Convert to CLI commands

src/data/csv_to_shp.py

@@ -7,11 +7,14 @@ import fiona
 import pandas as pd
 from fiona.crs import from_epsg
 from shapely.geometry import Point, mapping
+import logging.config
 
+logging.config.fileConfig("./src/logging.conf", disable_existing_loggers=False)
+logger = logging.getLogger(__name__)
 
 @click.command()
-@click.argument('input_csv')
+@click.option("--input-csv", required=True, help=".csv file to convert")
-@click.argument('output_shp')
+@click.option("--output-shp", required=True, help="where to store .shp file")
 def sites_csv_to_shp(input_csv, output_shp):
     """
     Converts our dataframe of sites to .shp to load in QGis
@@ -19,30 +22,22 @@ def sites_csv_to_shp(input_csv, output_shp):
     :param output_shp:
     :return:
     """
+    logger.info('Converting %s to %s', input_csv, output_shp)
     df_sites = pd.read_csv(input_csv, index_col=[0])
 
-    schema = {
+    schema = {"geometry": "Point", "properties": {"beach": "str", "site_id": "str"}}
-        'geometry': 'Point',
+    with fiona.open(output_shp, "w", crs=from_epsg(4326), driver="ESRI Shapefile", schema=schema) as output:
-        'properties': {
-            'beach': 'str',
-            'site_id': 'str'
-        }
-    }
-    with fiona.open(output_shp, 'w', crs=from_epsg(4326), driver='ESRI Shapefile', schema=schema) as output:
         for index, row in df_sites.iterrows():
-            point = Point(row['lon'], row['lat'])
+            point = Point(row["lon"], row["lat"])
-            prop = {
+            prop = {"beach": row["beach"], "site_id": index}
-                'beach': row['beach'],
+            output.write({"geometry": mapping(point), "properties": prop})
-                'site_id': index,
+    logger.info('Done!')
-            }
-            output.write({'geometry': mapping(point), 'properties': prop})
-
 
 @click.group()
 def cli():
     pass
 
 
-if __name__ == '__main__':
+if __name__ == "__main__":
     cli.add_command(sites_csv_to_shp)
     cli()