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233 lines
11 KiB
Makefile
233 lines
11 KiB
Makefile
SHELL=cmd
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###############################
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# Load environment variables
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include .env
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export $(shell sed 's/=.*//' .env)
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CURRENT_DIR = $(shell pwd)
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###############################
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# Create python virtual environment
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.PHONY: venv-init
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venv-init: ##@environment Setup virtual environment
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conda env create -f environment.yml --prefix=.venv
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.PHONY: venv-activate
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venv-activate: ##@environment Activates the virtual environment
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activate $(CURRENT_DIR)/.venv
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.PHONY: venv-update
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venv-update: ##@environment Updates to latest packages
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conda update ipykernel && conda update --prefix .venv --all
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.PHONY: venv-requirements-install
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venv-requirements-install: ##@environment Ensures environment.yml packages are installed
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conda env update
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# To install new packages: conda install --prefix .venv PACKAGE
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###############################
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# Get data from network drive
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.PHONY: push-data pull-data
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push-data: ##@data Copies data from ./data/ to data backup directory
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rclone copy ./data/ $(DATA_BACKUP_DIR) --exclude "*.las" --progress
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# We probably don't want to pull the raw LIDAR .las files, so lets exclude them
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pull-data: ##@data Copies data from data backup directory to ./data/
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rclone copy $(DATA_BACKUP_DIR) ./data/ --exclude "*.las" --progress
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###############################
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# Process data
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.PHONY: process-mat
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impacts: ./data/interim/impacts_forecasted_foreshore_slope_sto06.csv ./data/interim/impacts_forecasted_mean_slope_sto06.csv ./data/interim/impacts_observed.csv ##@products makes obsered and forecasted impacts
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# Calculates beach orientations at each profile
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./data/raw/processed_shorelines/orientations.mat: ./data/raw/processed_shorelines/profiles.mat
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$(MATLAB_PATH) -nosplash -r "cd $(CURRENT_DIR); run('./src/data/beach_orientations.m'); quit"
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# # Produces a .csv of sites where our beach cross-sections are located
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# ./data/interim/sites.csv ./data/interim/profiles.csv: ./data/raw/processed_shorelines/profiles.mat
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# activate ./.venv && python ./src/data/parse_mat.py create-sites-and-profiles-csv \
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# --profiles-mat "./data/raw/processed_shorelines/profiles.mat" \
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# --profiles-output-file "./data/interim/profiles.csv" \
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# --sites-output-file "./data/interim/sites.csv"
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# Produces a .csv of sites where our beach cross-sections are located
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./data/interim/sites.csv ./data/interim/profiles.csv: ./data/raw/processed_shorelines/profiles.mat
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activate ./.venv && python ./src/cli.py create-sites-and-profiles-csv \
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--profiles-mat "./data/raw/processed_shorelines/profiles.mat" \
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--profiles-output-file "./data/interim/profiles.csv" \
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--sites-output-file "./data/interim/sites.csv"
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# Produces a .csv of waves for each site
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./data/interim/waves.csv: ./data/interim/sites.csv ./data/raw/processed_shorelines/waves.mat
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activate ./.venv && python ./src/cli.py create-waves-csv \
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--waves-mat "./data/raw/processed_shorelines/waves.mat" \
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--sites-csv "./data/interim/sites.csv" \
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--output-file "./data/interim/waves.csv"
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# Produces a .csv of tides for each site
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./data/interim/tides.csv: ./data/interim/sites.csv ./data/raw/processed_shorelines/tides.mat
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activate ./.venv && python ./src/cli.py create-tides-csv \
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--tides-mat "./data/raw/processed_shorelines/tides.mat" \
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--sites-csv "./data/interim/sites.csv" \
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--output-file "./data/interim/tides.csv"
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# Creates a .shp of our sites to load into QGis
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./data/interim/sites.shp: ./data/interim/sites.csv
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activate ./.venv && python ./src/cli.py sites-csv-to-shp \
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--input-csv "./data/interim/sites.csv" \
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--output-shp "./data/interim/sites.shp"
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# # Creates a .csv of our dune toe and crest profile features from .shp file
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# ./data/interim/profile_features.csv: ./data/raw/profile_features/dune_crests.shp ./data/raw/profile_features/dune_toes.shp ./data/interim/sites.csv ./data/interim/profiles.csv
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# activate ./.venv && python ./src/cli.py create-profile-features \
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# --dune-crest-shp "./data/raw/profile_features/dune_crests.shp" \
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# --dune-toe-shp "./data/raw/profile_features/dune_toes.shp" \
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# --sites-csv "./data/interim/sites.csv" \
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# --profiles-csv "./data/interim/profiles.csv" \
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# --output-csv "./data/interim/profile_features.csv"
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# Create a .csv of our dune toe and crest profile features from Tom Beuzen's .mat file
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# Also apply an overwrite of some values, using an excel sheet
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./data/interim/profile_features.csv: ./data/raw/profile_features_tom_beuzen/*.mat ./data/interim/sites.csv
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activate ./.venv && python ./src/cli.py create-profile-features \
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--crest-mat "./data/raw/profile_features_tom_beuzen/J16_DuneCrest.mat" \
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--toe-mat "./data/raw/profile_features_tom_beuzen/J16_DuneToe.mat" \
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--sites-csv "./data/interim/sites.csv" \
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--output-file "./data/interim/profile_features.csv" \
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&& python ./src/cli.py apply-profile-features-overwrite \
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--interim_file "./data/interim/profile_features.csv" \
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--overwrite_file "./data/raw/profile_features_chris_leaman/profile_features_chris_leaman.xlsx" \
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--profile_file "./data/interim/profiles.csv"
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# Creates a forecast of twl using sto06 and prestorm time varying prestorm foreshore slope
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./data/interim/twl_foreshore_slope_sto06.csv: ./data/interim/waves.csv ./data/interim/tides.csv ./data/interim/profiles.csv ./data/interim/sites.csv ./data/interim/profile_features.csv
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activate ./.venv && python ./src/cli.py create-twl-forecast \
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--waves-csv "./data/interim/waves.csv" \
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--tides-csv "./data/interim/tides.csv" \
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--profiles-csv "./data/interim/profiles.csv" \
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--profile-features-csv "./data/interim/profile_features.csv" \
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--runup-function "sto06" \
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--slope "foreshore" \
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--profile-type "prestorm" \
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--output-file "./data/interim/twl_foreshore_slope_sto06.csv"
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./data/interim/twl_mean_slope_sto06.csv: ./data/interim/waves.csv ./data/interim/tides.csv ./data/interim/profiles.csv ./data/interim/sites.csv ./data/interim/profile_features.csv
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activate ./.venv && python ./src/cli.py create-twl-forecast \
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--waves-csv "./data/interim/waves.csv" \
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--tides-csv "./data/interim/tides.csv" \
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--profiles-csv "./data/interim/profiles.csv" \
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--profile-features-csv "./data/interim/profile_features.csv" \
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--runup-function "sto06" \
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--slope "mean" \
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--profile-type "prestorm" \
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--output-file "./data/interim/twl_mean_slope_sto06.csv"
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# ./data/interim/twl_poststorm_mean_slope_sto06.csv: ./data/interim/waves.csv ./data/interim/tides.csv ./data/interim/profiles.csv ./data/interim/sites.csv ./data/interim/profile_features.csv
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# activate ./.venv && python ./src/cli.py create-twl-forecast \
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# --waves-csv "./data/interim/waves.csv" \
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# --tides-csv "./data/interim/tides.csv" \
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# --profiles-csv "./data/interim/profiles.csv" \
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# --profile-features-csv "./data/interim/profile_features.csv" \
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# --runup-function "sto06" \
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# --slope "mean" \
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# --profile-type "poststorm" \
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# --output-file "./data/interim/twl_poststorm_mean_slope_sto06.csv"
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./data/interim/impacts_observed.csv: ./data/interim/profiles.csv ./data/interim/profile_features.csv
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activate ./.venv && python ./src/cli.py create-observed-impacts \
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--profiles-csv "./data/interim/profiles.csv" \
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--profile-features-csv "./data/interim/profile_features.csv" \
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--output-file "./data/interim/impacts_observed.csv"
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./data/interim/impacts_forecasted_mean_slope_sto06.csv: ./data/interim/profile_features.csv ./data/interim/twl_mean_slope_sto06.csv
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activate ./.venv && python ./src/cli.py create-forecasted-impacts \
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--profile-features-csv "./data/interim/profile_features.csv" \
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--forecasted-twl-csv "./data/interim/twl_mean_slope_sto06.csv" \
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--output-file "./data/interim/impacts_forecasted_mean_slope_sto06.csv"
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./data/interim/impacts_forecasted_foreshore_slope_sto06.csv: ./data/interim/profile_features.csv ./data/interim/twl_foreshore_slope_sto06.csv
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activate ./.venv && python ./src/cli.py create-forecasted-impacts \
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--profile-features-csv "./data/interim/profile_features.csv" \
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--forecasted-twl-csv "./data/interim/twl_foreshore_slope_sto06.csv" \
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--output-file "./data/interim/impacts_forecasted_foreshore_slope_sto06.csv"
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# ./data/interim/impacts_forecasted_poststorm_mean_slope_sto06.csv: ./data/interim/profile_features.csv ./data/interim/twl_foreshore_slope_sto06.csv
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# activate ./.venv && python ./src/cli.py create-forecasted-impacts \
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# --profile-features-csv "./data/interim/profile_features.csv" \
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# --forecasted-twl-csv "./data/interim/twl_poststorm_mean_slope_sto06.csv" \
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# --output-file "./data/interim/impacts_forecasted_poststorm_mean_slope_sto06.csv"
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./data/interim/impacts_forecasted_mean_slope_sto06.geojson: ./data/interim/impacts_forecasted_mean_slope_sto06.csv
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activate ./.venv && python ./src/cli.py impacts-to-geojson \
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--sites-csv "./data/interim/sites.csv" \
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--observed-impacts-csv "./data/interim/impacts_observed.csv" \
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--forecast-impacts-csv "./data/interim/impacts_forecasted_mean_slope_sto06.csv" \
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--output-geojson "./data/interim/impacts_forecasted_mean_slope_sto06.geojson"
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./data/interim/impacts_forecasted_mean_slope_sto06_R_high.geojson: ./data/interim/impacts_forecasted_mean_slope_sto06.csv
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activate ./.venv && python ./src/cli.py R-high-to-geojson \
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--sites-csv "./data/interim/sites.csv" \
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--profile-csv "./data/interim/profiles.csv" \
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--impacts-csv "./data/interim/impacts_forecasted_mean_slope_sto06" \
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--output-geojson "./data/interim/impacts_forecasted_mean_slope_sto06_R_high.geojson"
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./data/interim/profile_features.geojson: ./data/interim/profile_features.csv
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activate ./.venv && python ./src/cli.py R-high-to-geojson \
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--sites-csv "./data/interim/sites.csv" \
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--profile-features-csv "./data/interim/profile_features.csv" \
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--output-geojson "./data/interim/profile_features.geojson"
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./data/interim/sites.geojson: ./data/interim/sites.csv
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activate ./.venv && python ./src/cli.py sites-csv-to-geojson \
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--input-csv "./data/interim/sites.csv" \
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--output-geojson "./data/interim/sites.geojson"
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###############################
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# Misc commands
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format: ./src/*.py ##@misc Check python file formatting
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activate ./.venv && black --line-length 120 "src/"
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###############################
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# Help command
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.DEFAULT_GOAL := help
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.PHONY: help
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# Refer to https://gist.github.com/prwhite/8168133
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#COLORS
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GREEN := $(shell tput -Txterm setaf 2)
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WHITE := $(shell tput -Txterm setaf 7)
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YELLOW := $(shell tput -Txterm setaf 3)
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RESET := $(shell tput -Txterm sgr0)
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# Add the following 'help' target to your Makefile
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# And add help text after each target name starting with '\#\#'
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# A category can be added with @category
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HELP_FUN = \
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%help; \
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while(<>) { push @{$$help{$$2 // 'options'}}, [$$1, $$3] if /^([a-zA-Z\-]+)\s*:.*\#\#(?:@([a-zA-Z\-]+))?\s(.*)$$/ }; \
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print "usage: make [target]\n\n"; \
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for (sort keys %help) { \
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print "${WHITE}$$_:${RESET}\n"; \
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for (@{$$help{$$_}}) { \
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$$sep = " " x (32 - length $$_->[0]); \
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print " ${YELLOW}$$_->[0]${RESET}$$sep${GREEN}$$_->[1]${RESET}\n"; \
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}; \
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print "\n"; }
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help: ##@other Show this help.
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@perl -e '$(HELP_FUN)' $(MAKEFILE_LIST)
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