Update Makefile

Makefile

@@ -1,9 +1,24 @@
-DATA_BACKUP_DIR = "J:/Coastal/Temp/CKL/nsw_2016_storm_impact/data"
+###############################
+# Load environment variables
+
+include .env
+export $(shell sed 's/=.*//' .env)
+CURRENT_DIR = $(shell pwd)
+
+
+###############################
+# Create python virtual environment
+
+. PHONY: venv_init
+
+venv-init: ##@environment Setup virtual environment
+	pip install pipenv
+	pipenv --python 3.7
+	pipenv install
 
-#################################################################################
+
-# PROJECT RULES                                                                 #
+###############################
-#################################################################################
+# Get data from network drive
-.PHONY: push-data mat_to_csv sites-csv-to-shp
 
 push-data: ##@data Copies data from ./data/ to data backup directory
 	rclone copy ./data/ $(DATA_BACKUP_DIR) --exclude "*.las" --progress
@@ -12,15 +27,74 @@ pull-data: ##@data Copies data from data backup directory to ./data/
 	# We probably don't want to pull the raw LIDAR .las files, so lets exclude them
 	rclone copy $(DATA_BACKUP_DIR) ./data/ --exclude "*.las" --progress
 
+
+###############################
+# Process data
+.PHONY: process-mat
+
+process-mat: ./data/interim/sites.csv ./data/interim/waves.csv ./data/interim/profiles.csv ./data/interim/tides.csv  ##@data Process all .mat to .csv
+
+# Calculates beach orientations at each profile
+./data/raw/processed_shorelines/orientations.mat: ./data/raw/processed_shorelines/profiles.mat
+	$(MATLAB_PATH) -nosplash -r "cd $(CURRENT_DIR); run('./src/data/beach_orientations.m'); quit"
+
+# Produces a .csv of sites where our beach cross-sections are located
+./data/interim/sites.csv: ./data/raw/processed_shorelines/*.mat
+	pipenv run python ./src/data/parse_mat.py create-sites-csv \
+	--waves-mat "./data/raw/processed_shorelines/waves.mat" \
+	--tides-mat "./data/raw/processed_shorelines/tides.mat" \
+	--profiles-mat "./data/raw/processed_shorelines/profiles.mat" \
+	--orientations-mat "./data/raw/processed_shorelines/orientations.mat" \
+	--output-file "./data/interim/sites.csv"
+
+# Produces a .csv of waves for each site
+./data/interim/waves.csv: ./data/interim/sites.csv ./data/raw/processed_shorelines/waves.mat ./src/data/parse_mat.py
+	pipenv run python ./src/data/parse_mat.py create-waves-csv \
+	--waves-mat "./data/raw/processed_shorelines/waves.mat" \
+	--sites-csv "./data/interim/sites.csv" \
+	--output-file "./data/interim/waves.csv"
+
+# Produces a .csv of profiles for each site
+./data/interim/profiles.csv: ./data/interim/sites.csv ./data/raw/processed_shorelines/profiles.mat ./src/data/parse_mat.py
+	pipenv run python ./src/data/parse_mat.py create-profiles-csv \
+	--profiles-mat "./data/raw/processed_shorelines/profiles.mat" \
+	--sites-csv "./data/interim/sites.csv" \
+	--output-file "./data/interim/profiles.csv"
+
+# Produces a .csv of tides for each site
+./data/interim/tides.csv: ./data/interim/sites.csv ./data/raw/processed_shorelines/tides.mat ./src/data/parse_mat.py
+	pipenv run python ./src/data/parse_mat.py create-tides-csv \
+	--tides-mat "./data/raw/processed_shorelines/tides.mat" \
+	--sites-csv "./data/interim/sites.csv" \
+	--output-file "./data/interim/tides.csv"
+
+./data/interim/sites.shp : ./data/interim/sites.csv
+	pipenv run python ./src/data/csv_to_shp.py sites-csv-to-shp \
+	--input-csv "./data/interim/sites.csv" \
+	--output-shp "./data/interim/sites.shp"
+
+#################################################################################
+# PROJECT RULES                                                                 #
+#################################################################################
+.PHONY: push-data parse_mat sites-csv-to-shp
+
+
 mat-to-csv: ##@data Converts raw .mat files to .csv for python
-	cd ./src/data/ && python mat_to_csv.py
+	cd ./src/data/ && python parse_mat.py
 
 sites-csv-to-shp: ##@data Create the sites.shp from sites.csv
 	cd ./src/data && python csv_to_shp.py sites_csv_to_shp "..\..\data\interim\sites.csv" "..\..\data\interim\sites.shp"
 
-#################################################################################
+
-# Self Documenting Commands                                                     #
+###############################
-#################################################################################
+# Misc commands
+format: ./src/*.py ##@misc Check python file formatting
+	pipenv run black --line-length 120 "src/"
+
+
+###############################
+# Help command
+
 .DEFAULT_GOAL := help
 .PHONY: help