danh
/
pywafo
1
0
Fork 0
Code Issues Pull Requests Releases Wiki Activity

Updated kreg_demo3

Browse Source
master
Per.Andreas.Brodtkorb 13 years ago
parent 99aa5e1b9e
commit bb13a4188c
1 changed files with 47 additions and 31 deletions
Show Stats Download Patch File Download Diff File

78
pywafo/src/wafo/kdetools.py
Unescape Escape View File

@ -1608,7 +1608,7 @@ class Kernel(object):
h[dim] = h1 h[dim] = h1
#end % for dim loop #end % for dim loop
return h return h
def hisj(self, data, inc=512, L=5): def hisj(self, data, inc=512, L=7):
''' '''
HISJ Improved Sheather-Jones estimate of smoothing parameter. HISJ Improved Sheather-Jones estimate of smoothing parameter.
@ -1620,7 +1620,7 @@ class Kernel(object):
Parameters Parameters
---------- ----------
data - a vector of data from which the density estimate is constructed; data - a vector of data from which the density estimate is constructed;
n - the number of mesh points used in the uniform discretization inc - the number of mesh points used in the uniform discretization
Returns Returns
------- -------
@ -1637,7 +1637,7 @@ class Kernel(object):
# R= int(mkernel(x)^2), mu2= int(x^2*mkernel(x)) # R= int(mkernel(x)^2), mu2= int(x^2*mkernel(x))
mu2, R, unusedRdd = self.stats() mu2, R, unusedRdd = self.stats()
STEconstant = R / (mu2 ** (2) * n) STEconstant = R / (n * mu2 ** 2)
amin = A.min(axis=1) # Find the minimum value of A. amin = A.min(axis=1) # Find the minimum value of A.
amax = A.max(axis=1) # Find the maximum value of A. amax = A.max(axis=1) # Find the maximum value of A.
@ -1679,7 +1679,7 @@ class Kernel(object):
#a = dct(c/c.sum(), norm=None) #a = dct(c/c.sum(), norm=None)
a = dct(c/len(A[dim]), norm=None) a = dct(c/len(A[dim]), norm=None)
#% now compute the optimal bandwidth^2 using the referenced method # now compute the optimal bandwidth^2 using the referenced method
I = np.asfarray(np.arange(1, inc))**2 I = np.asfarray(np.arange(1, inc))**2
a2 = (a[1:]/2)**2 a2 = (a[1:]/2)**2
fun = lambda t: fixed_point(t, N, I, a2) fun = lambda t: fixed_point(t, N, I, a2)
@ -1825,7 +1825,7 @@ class Kernel(object):
return h return h
def hscv(self, data, hvec=None, inc=128, maxit=100): def hscv(self, data, hvec=None, inc=128, maxit=100, fulloutput=False):
''' '''
HSCV Smoothed cross-validation estimate of smoothing parameter. HSCV Smoothed cross-validation estimate of smoothing parameter.
@ -1954,7 +1954,10 @@ class Kernel(object):
warnings.warn('Optimum is probably higher than hs=%g for dim=%d' % (h[dim] * s, dim)) warnings.warn('Optimum is probably higher than hs=%g for dim=%d' % (h[dim] * s, dim))
hvec = hvec * (STEconstant / STEconstant2) ** (1 / 5) hvec = hvec * (STEconstant / STEconstant2) ** (1 / 5)
return h * sigmaA if fulloutput:
return h * sigmaA, score, hvec, sigmaA
else:
return h * sigmaA
def hldpi(self, data, L=2, inc=128): def hldpi(self, data, L=2, inc=128):
'''HLDPI L-stage Direct Plug-In estimate of smoothing parameter. '''HLDPI L-stage Direct Plug-In estimate of smoothing parameter.
@ -1992,8 +1995,8 @@ class Kernel(object):
# R= int(mkernel(x)^2), mu2= int(x^2*mkernel(x)) # R= int(mkernel(x)^2), mu2= int(x^2*mkernel(x))
mu2, R, unusedRdd = self.stats() mu2, R, unusedRdd = self.stats()
AMISEconstant = (8 * sqrt(pi) * R / (3 * mu2 ** 2 * n)) ** (1. / 5) AMISEconstant = (8 * sqrt(pi) * R / (3 * n * mu2 ** 2)) ** (1. / 5)
STEconstant = R / (mu2 ** (2) * n) STEconstant = R / (n * mu2 ** 2)
sigmaA = self.hns(A) / AMISEconstant sigmaA = self.hns(A) / AMISEconstant
@ -2055,11 +2058,7 @@ class Kernel(object):
#end #end
#end #end
h[dim] = (STEconstant / PSI) ** (1. / 5) h[dim] = (STEconstant / PSI) ** (1. / 5)
return h return h
def norm_factor(self, d=1, n=None): def norm_factor(self, d=1, n=None):
return self.kernel.norm_factor(d, n) return self.kernel.norm_factor(d, n)
def eval_points(self, points): def eval_points(self, points):
@ -3478,7 +3477,7 @@ def _get_data(n=100, symmetric=False, loc1=1.1, scale1=0.6, scale2=1.0):
norm1 = scale2*(dist.pdf(-loc1, loc=-loc1, scale=scale1) + dist.pdf(-loc1, loc=loc1, scale=scale1)) norm1 = scale2*(dist.pdf(-loc1, loc=-loc1, scale=scale1) + dist.pdf(-loc1, loc=loc1, scale=scale1))
fun1 = lambda x : (dist.pdf(x, loc=-loc1, scale=scale1) + dist.pdf(x, loc=loc1, scale=scale1))/norm1 fun1 = lambda x : ((dist.pdf(x, loc=-loc1, scale=scale1) + dist.pdf(x, loc=loc1, scale=scale1))/norm1).clip(max=1.0)
x = np.sort(6*np.random.rand(n,1)-3, axis=0) x = np.sort(6*np.random.rand(n,1)-3, axis=0)
@ -3500,8 +3499,7 @@ def kreg_demo2(n=100, hs=None, symmetric=False, fun='hisj', plotlog=False):
def kreg_demo3(x,y, fun1, hs=None, fun='hisj', plotlog=False): def kreg_demo3(x,y, fun1, hs=None, fun='hisj', plotlog=False):
import scipy.stats as st import scipy.stats as st
alpha=0.1
alpha=0.25
z0 = -_invnorm(alpha/2) z0 = -_invnorm(alpha/2)
hs1 = Kernel('gauss', fun=fun).get_smoothing(x) hs1 = Kernel('gauss', fun=fun).get_smoothing(x)
@ -3516,8 +3514,10 @@ def kreg_demo3(x,y, fun1, hs=None, fun='hisj', plotlog=False):
#hy2 = Kernel('gauss', fun=fun).get_smoothing(y) #hy2 = Kernel('gauss', fun=fun).get_smoothing(y)
#kernel = Kernel('gauss',fun=fun) #kernel = Kernel('gauss',fun=fun)
hopt = (hs1+2*hs2)/3 #kernel.get_smoothing(x) #hopt = (hs1+2*hs2)/3
#hopt = sqrt(hs1*hs2) #hopt = (hs1+4*hs2)/5 #kernel.get_smoothing(x)
#hopt = hs2
hopt = sqrt(hs1*hs2)
#hopt=sqrt(hx*hy); #hopt=sqrt(hx*hy);
if hs is None: if hs is None:
hs = hopt hs = hopt
@ -3535,19 +3535,26 @@ def kreg_demo3(x,y, fun1, hs=None, fun='hisj', plotlog=False):
xi = np.linspace(xmin-hopt,xmax+hopt, ni) xi = np.linspace(xmin-hopt,xmax+hopt, ni)
xiii = np.linspace(xmin-hopt,xmax+hopt, 4*ni+1) xiii = np.linspace(xmin-hopt,xmax+hopt, 4*ni+1)
from wafo.interpolate import stineman_interp
fact = stineman_interp([x.size], [0, 2000], [0.25, 1.0], yp=[0.75/2000,0.75/2000]).clip(min=0.9,max=1.0)
print("fact=%g" % (fact))
kreg = KRegression(x, y, hs=hs*fact, p=0)
#fi = kreg(xi)
f = kreg(xiii,output='plotobj', title='KRegr %s f=%g, n=%d, hs1=%g, hs2=%g' % (fun,fact,n,hs1,hs2), plotflag=1)
c = gridcount(x, xi) c = gridcount(x, xi)
if (y==True).any(): if (y==True).any():
c0 = gridcount(x[y==True],xi) c0 = gridcount(x[y==True],xi)
else: else:
c0 = np.zeros(xi.shape) c0 = np.zeros(xi.shape)
yi = np.where(c==0, 0, c0/c) yi = np.where(c==0, 0, c0/c)
from wafo.interpolate import stineman_interp
fact = 1.0 #stineman_interp([x.size], [0, 2000], [0.25, 1.0], yp=[0.75/2000,0.75/2000]).clip(min=0.75,max=1.0)
print("fact=%g" % (fact))
kreg = KRegression(x, y, hs=hs*fact, p=0)
fiii = kreg(xiii)
yiii = stineman_interp(xiii, x, y)
fit = fun1(xiii).clip(max=1.0)
df = np.diff(fiii)
eerr = np.abs(yiii-fiii).std()+ 0.5*(df[:-1]*df[1:]<0).sum()/n
err = (fiii-fit).std()
f = kreg(xiii,output='plotobj', title='%s err=%1.3f,eerr=%1.3f, n=%d, hs=%1.3f, hs1=%1.3f, hs2=%1.3f' % (fun,err,eerr,n,hs, hs1,hs2), plotflag=1)
#yi[yi==0] = 1.0/(c[c!=0].min()+4) #yi[yi==0] = 1.0/(c[c!=0].min()+4)
#yi[yi==1] = 1-1.0/(c[c!=0].min()+4) #yi[yi==1] = 1-1.0/(c[c!=0].min()+4)
#yi[yi==0] = fi[yi==0] #yi[yi==0] = fi[yi==0]
@ -3601,7 +3608,7 @@ def kreg_demo3(x,y, fun1, hs=None, fun='hisj', plotlog=False):
# Jeffreys intervall a=b=0.5 # Jeffreys intervall a=b=0.5
#st.beta.isf(alpha/2, x+a, n-x+b) #st.beta.isf(alpha/2, x+a, n-x+b)
ab = 0.03 ab = 0.055
pi1 = pi #fun1(xiii) pi1 = pi #fun1(xiii)
pup2 = np.where(pi==1, 1, st.beta.isf(alpha/2, ciii*pi1+ab, ciii*(1-pi1)+ab)) pup2 = np.where(pi==1, 1, st.beta.isf(alpha/2, ciii*pi1+ab, ciii*(1-pi1)+ab))
plo2 = np.where(pi==0, 0, st.beta.isf(1-alpha/2, ciii*pi1+ab, ciii*(1-pi1)+ab)) plo2 = np.where(pi==0, 0, st.beta.isf(1-alpha/2, ciii*pi1+ab, ciii*(1-pi1)+ab))
@ -3630,7 +3637,7 @@ def kreg_demo3(x,y, fun1, hs=None, fun='hisj', plotlog=False):
if plotlog: if plotlog:
plt.setp(h,yscale='log') plt.setp(h,yscale='log')
#plt.show() #plt.show()
return hs1, hs2
def kde_gauss_demo(n=50): def kde_gauss_demo(n=50):
''' '''
KDEDEMO Demonstrate the KDEgauss KDEDEMO Demonstrate the KDEgauss
@ -3700,12 +3707,21 @@ if __name__ == '__main__':
#kreg_demo2(n=120,symmetric=True,fun='hste', plotlog=True) #kreg_demo2(n=120,symmetric=True,fun='hste', plotlog=True)
k = 0 k = 0
for i, n in enumerate([50, 100,300,600, 4000]): for i, n in enumerate([50, 100,300,600, 4000]):
x,y, fun1 = _get_data(n, symmetric=True,loc1=1.2, scale1=0.3, scale2=1.25) x,y, fun1 = _get_data(n, symmetric=True,loc1=0.5, scale1=0.3, scale2=.75)
k0 = k k0 = k
for j, fun in enumerate(['hste', 'hisj', 'hstt', 'hldpi']):
plt.figure(k) for j, fun in enumerate(['hste']):
k +=1 hs1 = Kernel('gauss', fun=fun).get_smoothing(x)
kreg_demo3(x,y,fun1, hs=None, fun=fun, plotlog=False) if (y==True).any():
hs2 = Kernel('gauss', fun=fun).get_smoothing(x[y==True])
else:
hs2 = 4*hs1
hsmax = sqrt(hs1*hs2)
for hi in np.linspace(hsmax*0.25,hsmax,9):
plt.figure(k)
k +=1
unused = kreg_demo3(x,y,fun1, hs=hi, fun=fun, plotlog=False)
#kreg_demo2(n=n,symmetric=True,fun='hste', plotlog=False) #kreg_demo2(n=n,symmetric=True,fun='hste', plotlog=False)
fig.tile(range(k0,k)) fig.tile(range(k0,k))
plt.ioff() plt.ioff()

Write Preview
Loading…
Cancel
Save