Add CLI functionality

Makefile

@@ -4,11 +4,12 @@
 # PROJECT RULES                                                                 #
 #################################################################################
 .PHONY: mat_to_csv
+
 mat-to-csv: ##@data Converts raw .mat files to .csv for python
 	cd ./src/data/ && python mat_to_csv.py
 
-sites-csv-to-shp: ./data/interim/sites.shp
+sites-csv-to-shp: ##@data Create the sites.shp from sites.csv
-    cd ./src/data && python csv_to_shp.py
+	cd ./src/data && python csv_to_shp.py sites_csv_to_shp "..\..\data\interim\sites.csv" "..\..\data\interim\sites.shp"
 
 #################################################################################
 # Self Documenting Commands                                                     #
@@ -28,16 +29,16 @@ RESET  := $(shell tput -Txterm sgr0)
 # And add help text after each target name starting with '\#\#'
 # A category can be added with @category
 HELP_FUN = \
-    %help; \
+	%help; \
-    while(<>) { push @{$$help{$$2 // 'options'}}, [$$1, $$3] if /^([a-zA-Z\-]+)\s*:.*\#\#(?:@([a-zA-Z\-]+))?\s(.*)$$/ }; \
+	while(<>) { push @{$$help{$$2 // 'options'}}, [$$1, $$3] if /^([a-zA-Z\-]+)\s*:.*\#\#(?:@([a-zA-Z\-]+))?\s(.*)$$/ }; \
-    print "usage: make [target]\n\n"; \
+	print "usage: make [target]\n\n"; \
-    for (sort keys %help) { \
+	for (sort keys %help) { \
-    print "${WHITE}$$_:${RESET}\n"; \
+	print "${WHITE}$$_:${RESET}\n"; \
-    for (@{$$help{$$_}}) { \
+	for (@{$$help{$$_}}) { \
-    $$sep = " " x (32 - length $$_->[0]); \
+	$$sep = " " x (32 - length $$_->[0]); \
-    print "  ${YELLOW}$$_->[0]${RESET}$$sep${GREEN}$$_->[1]${RESET}\n"; \
+	print "  ${YELLOW}$$_->[0]${RESET}$$sep${GREEN}$$_->[1]${RESET}\n"; \
-    }; \
+	}; \
-    print "\n"; }
+	print "\n"; }
 
 help: ##@other Show this help.
 	@perl -e '$(HELP_FUN)' $(MAKEFILE_LIST)

src/data/csv_to_shp.py

@@ -2,14 +2,17 @@
 Converts .csv files to .shape files
 """
 
-from fiona.crs import from_epsg
+import click
 import fiona
-from shapely.geometry import Point, mapping
-from fiona import collection
 import pandas as pd
-import os
+from fiona.crs import from_epsg
+from shapely.geometry import Point, mapping
 
-def sites_csv_to_shp(input_csv='.\data\interim\sites.csv', output_shp='.\data\interim\sites.shp'):
+
+@click.command()
+@click.argument('input_csv')
+@click.argument('output_shp')
+def sites_csv_to_shp(input_csv, output_shp):
     """
     Converts our dataframe of sites to .shp to load in QGis
     :param input_csv:
@@ -34,5 +37,12 @@ def sites_csv_to_shp(input_csv='.\data\interim\sites.csv', output_shp='.\data\in
             }
             output.write({'geometry': mapping(point), 'properties': prop})
 
+
+@click.group()
+def cli():
+    pass
+
+
 if __name__ == '__main__':
-    sites_csv_to_shp()
+    cli.add_command(sites_csv_to_shp)
+    cli()