Convert function to CLI command

src/data/profile_features.py

@@ -1,6 +1,6 @@
 import os
 from functools import partial
-
+import click
 import fiona
 import numpy as np
 import pandas as pd
@@ -8,6 +8,11 @@ import pyproj
 from shapely.geometry import LineString, Point
 from shapely.geometry import shape
 from shapely.ops import transform
+import logging.config
+
+
+logging.config.fileConfig("./src/logging.conf", disable_existing_loggers=False)
+logger = logging.getLogger(__name__)
 
 
 def shapes_from_shp(shp_file):
@@ -142,12 +147,26 @@ def parse_profile_features(df_sites, df_profiles, dune_crest_shp, dune_toe_shp):
     return df_profile_features
 
 
-if __name__ == "__main__":
-    data_folder = "./data/interim"
-    df_sites = pd.read_csv(os.path.join(data_folder, "sites.csv"), index_col=[0])
-    df_profiles = pd.read_csv(os.path.join(data_folder, "profiles.csv"), index_col=[0, 1, 2])
-
-    dune_crest_shp = "./data/raw/profile_features/dune_crests.shp"
-    dune_toe_shp = "./data/raw/profile_features/dune_toes.shp"
+@click.command(short_help='create .csv of dune toe and crest positions')
+@click.option("--dune-crest-shp", required=True, help=".csv file to convert")
+@click.option("--dune-toe-shp", required=True, help="where to store .shp file")
+@click.option("--sites-csv", required=True, help="where to store .shp file")
+@click.option("--profiles-csv", required=True, help="where to store .shp file")
+@click.option("--output-csv", required=True, help="where to store .shp file")
+def create_profile_features(dune_crest_shp, dune_toe_shp, sites_csv, profiles_csv, output_csv):
+    logger.info("Creating .csv of dune crests and toes")
+    df_sites = pd.read_csv(sites_csv, index_col=[0])
+    df_profiles = pd.read_csv(profiles_csv, index_col=[0, 1, 2])
     df_profile_features = parse_profile_features(df_sites, df_profiles, dune_crest_shp, dune_toe_shp)
-    df_profile_features.to_csv("./data/interim/profile_features.csv")
+    df_profile_features.to_csv(output_csv)
+    logger.info("Done!")
+
+
+@click.group()
+def cli():
+    pass
+
+
+if __name__ == "__main__":
+    cli.add_command(create_profile_features)
+    cli()