Add new notebook for examining variables
Want to find relationships between explanatory variables.develop
Chris Leaman
6 years ago
parent
7069c3b627
commit
7e09b9a084
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{
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"cells": [
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{
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"cell_type": "markdown",
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"metadata": {},
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"source": [
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"# Investigate "
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]
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},
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{
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"cell_type": "markdown",
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"metadata": {},
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"source": [
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"## Setup notebook\n",
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"Import our required packages and set default plotting options."
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {},
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"outputs": [],
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"source": [
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"# Enable autoreloading of our modules. \n",
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"# Most of the code will be located in the /src/ folder, \n",
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"# and then called from the notebook.\n",
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"%matplotlib inline\n",
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"%reload_ext autoreload\n",
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"%autoreload"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {},
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"outputs": [],
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"source": [
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"from IPython.core.debugger import set_trace\n",
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"\n",
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"import pandas as pd\n",
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"import numpy as np\n",
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"import os\n",
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"import decimal\n",
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"import plotly\n",
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"import plotly.graph_objs as go\n",
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"import plotly.plotly as py\n",
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"import plotly.tools as tls\n",
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"import plotly.figure_factory as ff\n",
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"from plotly import tools\n",
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"import plotly.io as pio\n",
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"from scipy import stats\n",
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"import math\n",
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"import matplotlib\n",
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"from matplotlib import cm\n",
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"import colorlover as cl\n",
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"from tqdm import tqdm_notebook\n",
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"from ipywidgets import widgets, Output\n",
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"from IPython.display import display, clear_output, Image, HTML\n",
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"from scipy import stats\n",
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"from sklearn.metrics import confusion_matrix\n",
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"import matplotlib.pyplot as plt\n",
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"from matplotlib.ticker import MultipleLocator\n",
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"from matplotlib.lines import Line2D\n",
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"from cycler import cycler\n",
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"from scipy.interpolate import interp1d\n",
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"from pandas.api.types import CategoricalDtype"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {},
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"outputs": [],
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"source": [
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"# Matplot lib default settings\n",
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"plt.rcParams[\"figure.figsize\"] = (10,6)\n",
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"plt.rcParams['axes.grid']=True\n",
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"plt.rcParams['grid.alpha'] = 0.5\n",
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"plt.rcParams['grid.color'] = \"grey\"\n",
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"plt.rcParams['grid.linestyle'] = \"--\"\n",
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"plt.rcParams['axes.grid']=True\n",
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"\n",
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"# https://stackoverflow.com/a/20709149\n",
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"# matplotlib.rcParams['text.usetex'] = True\n",
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"\n",
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"matplotlib.rcParams['text.latex.preamble'] = [\n",
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" r'\\usepackage{siunitx}', # i need upright \\micro symbols, but you need...\n",
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" r'\\sisetup{detect-all}', # ...this to force siunitx to actually use your fonts\n",
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" r'\\usepackage{helvet}', # set the normal font here\n",
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" r'\\usepackage{amsmath}',\n",
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" r'\\usepackage{sansmath}', # load up the sansmath so that math -> helvet\n",
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" r'\\sansmath', # <- tricky! -- gotta actually tell tex to use!\n",
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"] "
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]
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},
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{
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"cell_type": "markdown",
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"metadata": {},
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"source": [
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"## Import data\n",
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"Import our data from the `./data/interim/` folder and load it into pandas dataframes. "
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {},
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"outputs": [],
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"source": [
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"def df_from_csv(csv, index_col, data_folder='../data/interim'):\n",
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" print('Importing {}'.format(csv))\n",
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" return pd.read_csv(os.path.join(data_folder,csv), index_col=index_col)\n",
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"\n",
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"df_waves = df_from_csv('waves.csv', index_col=[0, 1])\n",
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"df_tides = df_from_csv('tides.csv', index_col=[0, 1])\n",
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"df_profiles = df_from_csv('profiles.csv', index_col=[0, 1, 2])\n",
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"df_sites = df_from_csv('sites.csv', index_col=[0])\n",
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"df_sites_waves = df_from_csv('sites_waves.csv', index_col=[0])\n",
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"df_profile_features_crest_toes = df_from_csv('profile_features_crest_toes.csv', index_col=[0,1])\n",
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"\n",
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"# Note that the forecasted data sets should be in the same order for impacts and twls\n",
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"impacts = {\n",
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" 'forecasted': {\n",
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" 'postintertidal_slope_sto06': df_from_csv('impacts_forecasted_postintertidal_slope_sto06.csv', index_col=[0]),\n",
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" 'postmean_slope_sto06': df_from_csv('impacts_forecasted_postmean_slope_sto06.csv', index_col=[0]),\n",
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" 'preintertidal_slope_sto06': df_from_csv('impacts_forecasted_preintertidal_slope_sto06.csv', index_col=[0]),\n",
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" 'premean_slope_sto06': df_from_csv('impacts_forecasted_premean_slope_sto06.csv', index_col=[0]),\n",
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" },\n",
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" 'observed': df_from_csv('impacts_observed.csv', index_col=[0])\n",
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" }\n",
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"\n",
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"twls = {\n",
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" 'forecasted': {\n",
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" 'postintertidal_slope_sto06': df_from_csv('twl_postintertidal_slope_sto06.csv', index_col=[0,1]),\n",
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" 'postmean_slope_sto06': df_from_csv('twl_postmean_slope_sto06.csv', index_col=[0,1]),\n",
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" 'preintertidal_slope_sto06': df_from_csv('twl_preintertidal_slope_sto06.csv', index_col=[0,1]),\n",
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" 'premean_slope_sto06': df_from_csv('twl_premean_slope_sto06.csv', index_col=[0,1]),\n",
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" }\n",
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"}\n",
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"print('Done!')"
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]
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},
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{
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"cell_type": "markdown",
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"metadata": {},
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"source": [
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"# Sec1"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {},
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"outputs": [],
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"source": [
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"# Create df with all our data\n",
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"df = impacts['observed'].merge(df_sites_waves,left_index=True,right_index=True)\n",
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"df.columns"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {},
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"outputs": [],
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"source": [
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"import seaborn as sns\n",
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"sns.set(style=\"white\")\n",
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"g = sns.pairplot(\n",
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" data=df,\n",
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" hue='storm_regime',\n",
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" dropna=True,\n",
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" palette={\n",
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" 'swash': 'blue',\n",
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" 'collision': 'orange',\n",
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" 'overwash': 'red'\n",
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" },\n",
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" vars=['beta_prestorm_mean',\n",
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" 'beta_poststorm_mean',\n",
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" 'beta_diff_mean',\n",
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" 'swash_pct_change',\n",
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" 'df_width_msl_change_m',\n",
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" 'df_width_msl_change_pct',\n",
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" 'Exscum'])"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {},
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"outputs": [],
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"source": [
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"g.savefig('11_pairplot.png')"
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]
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}
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],
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"metadata": {
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"hide_input": false,
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"kernelspec": {
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"display_name": "Python 3",
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"language": "python",
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"name": "python3"
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},
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"language_info": {
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"codemirror_mode": {
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"name": "ipython",
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"version": 3
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},
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"file_extension": ".py",
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"mimetype": "text/x-python",
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"name": "python",
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"nbconvert_exporter": "python",
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"pygments_lexer": "ipython3",
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"version": "3.6.6"
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},
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"toc": {
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"base_numbering": 1,
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"nav_menu": {},
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"number_sections": true,
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"sideBar": true,
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"skip_h1_title": false,
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"title_cell": "Table of Contents",
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"title_sidebar": "Contents",
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"toc_cell": false,
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"toc_position": {},
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"toc_section_display": true,
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"toc_window_display": false
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},
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"varInspector": {
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"cols": {
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"lenName": 16,
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"lenType": 16,
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"lenVar": 40
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},
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"kernels_config": {
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"python": {
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"delete_cmd_postfix": "",
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"delete_cmd_prefix": "del ",
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"library": "var_list.py",
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"varRefreshCmd": "print(var_dic_list())"
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},
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"r": {
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"delete_cmd_postfix": ") ",
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"delete_cmd_prefix": "rm(",
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"library": "var_list.r",
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"varRefreshCmd": "cat(var_dic_list()) "
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}
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},
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"types_to_exclude": [
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"module",
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"function",
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"builtin_function_or_method",
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"instance",
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"_Feature"
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],
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"window_display": false
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}
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},
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"nbformat": 4,
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"nbformat_minor": 2
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}
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