Fix paths

Scripts should be run from the repository base directory.

src/data/mat_to_csv.py

@@ -8,7 +8,7 @@ from datetime import datetime, timedelta
 import pandas as pd
 from mat4py import loadmat
 
-logging.config.fileConfig('../logging.conf', disable_existing_loggers=False)
+logging.config.fileConfig('./src/logging.conf', disable_existing_loggers=False)
 logger = logging.getLogger(__name__)
 
 
@@ -196,9 +196,9 @@ def replace_unique_sites(df, df_sites, cols=['beach', 'lat', 'lon']):
 
 
 def main():
-    df_waves = parse_waves(waves_mat='../../data/raw/waves.mat')
-    df_tides = parse_tides(tides_mat='../../data/raw/tides.mat')
-    df_profiles = parse_profiles(profiles_mat='../../data/raw/profiles.mat')
+    df_waves = parse_waves(waves_mat='./data/raw/processed_shorelines/waves.mat')
+    df_tides = parse_tides(tides_mat='./data/raw/processed_shorelines/tides.mat')
+    df_profiles = parse_profiles(profiles_mat='./data/raw/processed_shorelines/profiles.mat')
     df_sites = get_unique_sites(dfs=[df_waves, df_tides, df_profiles])
     df_orientations = parse_orientations(orientations_mat='./data/raw/processed_shorelines/orientations.mat')
 
@@ -217,10 +217,10 @@ def main():
     df_sites.set_index(['site_id'], inplace=True)
 
     logger.info('Outputting .csv files')
-    df_profiles.to_csv('../../data/interim/profiles.csv')
-    df_tides.to_csv('../../data/interim/tides.csv')
-    df_waves.to_csv('../../data/interim/waves.csv')
-    df_sites.to_csv('../../data/interim/sites.csv')
+    df_profiles.to_csv('./data/interim/profiles.csv')
+    df_tides.to_csv('./data/interim/tides.csv')
+    df_waves.to_csv('./data/interim/waves.csv')
+    df_sites.to_csv('./data/interim/sites.csv')
     logger.info('Done!')