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geetools_VH/gdal_merge.py

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#!/usr/bin/env python
###############################################################################
# $Id$
#
# Project: InSAR Peppers
# Purpose: Module to extract data from many rasters into one output.
# Author: Frank Warmerdam, warmerdam@pobox.com
#
###############################################################################
# Copyright (c) 2000, Atlantis Scientific Inc. (www.atlsci.com)
# Copyright (c) 2009-2011, Even Rouault <even dot rouault at mines-paris dot org>
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Library General Public
# License as published by the Free Software Foundation; either
# version 2 of the License, or (at your option) any later version.
#
# This library is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
# Library General Public License for more details.
#
# You should have received a copy of the GNU Library General Public
# License along with this library; if not, write to the
# Free Software Foundation, Inc., 59 Temple Place - Suite 330,
# Boston, MA 02111-1307, USA.
###############################################################################
# changes 29Apr2011
# If the input image is a multi-band one, use all the channels in
# building the stack.
# anssi.pekkarinen@fao.org
import math
import sys
import time
from osgeo import gdal
try:
progress = gdal.TermProgress_nocb
except:
progress = gdal.TermProgress
__version__ = '$id$'[5:-1]
verbose = 0
quiet = 0
# =============================================================================
def raster_copy( s_fh, s_xoff, s_yoff, s_xsize, s_ysize, s_band_n,
t_fh, t_xoff, t_yoff, t_xsize, t_ysize, t_band_n,
nodata=None ):
if verbose != 0:
print('Copy %d,%d,%d,%d to %d,%d,%d,%d.'
% (s_xoff, s_yoff, s_xsize, s_ysize,
t_xoff, t_yoff, t_xsize, t_ysize ))
if nodata is not None:
return raster_copy_with_nodata(
s_fh, s_xoff, s_yoff, s_xsize, s_ysize, s_band_n,
t_fh, t_xoff, t_yoff, t_xsize, t_ysize, t_band_n,
nodata )
s_band = s_fh.GetRasterBand( s_band_n )
m_band = None
# Works only in binary mode and doesn't take into account
# intermediate transparency values for compositing.
if s_band.GetMaskFlags() != gdal.GMF_ALL_VALID:
m_band = s_band.GetMaskBand()
elif s_band.GetColorInterpretation() == gdal.GCI_AlphaBand:
m_band = s_band
if m_band is not None:
return raster_copy_with_mask(
s_fh, s_xoff, s_yoff, s_xsize, s_ysize, s_band_n,
t_fh, t_xoff, t_yoff, t_xsize, t_ysize, t_band_n,
m_band )
s_band = s_fh.GetRasterBand( s_band_n )
t_band = t_fh.GetRasterBand( t_band_n )
data = s_band.ReadRaster( s_xoff, s_yoff, s_xsize, s_ysize,
t_xsize, t_ysize, t_band.DataType )
t_band.WriteRaster( t_xoff, t_yoff, t_xsize, t_ysize,
data, t_xsize, t_ysize, t_band.DataType )
return 0
# =============================================================================
def raster_copy_with_nodata( s_fh, s_xoff, s_yoff, s_xsize, s_ysize, s_band_n,
t_fh, t_xoff, t_yoff, t_xsize, t_ysize, t_band_n,
nodata ):
try:
import numpy as Numeric
except ImportError:
import Numeric
s_band = s_fh.GetRasterBand( s_band_n )
t_band = t_fh.GetRasterBand( t_band_n )
data_src = s_band.ReadAsArray( s_xoff, s_yoff, s_xsize, s_ysize,
t_xsize, t_ysize )
data_dst = t_band.ReadAsArray( t_xoff, t_yoff, t_xsize, t_ysize )
nodata_test = Numeric.equal(data_src,nodata)
to_write = Numeric.choose( nodata_test, (data_src, data_dst) )
t_band.WriteArray( to_write, t_xoff, t_yoff )
return 0
# =============================================================================
def raster_copy_with_mask( s_fh, s_xoff, s_yoff, s_xsize, s_ysize, s_band_n,
t_fh, t_xoff, t_yoff, t_xsize, t_ysize, t_band_n,
m_band ):
try:
import numpy as Numeric
except ImportError:
import Numeric
s_band = s_fh.GetRasterBand( s_band_n )
t_band = t_fh.GetRasterBand( t_band_n )
data_src = s_band.ReadAsArray( s_xoff, s_yoff, s_xsize, s_ysize,
t_xsize, t_ysize )
data_mask = m_band.ReadAsArray( s_xoff, s_yoff, s_xsize, s_ysize,
t_xsize, t_ysize )
data_dst = t_band.ReadAsArray( t_xoff, t_yoff, t_xsize, t_ysize )
mask_test = Numeric.equal(data_mask, 0)
to_write = Numeric.choose( mask_test, (data_src, data_dst) )
t_band.WriteArray( to_write, t_xoff, t_yoff )
return 0
# =============================================================================
def names_to_fileinfos( names ):
"""
Translate a list of GDAL filenames, into file_info objects.
names -- list of valid GDAL dataset names.
Returns a list of file_info objects. There may be less file_info objects
than names if some of the names could not be opened as GDAL files.
"""
file_infos = []
for name in names:
fi = file_info()
if fi.init_from_name( name ) == 1:
file_infos.append( fi )
return file_infos
# *****************************************************************************
class file_info:
"""A class holding information about a GDAL file."""
def init_from_name(self, filename):
"""
Initialize file_info from filename
filename -- Name of file to read.
Returns 1 on success or 0 if the file can't be opened.
"""
fh = gdal.Open( filename )
if fh is None:
return 0
self.filename = filename
self.bands = fh.RasterCount
self.xsize = fh.RasterXSize
self.ysize = fh.RasterYSize
self.band_type = fh.GetRasterBand(1).DataType
self.projection = fh.GetProjection()
self.geotransform = fh.GetGeoTransform()
self.ulx = self.geotransform[0]
self.uly = self.geotransform[3]
self.lrx = self.ulx + self.geotransform[1] * self.xsize
self.lry = self.uly + self.geotransform[5] * self.ysize
ct = fh.GetRasterBand(1).GetRasterColorTable()
if ct is not None:
self.ct = ct.Clone()
else:
self.ct = None
return 1
def report( self ):
print('Filename: '+ self.filename)
print('File Size: %dx%dx%d'
% (self.xsize, self.ysize, self.bands))
print('Pixel Size: %f x %f'
% (self.geotransform[1],self.geotransform[5]))
print('UL:(%f,%f) LR:(%f,%f)'
% (self.ulx,self.uly,self.lrx,self.lry))
def copy_into( self, t_fh, s_band = 1, t_band = 1, nodata_arg=None ):
"""
Copy this files image into target file.
This method will compute the overlap area of the file_info objects
file, and the target gdal.Dataset object, and copy the image data
for the common window area. It is assumed that the files are in
a compatible projection ... no checking or warping is done. However,
if the destination file is a different resolution, or different
image pixel type, the appropriate resampling and conversions will
be done (using normal GDAL promotion/demotion rules).
t_fh -- gdal.Dataset object for the file into which some or all
of this file may be copied.
Returns 1 on success (or if nothing needs to be copied), and zero one
failure.
"""
t_geotransform = t_fh.GetGeoTransform()
t_ulx = t_geotransform[0]
t_uly = t_geotransform[3]
t_lrx = t_geotransform[0] + t_fh.RasterXSize * t_geotransform[1]
t_lry = t_geotransform[3] + t_fh.RasterYSize * t_geotransform[5]
# figure out intersection region
tgw_ulx = max(t_ulx,self.ulx)
tgw_lrx = min(t_lrx,self.lrx)
if t_geotransform[5] < 0:
tgw_uly = min(t_uly,self.uly)
tgw_lry = max(t_lry,self.lry)
else:
tgw_uly = max(t_uly,self.uly)
tgw_lry = min(t_lry,self.lry)
# do they even intersect?
if tgw_ulx >= tgw_lrx:
return 1
if t_geotransform[5] < 0 and tgw_uly <= tgw_lry:
return 1
if t_geotransform[5] > 0 and tgw_uly >= tgw_lry:
return 1
# compute target window in pixel coordinates.
tw_xoff = int((tgw_ulx - t_geotransform[0]) / t_geotransform[1] + 0.1)
tw_yoff = int((tgw_uly - t_geotransform[3]) / t_geotransform[5] + 0.1)
tw_xsize = int((tgw_lrx - t_geotransform[0])/t_geotransform[1] + 0.5) \
- tw_xoff
tw_ysize = int((tgw_lry - t_geotransform[3])/t_geotransform[5] + 0.5) \
- tw_yoff
if tw_xsize < 1 or tw_ysize < 1:
return 1
# Compute source window in pixel coordinates.
sw_xoff = int((tgw_ulx - self.geotransform[0]) / self.geotransform[1])
sw_yoff = int((tgw_uly - self.geotransform[3]) / self.geotransform[5])
sw_xsize = int((tgw_lrx - self.geotransform[0]) \
/ self.geotransform[1] + 0.5) - sw_xoff
sw_ysize = int((tgw_lry - self.geotransform[3]) \
/ self.geotransform[5] + 0.5) - sw_yoff
if sw_xsize < 1 or sw_ysize < 1:
return 1
# Open the source file, and copy the selected region.
s_fh = gdal.Open( self.filename )
return raster_copy( s_fh, sw_xoff, sw_yoff, sw_xsize, sw_ysize, s_band,
t_fh, tw_xoff, tw_yoff, tw_xsize, tw_ysize, t_band,
nodata_arg )
# =============================================================================
def Usage():
print('Usage: gdal_merge.py [-o out_filename] [-of out_format] [-co NAME=VALUE]*')
print(' [-ps pixelsize_x pixelsize_y] [-tap] [-separate] [-q] [-v] [-pct]')
print(' [-ul_lr ulx uly lrx lry] [-init "value [value...]"]')
print(' [-n nodata_value] [-a_nodata output_nodata_value]')
print(' [-ot datatype] [-createonly] input_files')
print(' [--help-general]')
print('')
# =============================================================================
#
# Program mainline.
#
def main( argv=None ):
global verbose, quiet
verbose = 0
quiet = 0
names = []
format = 'GTiff'
out_file = 'out.tif'
ulx = None
psize_x = None
separate = 0
copy_pct = 0
nodata = None
a_nodata = None
create_options = []
pre_init = []
band_type = None
createonly = 0
bTargetAlignedPixels = False
start_time = time.time()
gdal.AllRegister()
if argv is None:
argv = sys.argv
argv = gdal.GeneralCmdLineProcessor( argv )
if argv is None:
sys.exit( 0 )
# Parse command line arguments.
i = 1
while i < len(argv):
arg = argv[i]
if arg == '-o':
i = i + 1
out_file = argv[i]
elif arg == '-v':
verbose = 1
elif arg == '-q' or arg == '-quiet':
quiet = 1
elif arg == '-createonly':
createonly = 1
elif arg == '-separate':
separate = 1
elif arg == '-seperate':
separate = 1
elif arg == '-pct':
copy_pct = 1
elif arg == '-ot':
i = i + 1
band_type = gdal.GetDataTypeByName( argv[i] )
if band_type == gdal.GDT_Unknown:
print('Unknown GDAL data type: %s' % argv[i])
sys.exit( 1 )
elif arg == '-init':
i = i + 1
str_pre_init = argv[i].split()
for x in str_pre_init:
pre_init.append(float(x))
elif arg == '-n':
i = i + 1
nodata = float(argv[i])
elif arg == '-a_nodata':
i = i + 1
a_nodata = float(argv[i])
elif arg == '-f':
# for backward compatibility.
i = i + 1
format = argv[i]
elif arg == '-of':
i = i + 1
format = argv[i]
elif arg == '-co':
i = i + 1
create_options.append( argv[i] )
elif arg == '-ps':
psize_x = float(argv[i+1])
psize_y = -1 * abs(float(argv[i+2]))
i = i + 2
elif arg == '-tap':
bTargetAlignedPixels = True
elif arg == '-ul_lr':
ulx = float(argv[i+1])
uly = float(argv[i+2])
lrx = float(argv[i+3])
lry = float(argv[i+4])
i = i + 4
elif arg[:1] == '-':
print('Unrecognized command option: %s' % arg)
Usage()
sys.exit( 1 )
else:
names.append(arg)
i = i + 1
if len(names) == 0:
print('No input files selected.')
Usage()
sys.exit( 1 )
Driver = gdal.GetDriverByName(format)
if Driver is None:
print('Format driver %s not found, pick a supported driver.' % format)
sys.exit( 1 )
DriverMD = Driver.GetMetadata()
if 'DCAP_CREATE' not in DriverMD:
print('Format driver %s does not support creation and piecewise writing.\nPlease select a format that does, such as GTiff (the default) or HFA (Erdas Imagine).' % format)
sys.exit( 1 )
# Collect information on all the source files.
file_infos = names_to_fileinfos( names )
if ulx is None:
ulx = file_infos[0].ulx
uly = file_infos[0].uly
lrx = file_infos[0].lrx
lry = file_infos[0].lry
for fi in file_infos:
ulx = min(ulx, fi.ulx)
uly = max(uly, fi.uly)
lrx = max(lrx, fi.lrx)
lry = min(lry, fi.lry)
if psize_x is None:
psize_x = file_infos[0].geotransform[1]
psize_y = file_infos[0].geotransform[5]
if band_type is None:
band_type = file_infos[0].band_type
# Try opening as an existing file.
gdal.PushErrorHandler( 'CPLQuietErrorHandler' )
t_fh = gdal.Open( out_file, gdal.GA_Update )
gdal.PopErrorHandler()
# Create output file if it does not already exist.
if t_fh is None:
if bTargetAlignedPixels:
ulx = math.floor(ulx / psize_x) * psize_x
lrx = math.ceil(lrx / psize_x) * psize_x
lry = math.floor(lry / -psize_y) * -psize_y
uly = math.ceil(uly / -psize_y) * -psize_y
geotransform = [ulx, psize_x, 0, uly, 0, psize_y]
xsize = int((lrx - ulx) / geotransform[1] + 0.5)
ysize = int((lry - uly) / geotransform[5] + 0.5)
if separate != 0:
bands=0
for fi in file_infos:
bands=bands + fi.bands
else:
bands = file_infos[0].bands
t_fh = Driver.Create( out_file, xsize, ysize, bands,
band_type, create_options )
if t_fh is None:
print('Creation failed, terminating gdal_merge.')
sys.exit( 1 )
t_fh.SetGeoTransform( geotransform )
t_fh.SetProjection( file_infos[0].projection )
if copy_pct:
t_fh.GetRasterBand(1).SetRasterColorTable(file_infos[0].ct)
else:
if separate != 0:
bands=0
for fi in file_infos:
bands=bands + fi.bands
if t_fh.RasterCount < bands :
print('Existing output file has less bands than the input files. You should delete it before. Terminating gdal_merge.')
sys.exit( 1 )
else:
bands = min(file_infos[0].bands,t_fh.RasterCount)
# Do we need to set nodata value ?
if a_nodata is not None:
for i in range(t_fh.RasterCount):
t_fh.GetRasterBand(i+1).SetNoDataValue(a_nodata)
# Do we need to pre-initialize the whole mosaic file to some value?
if pre_init is not None:
if t_fh.RasterCount <= len(pre_init):
for i in range(t_fh.RasterCount):
t_fh.GetRasterBand(i+1).Fill( pre_init[i] )
elif len(pre_init) == 1:
for i in range(t_fh.RasterCount):
t_fh.GetRasterBand(i+1).Fill( pre_init[0] )
# Copy data from source files into output file.
t_band = 1
if quiet == 0 and verbose == 0:
progress( 0.0 )
fi_processed = 0
for fi in file_infos:
if createonly != 0:
continue
if verbose != 0:
print("")
print("Processing file %5d of %5d, %6.3f%% completed in %d minutes."
% (fi_processed+1,len(file_infos),
fi_processed * 100.0 / len(file_infos),
int(round((time.time() - start_time)/60.0)) ))
fi.report()
if separate == 0 :
for band in range(1, bands+1):
fi.copy_into( t_fh, band, band, nodata )
else:
for band in range(1, fi.bands+1):
fi.copy_into( t_fh, band, t_band, nodata )
t_band = t_band+1
fi_processed = fi_processed+1
if quiet == 0 and verbose == 0:
progress( fi_processed / float(len(file_infos)) )
# Force file to be closed.
t_fh = None
if __name__ == '__main__':
sys.exit(main())
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