aliases]
|
||||
docs = build_sphinx
|
||||
|
||||
[bdist_wheel]
|
||||
# Use this option if your package is pure-python
|
||||
universal = 0
|
||||
|
||||
[build_sphinx]
|
||||
source_dir = docs
|
||||
build_dir = docs/_build
|
||||
|
||||
[pbr]
|
||||
# Let pbr run sphinx-apidoc
|
||||
autodoc_tree_index_modules = True
|
||||
# autodoc_tree_excludes = ...
|
||||
# Let pbr itself generate the apidoc
|
||||
# autodoc_index_modules = True
|
||||
# autodoc_exclude_modules = ...
|
||||
# Convert warnings to errors
|
||||
# warnerrors = True
|
||||
|
||||
[devpi:upload]
|
||||
# Options for the devpi: PyPI serer and packaging tool
|
||||
# VCS export must be deactivated since we are using setuptools-scm
|
||||
no-vcs = 1
|
||||
format = bdist_wheel
|
||||
@ -0,0 +1,68 @@
|
||||
#!/usr/bin/env python
|
||||
# -*- coding: utf-8 -*-
|
||||
"""
|
||||
Setup file for wafo.
|
||||
|
||||
This file was generated with PyScaffold 2.4.2, a tool that easily
|
||||
puts up a scaffold for your new Python project. Learn more under:
|
||||
http://pyscaffold.readthedocs.org/
|
||||
"""
|
||||
|
||||
from __future__ import division, absolute_import, print_function
|
||||
|
||||
# numpy.distutils will figure out if setuptools is available when imported
|
||||
# this allows us to combine setuptools use_pyscaffold=True and f2py extensions
|
||||
import setuptools
|
||||
from numpy.distutils.core import setup, Extension
|
||||
|
||||
import sys
|
||||
|
||||
|
||||
def setup_package_pyscaffold():
|
||||
|
||||
extensions = []
|
||||
|
||||
c_lib_ext = Extension('wafo.c_library',
|
||||
sources=['wafo/source/c_library/c_library.pyf',
|
||||
'wafo/source/c_library/c_functions.c'])
|
||||
extensions.append(c_lib_ext)
|
||||
|
||||
# rind_ext = Extension('wafo.rindmod',
|
||||
# extra_objects=['wafo/source/rind2007/intmodule.f',
|
||||
# 'wafo/source/rind2007/jacobmod.f',
|
||||
# 'wafo/source/rind2007/swapmod.f',
|
||||
# 'wafo/source/rind2007/fimod.f',
|
||||
# 'wafo/source/rind2007/rindmod.f',
|
||||
# 'wafo/source/rind2007/rind71mod.f'],
|
||||
# sources=['wafo/source/rind2007/rind_interface.f'])
|
||||
# extensions.append(rind_ext)
|
||||
#
|
||||
# mreg_ext = Extension('wafo.cov2mod',
|
||||
# sources=['wafo/source/mreg/dsvdc.f',
|
||||
# 'wafo/source/mreg/mregmodule.f',
|
||||
# 'wafo/source/mreg/intfcmod.f',
|
||||
# 'wafo/source/mreg/cov2mmpdfreg_intfc.f'],
|
||||
# include_dirs=['wafo/source/rind2007'])
|
||||
# extensions.append(mreg_ext)
|
||||
|
||||
mvn_ext = Extension('wafo.mvn',
|
||||
sources=['wafo/source/mvn/mvn.pyf',
|
||||
'wafo/source/mvn/mvndst.f'])
|
||||
extensions.append(mvn_ext)
|
||||
|
||||
# mvnprd_ext = Extension('wafo.mvnprdmod',
|
||||
# sources=['wafo/source/mvnprd/mvnprd.f',
|
||||
# 'wafo/source/mvnprd/mvnprodcorrprb.f',
|
||||
# 'wafo/source/mvnprd/mvnprd_interface.f'])
|
||||
# extensions.append(mvnprd_ext)
|
||||
|
||||
|
||||
needs_sphinx = {'build_sphinx', 'upload_docs'}.intersection(sys.argv)
|
||||
sphinx = ['sphinx'] if needs_sphinx else []
|
||||
setup(setup_requires=['six', 'pyscaffold>=2.4rc1,<2.5a0'] + sphinx,
|
||||
tests_require=['pytest_cov', 'pytest'],
|
||||
use_pyscaffold=True,
|
||||
ext_modules=extensions)
|
||||
|
||||
if __name__ == "__main__":
|
||||
setup_package_pyscaffold()
|
||||
@ -0,0 +1,12 @@
|
||||
#!/usr/bin/env python
|
||||
# -*- coding: utf-8 -*-
|
||||
"""
|
||||
Dummy conftest.py for wafo.
|
||||
|
||||
If you don't know what this is for, just leave it empty.
|
||||
Read more about conftest.py under:
|
||||
https://pytest.org/latest/plugins.html
|
||||
"""
|
||||
from __future__ import print_function, absolute_import, division
|
||||
|
||||
import pytest
|
||||
@ -0,0 +1,17 @@
|
||||
# -*- coding: utf-8 -*-
|
||||
"""
|
||||
Created on Sun Oct 25 14:55:34 2015
|
||||
|
||||
@author: dave
|
||||
"""
|
||||
|
||||
def configuration(parent_package='', top_path=None):
|
||||
from numpy.distutils.misc_util import Configuration
|
||||
config = Configuration('wafo', parent_package, top_path)
|
||||
config.add_subpackage('source')
|
||||
config.make_config_py()
|
||||
return config
|
||||
|
||||
if __name__ == "__main__":
|
||||
from numpy.distutils.core import setup
|
||||
setup(**configuration(top_path='').todict())
|
||||
@ -0,0 +1,4 @@
|
||||
# THIS FILE IS GENERATED FROM SETUP.PY
|
||||
short_version='0.1.2'
|
||||
version='0.1.2'
|
||||
release=False
|
||||
Loading…
Reference in New Issue